Difference between revisions of "Template:FFCP"
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<tr><th scope="row" align="right">DPIdataset:</th><td> {{#switch:{{{DPIdataset}}} |robustDPI=robustDPI|permissiveDPI=permissiveDPI|#default = NA}}</td></tr> | <tr><th scope="row" align="right">DPIdataset:</th><td> {{#switch:{{{DPIdataset}}} |robustDPI=robustDPI|permissiveDPI=permissiveDPI|#default = NA}}</td></tr> | ||
<tr><th scope="row" align="right">TSS-like-by-RIKEN-classifier(Yes/No):</th><td> {{#switch: {{{TSSclassifier}}} | S = Yes| #default = NA| W= No|N=No}} </td></tr> | <tr><th scope="row" align="right">TSS-like-by-RIKEN-classifier(Yes/No):</th><td> {{#switch: {{{TSSclassifier}}} | S = Yes| #default = NA| W= No|N=No}} </td></tr> | ||
| − | <tr><th scope="row" align="right"> | + | <tr><th scope="row" align="right">GencodeV16b-All-Build2-RSEM10-CPAT_consensus:</th><td> |
{{#switch: {{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}} | no_gencodeV16_or_build2_transcript = no_gencodeV16_or_build2_transcript| #default = NA|novel_noncoding=novel_noncoding|novel_coding=novel_coding|gencodeV16_ncRNA=gencodeV16_ncRNA|gencodeV16_protein_coding=gencodeV16_protein_coding}}</td></tr> | {{#switch: {{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}} | no_gencodeV16_or_build2_transcript = no_gencodeV16_or_build2_transcript| #default = NA|novel_noncoding=novel_noncoding|novel_coding=novel_coding|gencodeV16_ncRNA=gencodeV16_ncRNA|gencodeV16_protein_coding=gencodeV16_protein_coding}}</td></tr> | ||
| + | <tr><th scope="row" align="right">DHS-support(Yes/No):</th><td> {{#switch: {{{DHSsupport}}}|supported= Yes|not_supported=No|#default=NA}} </td></tr> | ||
<tr><th scope="row" align="right">EntrezGene:</th><td>{{#if:{{{EntrezGene}}}|{{#ifeq:{{#show:{{FULLPAGENAME}}|?EntrezGene}}|NA|NA|{{#ifexist:EntrezGene:{{{EntrezGene}}}|[[EntrezGene:{{{EntrezGene}}}|{{#show:EntrezGene:{{{EntrezGene}}}|?Symbol}}]]|[http://www.ncbi.nlm.nih.gov/gene?term={{{EntrezGene}}} {{{EntrezGene}}}] }}}}|NA}}</td></tr> | <tr><th scope="row" align="right">EntrezGene:</th><td>{{#if:{{{EntrezGene}}}|{{#ifeq:{{#show:{{FULLPAGENAME}}|?EntrezGene}}|NA|NA|{{#ifexist:EntrezGene:{{{EntrezGene}}}|[[EntrezGene:{{{EntrezGene}}}|{{#show:EntrezGene:{{{EntrezGene}}}|?Symbol}}]]|[http://www.ncbi.nlm.nih.gov/gene?term={{{EntrezGene}}} {{{EntrezGene}}}] }}}}|NA}}</td></tr> | ||
<tr><th scope="row" align="right">Description:</th><td> {{#show:{{FULLPAGENAME}}|?description}}</td></tr> | <tr><th scope="row" align="right">Description:</th><td> {{#show:{{FULLPAGENAME}}|?description}}</td></tr> | ||
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}} | }} | ||
<div style="clear:both;"></div> | <div style="clear:both;"></div> | ||
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|<html> | |<html> | ||
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{{#arraymap:{{{short_description}}}|,|$|{{#set:short_description=$}}}} | {{#arraymap:{{{short_description}}}|,|$|{{#set:short_description=$}}}} | ||
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{{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}} | {{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}} | ||
{{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}} | {{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}} | ||
| + | {{#set:dpi_dataset={{{DPIdataset}}}}} | ||
| + | {{#set:TSS_like_by_RIKEN_classifier={{{TSSclassifier}}}}} | ||
| + | {{#set:GencodeV16b_All_Build2_RSEM10_CPAT_consensus={{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}}}} | ||
| + | {{#set:DHS_support={{{DHSsupport}}}}} | ||
| + | |||
[[Category:FFCP]] | [[Category:FFCP]] | ||
Revision as of 02:15, 10 January 2014
| Short description: | |
|---|---|
| DPIdataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| GencodeV16b-All-Build2-RSEM10-CPAT_consensus: | NA |
| DHS-support(Yes/No): | NA |
| EntrezGene: | {{{EntrezGene}}} |
| Description: | |
| Species: | |
| Association with transcript: | |
| HGNC: | NA |
| UniProt: | |
| Coexpression cluster: |
View on UCSC genome browser OSC local mirror
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | {{{short_description}}} |
|---|---|
| 0.00 |
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_celltype_v019_2}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_uberon_v019_2}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_disease_v019_2}}}|]] |
"FFCP" is not a number.
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "GencodeV16b All Build2 RSEM10 CPAT consensus" (as page type) with input value "{{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
