Difference between revisions of "Template:FFCP"
From FANTOM5_SSTAR
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<div style="width:50%; float:none;"> | <div style="width:50%; float:none;"> | ||
<table class="detailinfo"> | <table class="detailinfo"> | ||
| − | <tr><th scope="row" align="right">Short description:</th><td> {{#show:{{FULLPAGENAME}}|?short_description}}</td></tr> | + | <tr><th scope="row" align="right">Short description:</th><td> {{#show:{{FULLPAGENAME}}|?short_description}}</td></tr><tr><th scope="row" align="right">Species:</th><td>{{#if:{{#pos:{{FULLPAGENAME}}|Hg19}}|[[species::Human (Homo sapiens)]]}}{{#if:{{#pos:{{FULLPAGENAME}}|Mm9}}|[[species::Mouse (Mus musculus)]]}}</td></tr> |
| − | <tr><th scope="row" align="right"> | + | <tr><th scope="row" align="right">DPI dataset:</th><td> {{#switch:{{{DPIdataset}}} |robustDPI=robustDPI|permissiveDPI=permissiveDPI|#default = NA}}</td></tr> |
<tr><th scope="row" align="right">TSS-like-by-RIKEN-classifier(Yes/No):</th><td> {{#switch: {{{TSSclassifier}}} | S = Yes| #default = NA| W= No|N=No}} </td></tr> | <tr><th scope="row" align="right">TSS-like-by-RIKEN-classifier(Yes/No):</th><td> {{#switch: {{{TSSclassifier}}} | S = Yes| #default = NA| W= No|N=No}} </td></tr> | ||
<tr><th scope="row" align="right">GencodeV16b-All-Build2-RSEM10-CPAT_consensus:</th><td> | <tr><th scope="row" align="right">GencodeV16b-All-Build2-RSEM10-CPAT_consensus:</th><td> | ||
{{#switch: {{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}} | no_gencodeV16_or_build2_transcript = no_gencodeV16_or_build2_transcript| #default = NA|novel_noncoding=novel_noncoding|novel_coding=novel_coding|gencodeV16_ncRNA=gencodeV16_ncRNA|gencodeV16_protein_coding=gencodeV16_protein_coding}}</td></tr> | {{#switch: {{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}} | no_gencodeV16_or_build2_transcript = no_gencodeV16_or_build2_transcript| #default = NA|novel_noncoding=novel_noncoding|novel_coding=novel_coding|gencodeV16_ncRNA=gencodeV16_ncRNA|gencodeV16_protein_coding=gencodeV16_protein_coding}}</td></tr> | ||
| − | <tr><th scope="row" align="right">DHS | + | <tr><th scope="row" align="right">DHS support(Yes/No):</th><td> {{#switch: {{{DHSsupport}}}|supported= Yes|not_supported=No|#default=NA}} </td></tr><tr><th scope="row" align="right">Description:</th><td> {{#show:{{FULLPAGENAME}}|?description}}</td></tr><tr><th scope="row" align="right">Coexpression cluster:</th><td>{{#if:{{#pos:{{PAGENAME}}|Hg19}} |
| − | |||
| − | <tr><th scope="row" align="right">Description:</th><td> {{#show:{{FULLPAGENAME}}|?description}}</td></tr> | ||
| − | |||
| − | |||
| − | |||
|{{#ifeq:{{#pos:{{{coexpression_cluster_id}}}|C}}|0|[[coexpression_cluster_id::{{{coexpression_cluster_id}}}|]][[Coexpression cluster:{{{coexpression_cluster_id}}}|{{#show:Coexpression cluster:{{{coexpression_cluster_id}}}|?Full_id}}]]|NA}} | |{{#ifeq:{{#pos:{{{coexpression_cluster_id}}}|C}}|0|[[coexpression_cluster_id::{{{coexpression_cluster_id}}}|]][[Coexpression cluster:{{{coexpression_cluster_id}}}|{{#show:Coexpression cluster:{{{coexpression_cluster_id}}}|?Full_id}}]]|NA}} | ||
}}{{#if:{{#pos:{{PAGENAME}}|Mm9}} | }}{{#if:{{#pos:{{PAGENAME}}|Mm9}} | ||
|{{#if:{{#pos:{{{MCL_coexpression_id}}}|MCL}}|NA|[[MCL_coexpression_id::{{{MCL_coexpression_id}}}|]][[MCL_coexpression_mm9:{{{MCL_coexpression_id}}}]]}} | |{{#if:{{#pos:{{{MCL_coexpression_id}}}|MCL}}|NA|[[MCL_coexpression_id::{{{MCL_coexpression_id}}}|]][[MCL_coexpression_mm9:{{{MCL_coexpression_id}}}]]}} | ||
| − | }}</td></tr> | + | }}</td></tr><tr><th scope="row" align="right">Association with transcript:</th><td> {{#show:{{FULLPAGENAME}}|?association_with_transcript}}</td></tr> |
| − | + | <tr><th scope="row" align="right">EntrezGene:</th><td>{{#if:{{{EntrezGene}}}|{{#ifeq:{{#show:{{FULLPAGENAME}}|?EntrezGene}}|NA|NA|{{#ifexist:EntrezGene:{{{EntrezGene}}}|[[EntrezGene:{{{EntrezGene}}}|{{#show:EntrezGene:{{{EntrezGene}}}|?Symbol}}]]|[http://www.ncbi.nlm.nih.gov/gene?term={{{EntrezGene}}} {{{EntrezGene}}}] }}}}|NA}}</td></tr> | |
| + | {{#if: {{{HGNC}}} | <tr><th scope="row" align="right">HGNC:</th><td> {{#ifeq:{{#show:{{FULLPAGENAME}}|?HGNC}}| {{#if:{{#pos:{{FULLPAGENAME}}|Hg19}}|NA|}}|NA|[http://www.genenames.org/cgi-bin/quick_search.pl?.cgifields=type&num=50&search={{#show:{{FULLPAGENAME}}|?HGNC}}&submit=Submit {{#show:{{FULLPAGENAME}}|?HGNC}}]|NA}}</td></tr>|}}{{#if: {{{UniProt}}} | <tr><th scope="row" align="right">UniProt:</th><td> {{#ifeq:{{#show:{{FULLPAGENAME}}|?UniProt}}|NA|NA|{{#arraymap:{{#show:{{FULLPAGENAME}}|?UniProt}}|,|$|[http://www.uniprot.org/uniprot/?query=$ $] |}}}}</td></tr> |}} | ||
{{#switch:{{#explode:{{PAGENAME}}|:|0}} | {{#switch:{{#explode:{{PAGENAME}}|:|0}} | ||
|Hg19= | |Hg19= | ||
Revision as of 02:38, 10 January 2014
| Short description: | |
|---|---|
| Species: | |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| GencodeV16b-All-Build2-RSEM10-CPAT_consensus: | NA |
| DHS support(Yes/No): | NA |
| Description: | |
| Coexpression cluster: | |
| Association with transcript: | |
| EntrezGene: | {{{EntrezGene}}} |
| HGNC: | NA |
| UniProt: |
View on UCSC genome browser OSC local mirror
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | {{{short_description}}} |
|---|---|
| 0.00 |
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_celltype_v019_2}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_uberon_v019_2}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_disease_v019_2}}}|]] |
"FFCP" is not a number.
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "GencodeV16b All Build2 RSEM10 CPAT consensus" (as page type) with input value "{{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
