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*id: [[id::{{{id}}}]]
{{Loading|loadingimage=sprites.gif}}<table>
*short_description: {{#show:{{PAGENAME}}|?short_description}}
<tr><th scope="row" align="right">Short description:</th><td>{{#show:{{FULLPAGENAME}}|?short_description}}</td></tr><tr><th scope="row" align="right">Species:</th><td>{{#if:{{#pos:{{FULLPAGENAME}}|Hg19}}|[[species::Human (Homo sapiens)]]}}{{#if:{{#pos:{{FULLPAGENAME}}|Mm9}}|[[species::Mouse (Mus musculus)]]}}</td></tr><tr><th scope="row" align="right">DPI dataset:</th><td> {{#switch:{{{DPIdataset}}} |robust=Robust|permissive=Permissive|#default = NA}}</td></tr>
*description: {{#show:{{PAGENAME}}|?description}}
<tr><th scope="row" align="right">TSS-like-by-RIKEN-classifier(Yes/No):</th><td> {{#switch: {{{TSSclassifier}}} | strong = Yes| #default = NA| weak= No|not=No}} </td></tr>
*association_with_transcript: {{#show:{{PAGENAME}}|?association_with_transcript}}
<!--tr><th scope="row" align="right">[[Property:GencodeV16b_All_Build2_RSEM10_CPAT_consensus|GencodeV16b-All-Build2-RSEM10-CPAT_consensus:]]</th><td>
*EntrezGene: {{#show:{{PAGENAME}}|?EntrezGene}}
{{#switch: {{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}} | no_gencodeV16_or_build2_transcript = no_gencodeV16_or_build2_transcript| #default = NA|novel_noncoding=novel_noncoding|novel_coding=novel_coding|gencodeV16_ncRNA=gencodeV16_ncRNA|gencodeV16_protein_coding=gencodeV16_protein_coding}}</td></tr-->
{{#if: {{{HGNC}}} | *HGNC: {{#show:{{PAGENAME}}|?HGNC}} |}}
<tr><th scope="row" align="right">DHS support(Yes/No):</th><td> {{#switch: {{{DHSsupport}}}|supported= Yes|not supported=No|#default=NA}} </td></tr>
*UniProt: {{#show:{{PAGENAME}}|?UniProt}}
<tr><th scope="row" align="right">Description:</th><td> {{#show:{{FULLPAGENAME}}|?description}}</td></tr><tr><th scope="row" align="right">Coexpression cluster:</th><td>{{#if:{{#pos:{{PAGENAME}}|Hg19}}
|{{#ifeq:{{#pos:{{{coexpression_cluster_id}}}|C}}|0|[[coexpression_cluster_id::{{{coexpression_cluster_id}}}|]][[Coexpression cluster:{{{coexpression_cluster_id}}}|{{#show:Coexpression cluster:{{{coexpression_cluster_id}}}|?Full_id}}]]|NA}}
}}{{#if:{{#pos:{{PAGENAME}}|Mm9}}
|{{#if:{{#pos:{{{MCL_coexpression_id}}}|MCL}}|NA|[[MCL_coexpression_id::{{{MCL_coexpression_id}}}|]][[MCL_coexpression_mm9:{{{MCL_coexpression_id}}}]]}}
}}</td></tr><tr><th scope="row" align="right">Association with transcript:</th><td> {{#show:{{FULLPAGENAME}}|?association_with_transcript}}</td></tr>
<tr><th scope="row" align="right">EntrezGene:</th><td>{{#if:{{{EntrezGene}}}|{{#ifeq:{{#show:{{FULLPAGENAME}}|?EntrezGene}}|NA|NA|{{#ifexist:EntrezGene:{{{EntrezGene}}}|[[EntrezGene:{{{EntrezGene}}}|{{#show:EntrezGene:{{{EntrezGene}}}|?Symbol}}]]|[http://www.ncbi.nlm.nih.gov/gene?term={{#replace:{{{EntrezGene}}}|entrezgene:|}}  {{#replace:{{{EntrezGene}}}|entrezgene:|}}] }}}}|NA}}</td></tr>{{#if: {{{HGNC}}} | <tr><th scope="row" align="right">HGNC:</th><td> {{#ifeq:{{#show:{{FULLPAGENAME}}|?HGNC}}| {{#if:{{#pos:{{FULLPAGENAME}}|Hg19}}|NA|}}|NA|[http://www.genenames.org/cgi-bin/quick_search.pl?.cgifields=type&num=50&search={{#replace:{{#show:{{FULLPAGENAME}}|?HGNC}}|HGNC:| }}&submit=Submit {{#replace:{{#show:{{FULLPAGENAME}}|?HGNC}}|HGNC:|}}]|NA}}</td></tr> |}}{{#if: {{{HGNC}}} |<tr><th scope="row" align="right">UniProt:</th><td> {{#ifeq:{{#show:{{FULLPAGENAME}}|?UniProt}}||NA|{{#arraymap:{{#show:{{FULLPAGENAME}}|?UniProt}}|,|$|[http://www.uniprot.org/uniprot/?query=$  $] |}}}}</td></tr>|}}
{{#switch:{{#explode:{{PAGENAME}}|:|0}}
|Hg19=<tr><th scope="row" align="right">Genome view:</th><td>[//fantom.gsc.riken.jp/zenbu/gLyphs/#config=ONHzqgf2E5Xtmnpsh2gURB;loc={{#explode:{{PAGENAME}}|,|0}} ZENBU]</td></tr>
|Mm9=<tr><th scope="row" align="right">Link to Zenbu:</th><td>[//fantom.gsc.riken.jp/zenbu/gLyphs/#config=Uz8Jh3NEDl8qV47r6EGQ8B;loc={{#explode:{{PAGENAME}}|,|0}} ZENBU]</td></tr>
}}
</table>


{{#if:{{#pos:{{PAGENAME}}|hg19}}|
<html>
<html>
<script type="text/javascript" src="http://f5-webapp2.gsc.riken.jp/rb_js/highcharts/highcharts.js"></script>
<script language="javascript" type="text/javascript">
<div id="container" style="width:100%; height:400px;">
$(document).ready(function() {
// hide-show animation for ucsc genome browser view
$("#ucsc_snap_view").hover(function(){
    $(this).stop(true, false).animate({ height: "600px"});
}, function() {
    $(this).stop(true, false).animate({ height: "30px" });
});
});
</script>
</html><br>
{{Fontsize|3|View on UCSC genome browser}}
----
<div id="ucsc_snap_view" style="width:750px; height:30px; border-style:solid; border-width:1px; border-color:#aaaaaa;  overflow:auto;">
Mouse over to see Genome browser image, Click image to go to Genome browser
 
{{#ucsc_gb_link:{{#if:{{#pos:{{FULLPAGENAME}}|Hg19}}|Hg19}}{{#if:{{#pos:{{FULLPAGENAME}}|Mm9}}|Mm9}}::{{{cluster_id}}}}}
</div><br>
{{Fontsize|3|CAGE Expression}}
----
<html><script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
<style type="text/css" title="currentStyle">
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
 
</html>
 
<html>
<style type="text/css"> 
.rotate90 {
  -webkit-transform: rotate(-90deg);
  -moz-transform: rotate(-90deg);
-webkit-transform-origin: 6px 18px;
-moz-transform-origin: 6px 18px;
width:1px;
}
.highlight { background-color: yellow }
</style>
<script type="text/javascript">
<script type="text/javascript">
<!--
$(document).ready(function() {
var chart = new Highcharts.Chart({
    var oTable = $('#gene_exptable').DataTable({
    chart: {
         dom: 'frt',
         renderTo: 'container'
scrollY: "300px",
    },
paging: false,
    legend: {
scrollCollapse: true,
        enabled: false
pageLength: -1,
    },
order: [[1,'desc']],
    title: {
columnDefs: [{ orderSequence: [ "desc", "asc" ], targets: [ 1 ] }, { type: "html-num", targets: [ 0 ] } ]
        text: null
});
    },
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
    yAxis: {
 
        title: {
 
            text: "Z-value"
var data = [];
        }
var slist = [];
    },
var plotdata = [];
    xAxis: {
 
        labels: {
 
            enabled: false
// chart checkbox
        },
for (var i2=1; i2<$('#gene_exptable thead th').length; i2++){
        categories: ['tpm.Adipocyte_-_breast,_donor1.CNhs11051.11376-118A8','tpm.Adipocyte_-_breast,_donor2.CNhs11969.11327-117E4','tpm.Adipocyte_-_omental,_donor1.CNhs11054.11473-119C6','tpm.Adipocyte_-_omental,_donor2.CNhs12067.11474-119C7','tpm.Adipocyte_-_omental,_donor3.CNhs12068.11475-119C8','tpm.Adipocyte_-_perirenal,_donor1.CNhs12069.11476-119C9','tpm.Adipocyte_-_subcutaneous,_donor1.CNhs12494.11259-116F8','tpm.Adipocyte_-_subcutaneous,_donor2.CNhs11371.11336-117F4','tpm.Adipocyte_-_subcutaneous,_donor3.CNhs12017.11408-118E4','tpm.Alveolar_Epithelial_Cells,_donor1.CNhs11325.11510-119G7','tpm.Alveolar_Epithelial_Cells,_donor2.CNhs12084.11590-120G6','tpm.Amniotic_Epithelial_Cells,_donor1.CNhs11341.11533-120A3','tpm.Amniotic_Epithelial_Cells,_donor3.CNhs12125.11694-123A2','tpm.Anulus_Pulposus_Cell,_donor1.CNhs10876.11248-116E6','tpm.Anulus_Pulposus_Cell,_donor2.CNhs12064.11463-119B5','tpm.Aortic_smooth_muscle_cell_response_to_FGF2,_00hr00min,_biol_rep1_(LK1).CNhs13339.12642-134G5','tpm.Aortic_smooth_muscle_cell_response_to_FGF2,_00hr00min,_biol_rep2_(LK2).CNhs13358.12740-135I4','tpm.Aortic_smooth_muscle_cell_response_to_IL1b,_00hr00min,_biol_rep1_(LK31).CNhs13349.12652-134H6','tpm.Aortic_smooth_muscle_cell_response_to_IL1b,_00hr00min,_biol_rep2_(LK32).CNhs13369.12750-136A5','tpm.Astrocyte_-_cerebellum,_donor1.CNhs11321.11500-119F6','tpm.Astrocyte_-_cerebellum,_donor2.CNhs12081.11580-120F5','tpm.Astrocyte_-_cerebellum,_donor3.CNhs12117.11661-122F5','tpm.Astrocyte_-_cerebral_cortex,_donor1.CNhs10864.11235-116D2','tpm.Astrocyte_-_cerebral_cortex,_donor2.CNhs11960.11316-117D2','tpm.Astrocyte_-_cerebral_cortex,_donor3.CNhs12005.11392-118C6','tpm.B_lymphoblastoid_cell_line:_GM12878_ENCODE,_biol_rep1.CNhs12331.10821-111C2','tpm.B_lymphoblastoid_cell_line:_GM12878_ENCODE,_biol_rep2.CNhs12332.10822-111C3','tpm.B_lymphoblastoid_cell_line:_GM12878_ENCODE,_biol_rep3.CNhs12333.10823-111C4','tpm.Basophils,_donor1.CNhs12546.12241-129G9','tpm.Basophils,_donor2.CNhs12563.12242-129H1','tpm.Basophils,_donor3.CNhs12575.12243-129H2','tpm.Bronchial_Epithelial_Cell,_donor4.CNhs12054.11453-119A4','tpm.Bronchial_Epithelial_Cell,_donor5.CNhs12058.11457-119A8','tpm.Bronchial_Epithelial_Cell,_donor6.CNhs12062.11461-119B3','tpm.Burkitt's_lymphoma_cell_line:DAUDI.CNhs10739.10422-106C8','tpm.Burkitt's_lymphoma_cell_line:RAJI.CNhs11268.10476-106I8','tpm.CD133+_stem_cells_-_adult_bone_marrow_derived,_pool1.CNhs12552.12224-129F1','tpm.CD14+_Monocytes,_donor1.CNhs10852.11224-116B9','tpm.CD14+_Monocytes,_donor2.CNhs11954.11305-117B9','tpm.CD14+_Monocytes,_donor3.CNhs11997.11381-118B4','tpm.CD14+_monocyte_derived_endothelial_progenitor_cells,_donor1.CNhs10858.11229-116C5','tpm.CD14+_monocyte_derived_endothelial_progenitor_cells,_donor2.CNhs11897.11310-117C5','tpm.CD14+_monocyte_derived_endothelial_progenitor_cells,_donor3.CNhs11904.11386-118B9','tpm.CD14+_monocytes_-_mock_treated,_donor1.CNhs13468.11863-125A9','tpm.CD14+_monocytes_-_mock_treated,_donor2.CNhs13484.11873-125C1','tpm.CD14+_monocytes_-_mock_treated,_donor3.CNhs13491.11883-125D2','tpm.CD14+_monocytes_-_treated_with_B-glucan,_donor1.CNhs13474.11869-125B6','tpm.CD14+_monocytes_-_treated_with_B-glucan,_donor2.CNhs13489.11879-125C7','tpm.CD14+_monocytes_-_treated_with_B-glucan,_donor3.CNhs13495.11889-125D8','tpm.CD14+_monocytes_-_treated_with_BCG,_donor1.CNhs13465.11860-125A6','tpm.CD14+_monocytes_-_treated_with_BCG,_donor2.CNhs13475.11870-125B7','tpm.CD14+_monocytes_-_treated_with_BCG,_donor3.CNhs13543.11880-125C8','tpm.CD14+_monocytes_-_treated_with_Candida,_donor1.CNhs13473.11868-125B5','tpm.CD14+_monocytes_-_treated_with_Candida,_donor2.CNhs13488.11878-125C6','tpm.CD14+_monocytes_-_treated_with_Candida,_donor3.CNhs13494.11888-125D7','tpm.CD14+_monocytes_-_treated_with_Cryptococcus,_donor1.CNhs13472.11867-125B4','tpm.CD14+_monocytes_-_treated_with_Cryptococcus,_donor2.CNhs13487.11877-125C5','tpm.CD14+_monocytes_-_treated_with_Cryptococcus,_donor3.CNhs13546.11887-125D6','tpm.CD14+_monocytes_-_treated_with_Group_A_streptococci,_donor1.CNhs13469.11864-125B1','tpm.CD14+_monocytes_-_treated_with_Group_A_streptococci,_donor2.CNhs13532.11874-125C2','tpm.CD14+_monocytes_-_treated_with_Group_A_streptococci,_donor3.CNhs13492.11884-125D3','tpm.CD14+_monocytes_-_treated_with_IFN_+_N-hexane,_donor1.CNhs13466.11861-125A7','tpm.CD14+_monocytes_-_treated_with_IFN_+_N-hexane,_donor2.CNhs13476.11871-125B8','tpm.CD14+_monocytes_-_treated_with_IFN_+_N-hexane,_donor3.CNhs13490.11881-125C9','tpm.CD14+_monocytes_-_treated_with_Salmonella,_donor1.CNhs13471.11866-125B3','tpm.CD14+_monocytes_-_treated_with_Salmonella,_donor2.CNhs13485.11876-125C4','tpm.CD14+_monocytes_-_treated_with_Salmonella,_donor3.CNhs13493.11886-125D5']
key2 = i2-1;
     },
        $("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 +
    tooltip: {
                              '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">'
        shared: true,
                                + $('#gene_exptable thead th:nth-child('+(i2+1)+')').text() + '</label><br/>');
        useHTML: true,
}
        headerFormat: '<small>{point.key}</small><table>',
 
        pointFormat: '<tr><td style="color: {series.color}">Value: </td>' +
function collectdata(){
        '<td style="text-align: right"><b>{point.y}</b></td></tr>',
data = [];
        footerFormat: '</table>',
for (i2=1, len2=$('#gene_exptable thead th').length; i2<len2; i2++){
        valueDecimals: 2
var plots = [];
    },
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
     series: [{
    plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]);
         name: 'Values',
}
         data: [</html>{{{phase1_expression}}}<html>]
data.push({"label": $('#gene_exptable thead th:nth-child('+(i2+1)+')').text(), "data": plots});
    }]
}
slist = [];
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
    slist.push($("#gene_exptable tr")[i1].cells[0].innerHTML);
}
//test
//slist[0] = "test";
}
 
 
function drawchart(){
 
plotdata = [];
 
$("#gene_exptable_chart_chkbox").find("input:checked").each(function () {
var key = $(this).attr("name");
plotdata.push(data[$(this).attr("name")]);
});
 
var plot1 = $.plot($("#gene_exptable_chart"), plotdata, {
                yaxis:{ axisLabel:'TPM' },
lines:{ show:false },
points:{ show:true },
                grid:{ hoverable:true, clickable:true },
xaxis:{ tickDecimals:0, show:false },
                legend:{ show:false }
});
 
//test
var data_series = plot1.getData();
 
$("#gene_exptable_chart_chkbox label").css("background-color", "white");
$.each(data_series , function(){
$("#gene_exptable_chart_chkbox label:contains(" + this.label + ")").css("background-color", this.color);
});
 
 
 
}
 
collectdata();
drawchart();
 
// re-draw chart event
$(window).resize(function() { drawchart(); });
$("th").click(function() {collectdata(); drawchart(); } );
$("#gene_exptable_paginate").click(function() {collectdata(); drawchart(); } );
$('#gene_exptable').bind('filter', function() {
setTimeout(function(){
collectdata(); drawchart();}, 1000);
} );
$('#gene_exptable_length').change(function() {collectdata(); drawchart(); } );
$("#gene_exptable_chart_chkbox").find("input").click(function() { drawchart(); });
 
// tooltip function start
    function showTooltip(x, y, contents) {
        $('<div id="tooltip">' + contents + '</div>').css( {
            position: 'absolute',
            display: 'none',
            top: y + 5,
            left: x + 5,
            border: '1px solid #aaa',
            padding: '2px',
            'background-color': '#fff',
            opacity: 0.80
        }).appendTo("body").fadeIn(200);
    }
 
    var previousPoint = null;
    $("#gene_exptable_chart").bind("plothover", function (event, pos, item) {
        $("#x").text(pos.x.toFixed(2));
        $("#y").text(pos.y.toFixed(2));
            if (item) {
                if (previousPoint!=item.dataIndex) {
                    previousPoint = item.dataIndex;
                   
                    $("#tooltip").remove();
                    x = item.datapoint[0].toFixed(0),
                    y = item.datapoint[1].toFixed(2);
                 
                    showTooltip(item.pageX, item.pageY,
                              "Sample: "+slist[item.dataIndex]+"<br>TSS: "+ item.series.label +"  TPM: "+y);
                }
            }
            else {
                $("#tooltip").remove();
                previousPoint = null;           
            }
    });
// tooltip function end
 
// clicking point function
    $("#gene_exptable_chart").bind("plotclick", function (event, pos, item) {
if (item){
var vdata = Math.round($('#gene_exptable').height())/item.series.data.length*item.dataIndex;
$('#gene_exptable_wrapper .dataTables_scrollBody').animate({ scrollTop: vdata-150 }, 'slow');
$("#gene_exptable_wrapper .dataTables_scrollBody tbody td").removeClass('highlight');
$('#gene_exptable_wrapper .dataTables_scrollBody tbody tr:eq(' + item.dataIndex+ ') td').addClass('highlight');
}
     });
// clicking point function end
 
 
 
 
 
} );
</script>
</html>
 
<includeonly>{{#gene_exptable:{{#explode:{{PAGENAME}}|:|0}}
|{{#replace:{{{short_description}}}|,|}},{{{phase1_expression}}}
}}</includeonly>
<br>
<br>
<div id="gene_exptable_chart" style="float:left;width:600px;height:300px;"></div>
<br>
<div id="gene_exptable_chart_chkbox" style="float:left;"></div>
<div style="clear:both;"></div>
 
 
*Click each plot point to find sample in table
<br>
{{Fontsize|3| Ontology-based sample term enrichment analysis}}{{#info:<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji
<br><br>link to source dataset<br>
[//fantom.gsc.riken.jp/5/datafiles/latest/extra/Sample_ontology_enrichment_of_CAGE_peaks/ data]
}}
----
<html>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
 
<style type="text/css" title="currentStyle">
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
.table_title{
text-align:left;
font-size:small;
text-decoration:underline;
color:darkgoldenrod;
}
</style>
<script type="text/javascript">
 
$(document).ready(function() {
     var oTable =  $('.enrichment_list').DataTable({
         dom: 'frtip',
scrollCollapse: false,
         columnDefs: [{ orderable: false, targets: [ 0 ] },  { type: "html-num", width: "50pt", targets: [1] }],
order: [[ 1, "asc" ]]
});
 
 
});
});
// -->
</script>
</script>
</html>
</html>
{{#if:{{{ontology_enrichment_celltype_v019_2}}}|
<div style="float:left;width:33%;">
<table class="enrichment_list stripe cell-border order-column compact"><caption class="table_title">Cell type</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html>
{{#arraymap:{{{ontology_enrichment_celltype_v019_2}}}|;|$
|{{#set:ffcp_ontology_enrichment_celltype={{#replace:$|,|;}}}}{{#ifexist:{{#explode:$|,|0}}|<tr><td>[[{{#explode:$|,|0}}|{{#show:{{#explode:$|,|0}}|?name}}]]</td><td>{{#explode:$|,|1}}</td><td>{{#explode:$|,|2}}</td></tr>| }}
|}}
<html></tbody></html></table>
</div>
}}{{#if:{{{ontology_enrichment_uberon_v019_2}}}|
<div style="float:left;width:33%;">
<table class="enrichment_list stripe cell-border order-column compact"><caption class="table_title">Uber anatomy</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html>
{{#arraymap:{{{ontology_enrichment_uberon_v019_2}}}|;|$
|{{#set:ffcp_ontology_enrichment_uberon={{#replace:$|,|;}}}}{{#ifexist:{{#explode:$|,|0}}|<tr><td>[[{{#explode:$|,|0}}|{{#show:{{#explode:$|,|0}}|?name}}]]</td><td>{{#explode:$|,|1}}</td><td>{{#explode:$|,|2}}</td></tr>| }}
|}}
|}}


{{#if:{{#pos:{{PAGENAME}}|mm9}}| yes | no}}
<html></tbody></html></table>
 
</div>
}}{{#if:{{{ontology_enrichment_disease_v019_2}}}|
<div style="float:left;width:33%;">
<table class="enrichment_list"><caption class="table_title">Disease</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html>
{{#arraymap:{{{ontology_enrichment_disease_v019_2}}}|;|$
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[[Category:FFCP]]
[[Category:FFCP]]

Latest revision as of 12:09, 22 September 2021

Short description:
Species:
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description:
Coexpression cluster:
Association with transcript:
EntrezGene:{{{EntrezGene}}}
HGNC: NA
UniProt: NA


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression







  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data


Cell type
Ontology termp-valuen


Uber anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen






"FFCP" is not a number.

Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.