Template:FFCP: Difference between revisions
From FANTOM5_SSTAR
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== Ontology-based sample term enrichment analysis == | == Ontology-based sample term enrichment analysis == | ||
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script> | <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script> | ||
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | ||
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}); | }); | ||
}); | }); | ||
</script> | </script> | ||
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<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | <tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | ||
<html></thead><tbody></html><tr><td> | <html></thead><tbody></html><tr><td> | ||
{{#arraymap:{{{ontology_enrichment_celltype}}}| | {{#arraymap:{{{ontology_enrichment_celltype}}}|;|$ | ||
|[[{{#explode:$| | |[[{{#explode:$|!|0}}|{{#show:{{#explode:$|!|0}}|?name}}]]</td><td>{{#explode:$|!|1}}</td><td>{{#explode:$|!|2}} | ||
|</td></tr><tr><td>}} | |</td></tr><tr><td>}} | ||
</td></tr> | </td></tr> | ||
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<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | <tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | ||
<html></thead><tbody></html><tr><td> | <html></thead><tbody></html><tr><td> | ||
{{#arraymap:{{{ontology_enrichment_uberon}}}| | {{#arraymap:{{{ontology_enrichment_uberon}}}|;|$ | ||
|[[{{#explode:$| | |[[{{#explode:$|!|0}}|{{#show:{{#explode:$|!|0}}|?name}}]]</td><td>{{#explode:$|!|1}}</td><td>{{#explode:$|!|2}} | ||
|</td></tr><tr><td>}} | |</td></tr><tr><td>}} | ||
</td></tr> | </td></tr> | ||
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<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | <tr><th>Ontology term</th><th>p-value</th><th>n</th></tr> | ||
<html></thead><tbody></html><tr><td> | <html></thead><tbody></html><tr><td> | ||
{{#arraymap:{{{ontology_enrichment_disease}}}| | {{#arraymap:{{{ontology_enrichment_disease}}}|;|$ | ||
|[[{{#explode:$| | |[[{{#explode:$|!|0}}|{{#show:{{#explode:$|!|0}}|?name}}]]</td><td>{{#explode:$|!|1}}</td><td>{{#explode:$|!|2}} | ||
|</td></tr><tr><td>}} | |</td></tr><tr><td>}} | ||
</td></tr> | </td></tr> | ||
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}} | }} | ||
<div style="clear:both;"></div> | <div style="clear:both;"></div> | ||
<!-- | |||
{{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0 | |||
|<html> | |||
|}} | |||
{{#if: {{#pos:{{{ontology_enrichment_celltype}}}|CL}} | | {{#if: {{#pos:{{{ontology_enrichment_celltype}}}|CL}} | | ||
Revision as of 10:56, 6 August 2012
| short description: | |
|---|---|
| EntrezGene: | [[EntrezGene%3A{{{EntrezGene}}}|{{{EntrezGene}}}]] |
| description: | |
| Species: | |
| association with transcript: | |
| HGNC: | |
| UniProt: |
View on UCSC genome browser OSC local mirror
Mouse over to see Genome browser image, Click image to go to Genome browser
{{#ucsc_link:Template:FFCP|https://fantom5-collaboration.gsc.riken.jp/ucsc/}}
CAGE Expression
| sample | TPM value |
|---|
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script> <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<style type="text/css" title="currentStyle"> @import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css"; @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; .table_title{ text-align:left; font-size:small; text-decoration:underline; color:darkgoldenrod; } </style> <script type="text/javascript">
$(document).ready(function() {
var oTable = $('.enrichment_list').dataTable({
"sScrollY": "300px", "bScrollCollapse": true, "bPaginate": false, "bFilter": false, "bInfo": false, "aoColumnDefs": [ { "asSorting": [ "desc", "asc" ], "aTargets": [ "_all" ] } , { "bSortable": false, "aTargets": [ 0 ] }, { "sType": "numeric", "aTargets": [1] }, { "sWidth": "50pt", "aTargets": [ 1 ] }], "aaSorting": 1, "desc" });
});
</script>
</html>
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_celltype}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_uberon}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_disease}}}|]] |
