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Template:MCL coexpression mm9: Difference between revisions

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$('#gostat_table_export_tool').before( oTableTools.dom.container );
$('#gostat_table_export_tool').before( oTableTools.dom.container );
// GOstat results table end
// GOstat results table end
// sample list for relative expression
var rexp_sample = ["Atoh1%2b%20Inner%20ear%20hair%20cells%20-%20organ%20of%20corti%2c%20pool1.CNhs12533.12158-128G7","CD326%2b%20enterocyte%20isolated%20from%20mice%2c%20treated%20with%20RANKL%2c%20day03%2c%20pool1.CNhs13242.11850-124I5","CD326%2b%20enterocyte%20isolated%20from%20mice%2c%20treated%20with%20RANKL%2c%20day03%2c%20pool2.CNhs13233.11851-124I6","CD326%2b%20enterocyte%2c%20pool1.CNhs13542.11848-124I3","CD326%2b%20enterocyte%2c%20pool2.CNhs13197.11849-124I4","CD326%2b%2b%20enterocyte%20isolated%20from%20mice%2c%20treated%20with%20RANKL%2c%20day03%2c%20pool1.CNhs13236.11852-124I7","CD326%2b%2b%20enterocyte%20isolated%20from%20mice%2c%20treated%20with%20RANKL%2c%20day03%2c%20pool2.CNhs13210.11853-124I8","CD4%2bCD25%2b%20regulatory%20T%20cells%2c%20pool2%20%28Balb_cAJcl%29.CNhs13221.11818-124E9","CD4%2bCD25-CD44-%20naive%20conventional%20T%20cells%2c%20PMA%20and%20ionomycin%20stimulation%2c%2002hr%2c%20pool1%20%28C57BL_6J%29.CNhs13219.11816-124E7","CD4%2bCD25-CD44-%20naive%20conventional%20T%20cells%2c%20PMA%20and%20ionomycin%20stimulation%2c%2002hr%2c%20pool2%20%28Balb_cAJcl%29.CNhs13226.11820-124F2","CD4%2bCD25-CD44-%20naive%20conventional%20T%20cells%2c%20antiCD3_CD28%20stimulation%2c%2006hr%2c%20pool1%20%28C57BL_6J%29.CNhs13218.11815-124E6","CD4%2bCD25-CD44-%20naive%20conventional%20T%20cells%2c%20antiCD3_CD28%20stimulation%2c%2006hr%2c%20pool2%20%28Balb_cAJcl%29.CNhs13225.11819-124F1","CD4%2bCD25-CD44-%20naive%20conventional%20T%20cells%2c%20pool1%20%28C57BL_6J%29.CNhs13217.11813-124E4","CD4%2bCD25-CD44-%20naive%20conventional%20T%20cells%2c%20pool2%20%28Balb_cAJcl%29.CNhs13220.11817-124E8","CD41%2b%20megakaryocyte%20cancer%2c%20donor1.CNhs13079.11774-124A1","CD41%2b%20megakaryocyte%20cancer%2c%20donor2.CNhs13213.11776-124A3","CD41%2b%20megakaryocyte%20cancer%2c%20donor3.CNhs13506.11778-124A5","CD41%2b%20megakaryocyte%20control%2c%20donor1.CNhs13212.11775-124A2","CD41%2b%20megakaryocyte%20control%2c%20donor2.CNhs13214.11777-124A4","CD41%2b%20megakaryocyte%20control%2c%20donor3.CNhs13201.11779-124A6","Clontech%20Mouse%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10609.10001-101A3","EBF%20KO%20HPCs%20induced%20to%20T%20cell%2c%2000hr00min%2c%20biol_rep1.CNhs11058.12972-138H2","EBF%20KO%20HPCs%20induced%20to%20T%20cell%2c%2000hr00min%2c%20biol_rep2.CNhs12980.12988-138I9","Follicle%20Associated%20Epithelium%2c%20pool2.CNhs13211.10262-104D1","Follicle%20Associated%20Epithelium%2c%20pool3.CNhs13200.10263-104D2","GP2%2b%20M%20cell%2c%20pool1.CNhs13228.11845-124H9","GP2%2b%20M%20cell%2c%20pool2.CNhs13231.11846-124I1","GP2%2b%20M%20cell%2c%20pool3.CNhs13240.11847-124I2","Ileum%20epithelium%2c%20pool1.CNhs13199.10252-104B9","Ileum%20epithelium%2c%20pool2.CNhs13232.10253-104C1","Ileum%20epithelium%2c%20treated%20with%20RANKL%2c%20day03%2c%20pool3.CNhs13234.10260-104C8","J2E%20erythroblastic%20leukemia%20response%20to%20erythropoietin%2c%2000hr00min%2c%20biol_rep1.CNhs12449.13063-139I3","J2E%20erythroblastic%20leukemia%20response%20to%20erythropoietin%2c%2000hr00min%2c%20biol_rep2.CNhs12668.13129-140G6","J2E%20erythroblastic%20leukemia%20response%20to%20erythropoietin%2c%2000hr00min%2c%20biol_rep3.CNhs12770.13195-141E9","Lgr5%20positive%20intestinal%20stem%20cells%2c%20pool1.CNhs12555.12228-129F5","Lgr5%20positive%20intestinal%20stem%20cells%2c%20pool2.CNhs12556.12229-129F6","Lgr5%20positive%20intestinal%20stem%20cells%2c%20pool3.CNhs12557.12230-129F7","MC1%2bGr1%2b%20myeloid-derived%20suppressor%20cells%20cancer%2c%20donor1%20%2810%2c11%2c12%203LL%29.CNhs12539.12159-128G8","MC1%2bGr1%2b%20myeloid-derived%20suppressor%20cells%20cancer%2c%20donor2%20%280127%203LL%29.CNhs12198.12161-128H1","MC1%2bGr1%2b%20myeloid-derived%20suppressor%20cells%20cancer%2c%20donor3%20%280128%203LL%29.CNhs12542.12163-128H3","MC1%2bGr1%2b%20myeloid-derived%20suppressor%20cells%20control%2c%20donor1%20%284%2c5%2c6PBS%29.CNhs12540.12160-128G9","MC1%2bGr1%2b%20myeloid-derived%20suppressor%20cells%20control%2c%20donor2%20%280127%20PBS%29.CNhs12541.12162-128H2","MC1%2bGr1%2b%20myeloid-derived%20suppressor%20cells%20control%2c%20donor3%20%280128%20PBS%29.CNhs12543.12164-128H4","Mouse%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20biol_rep1.CNhs11055.11484-119D8","Mouse%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20biol_rep2.CNhs11056.11485-119D9","Mouse%20Aortic%20Smooth%20Muscle%20cells%2c%20donor1.CNhs11297.11299-117B3","Mouse%20Astrocytes%20-%20cerebellar%2c%20donor1.CNhs13077.11708-123B7","Mouse%20Astrocytes%20-%20cerebellar%2c%20donor2.CNhs12076.11550-120C2","Mouse%20Astrocytes%20-%20hippocampus%2c%20donor1.CNhs12129.11709-123B8","Mouse%20Astrocytes%20-%20hippocampus%2c%20donor2.CNhs12077.11551-120C3","Mouse%20Astrocytes%2c%20donor2.CNhs12078.11552-120C4","Mouse%20Astrocytes%2c%20donor3.CNhs12107.11633-122C4","Mouse%20CD19%2b%20B%20Cells%2c%20donor1.CNhs13531.11856-125A2","Mouse%20CD4%2b%20T%20Cells%2c%20donor1.CNhs13509.11854-124I9","Mouse%20CD8%2b%20T%20Cells%2c%20donor1.CNhs13511.11855-125A1","Mouse%20Cardiac%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y%2c%20embryo%20E17%2e5%2c%20pool1%20%28internal%20control%29.CNhs11246.3139-67G5","whole%20body%2c%20embryo%20E17%2e5%2c%20pool1%20%28internal%20control%29.CNhs11278.3139-67G5","whole%20body%2c%20embryo%20E17%2e5.CNhs10513.490-9F9","whole%20body%2c%20embryo%20E17.CNhs10517.475-3I5","whole%20body%2c%20embryo%20E18.CNhs10516.493-3B3","whole%20body%2c%20neonate%20N00.CNhs10525.657-19C2","whole%20body%2c%20neonate%20N01.CNhs10576.659-23C6","whole%20body%2c%20neonate%20N06.CNhs10515.692-21D1","whole%20body%2c%20neonate%20N10.CNhs10518.761-6B4"];
// median table
var rexp_median_data = [];
var rexp_median_values = [</html>{{{coexpression_dpi_cluster_scores_median}}}<html>];
//var rexp_median_values = ["0.003","200","1.36e-30"];
for(i1=0;i1<389;i1++){
rexp_median_data.push([rexp_sample[i1], rexp_median_values[i1]]);
}
    $('#coexpression_dpi_cluster_scores_median_table').dataTable({
"sScrollY": "300px",
"bScrollCollapse": true,
"bPaginate": false,
"bFilter": true,
"bInfo": false,
"aaData": rexp_median_data,
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
var id = obj.aData[ obj.iDataColumn ];
var elems = id.split('.');
return sReturn = "<a href=\"/resource_browser/FF:"+elems[2]+"\">"+decodeURIComponent(elems[0])+" "+elems[1]+"</a>";
} },{ "sTitle": "Score", "sType": "numeric" }],
"aaSorting": [[ 1, "desc" ]],
});


} );
} );
</script>
</script>


Line 49: Line 76:
|no results for this coexpression
|no results for this coexpression
}}
}}
== Relative expression of the co-expression cluster -Median- ==
{{#info: <br>Analyst: }}
<table id="coexpression_dpi_cluster_scores_median_table"></table>


[[Category:MCL_coexpression_mm9]]
[[Category:MCL_coexpression_mm9]]

Revision as of 14:26, 11 October 2012



Phase1 CAGE Peaks

GOStat results on Coexpression cluster

The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner

GO IDGO nameFDR corrected p-value
{{{gostat_on_MCL_coexpression}}}


Relative expression of the co-expression cluster -Median-

<br>Analyst:

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