Template:MCL coexpression mm9: Difference between revisions
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== TFBS overrepresentation == | |||
{{#info:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <br>Analyst: Michiel de Hoon}} | |||
<html> | |||
<script type="text/javascript"> | |||
$(document).ready(function() { | |||
var motifs = ['motif1_TCGNAG','motif2_GCTGGAGG','motif3_CGCTNA','motif4_TGTCTA','motif5_CAGTGT','motif6_AAGACT','motif7_CGNATC','motif8_CCATGN','motif9_ANGGCT','motif10_SCGGAGASN','motif11_GCGANT','motif12_ACTAAG','motif13_GAGGATGCK','motif14_TCNACG','motif15_ACTGTG','motif16_ACCAG','motif17_CGCTAN','motif18_CATCAG','motif19_GYTGGMC','motif20_TGNAGC','motif21_TCTTGA','motif22_GGMCTG','motif23_CGCNAT','motif24_AGAACT','motif25_GATCCN','motif26_CTCCGCAGTA','motif27_CCTGCA','motif28_CGTNCA','motif29_TAGCTCGGCT','motif30_AGNTCC','motif31_AGNCGT','motif32_TRGNMCTNNT','motif33_AGAGCATGAGACGG','motif34_GANCCT','motif35_CGCCYAGA','motif36_AAGGAGRAN','motif37_GCTCGCA','motif38_TCGNCA','motif39_CCAAGT','motif40_ATGCGGAGGAG','motif41_TSACAA','motif42_CGNTCA','motif43_CCCWGT','motif44_TGAAGST','motif45_GCTCNGG','motif46_CGNAGT','motif47_CGAGTN','motif48_CANTCG','motif49_ACAGRG','motif50_GTCCNA','motif51_CGGNTA','motif52_CGNATG','motif53_ANGCTG','motif54_CGNGTA','motif55_CGTTATAGCC','motif56_GANCGT','motif57_AGGCAT','motif58_CGGNAT','motif59_NCWCCARNR','motif60_GCGNAT','motif61_KAYMGMTN','motif62_CGNGAT','motif63_GTNCCA','motif64_AGTCGN','motif65_TNGCGA','motif66_ACCGRTCA','motif67_GNTAAC','motif68_CTTTTAAAC','motif69_RYKNAAATC','motif70_MAATCGC','motif71_CTCCGCW','motif72_CAGAAMC','motif73_GAGCKMGC','motif74_TTKAAAY','motif75_AGCCGAGCGCT','motif76_GGAGCAGCCAAT','motif77_TCCTTGG','motif78_NCGNWGCAWN','motif79_ACATCTACAA','motif80_CTCTGAGAGAA','motif81_NGCAGAA','motif82_TTGAATCGCGG','motif83_TTWTAAA','motif84_GGKTTYT','motif85_TWNNGCSNA','motif86_CGCACAGACCGCGC','motif87_RCGCACWS','motif88_CCCTCTTT','motif89_CGCCGTGTTTA','motif90_TTATATCGC','motif91_TTCTTTCG','motif92_GCGKWWNAA','motif93_TANTMTCTRWAT','motif94_CATYTSA','motif95_AGCGAGCTAGC','motif96_TKNTTCTGTCTN','motif97_TTCCCT','motif98_GCCGAAGATT','motif99_GYGTSANACG','motif100_GCYTNCTC','motif101_NAGCAASA','motif102_GCAAMGT','motif103_CGGCTAWWT','motif104_GTWSGMT','motif105_KTNGNAGWMG','motif106_KCGCANTC','motif107_CGTCTGCGTA','motif108_AACKSARM','motif109_TCNMTMGC','motif110_AGTCGCAGCG','motif111_WWAATYCGCTCC','motif112_CGYGYAWT','motif113_YGAGCTRTG','motif114_AAACCCGCTC','motif115_CATCAACTAC','motif116_CCAARA','motif117_SKSNGCGCTSN','motif118_AATCCGGCT','motif119_TCAAAANCG','motif120_TTSMTGNNGKTG','motif121_TGCAWTGTA','motif122_TACAAYGGM','motif123_TTGATGCAGTGA','motif124_AATNCANCACT','motif125_TTTAACTCGT','motif126_AATGCAGTCG','motif127_TTTTTACCCTC','motif128_NNGNATRCGWN','motif129_CTCGTAATCT','motif130_TTTCAAACNCCC','motif131_CTGCTTAAATA','motif132_TCRCCAGWY','motif133_TWTAWAGTWGRAG','motif134_ATAAGAGAGGC','motif135_TNKYTGCAKA','motif136_GTCTGCGTCTCT','motif137_MAACAGAAGY','motif138_CTTTWANNYCC','motif139_CGTTCGAATT','motif140_WTAAATAACG','motif141_TTAAACGGC','motif142_TCATATAGAGAAGC','motif143_ATGATGTG','motif144_AAKCMSGT','motif145_GMAGWCGMAW','motif146_AGACGAAGA','motif147_ATATCCAGTG','motif148_NTCSYSTYT','motif149_CAAGCTGTACA','motif150_AGCACAGGCG','motif151_GCCYGTGCMKCW','motif152_GCKYRMKCGS','motif153_ACTYNYYATYG','motif154_GRWGGCAARCG','motif155_AATARSTCCC','motif156_ACTGTAGGACMT','motif157_AAACTWACC','motif158_SRCGWYACA','motif159_ACACATACTACA','motif160_AGCCGGTAACG','motif161_CGGCTTGATT','motif162_AGTTACCGTCA','motif163_GARTCGCCCTGTNA','motif164_AGCCGATTTG','motif165_AAAGTTACTG','motif166_TAMAACTTTGS','motif167_TTGGGTAGGAG','motif168_TCTCAGAGTATAAA','motif169_GCCTGGCC']; | |||
var pval = [</html>{{{tfbs_overrepresentation_for_novel_motifs}}}<html>]; | |||
var data = []; | |||
for(i1=0;i1<motifs.length;i1++){ | |||
data.push([motifs[i1],pval[i1]]); | |||
} | |||
$('#tfbs_overexpression_table').dataTable({ | |||
//"aaData": [["one", 1],["two", 3],["three", 0]], | |||
"sScrollY": "300px", | |||
"bScrollCollapse": true, | |||
"bPaginate": false, | |||
"bFilter": false, | |||
"bInfo": false, | |||
"aaData": data, | |||
"aoColumns": [{ "sTitle": "Motifs", "sWidth": "200pt"},{ "sTitle": "p-value" }], | |||
"aaSorting": [[ 1, "asc" ]], | |||
}); | |||
}); | |||
</script> | |||
<table id="tfbs_overexpression_table"></table> | |||
</html> | |||
{{#set:cp_member_count={{#ask:[[Category:FFCP]][[Species::Mouse (Mus musculus)]][[MCL_coexpression_id::{{PAGENAME}}]]|format=count}}}} | {{#set:cp_member_count={{#ask:[[Category:FFCP]][[Species::Mouse (Mus musculus)]][[MCL_coexpression_id::{{PAGENAME}}]]|format=count}}}} | ||
[[Category:MCL_coexpression_mm9]] | [[Category:MCL_coexpression_mm9]] | ||
Revision as of 14:54, 26 November 2012
Phase1 CAGE Peaks
GOStat results on Coexpression cluster
The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| {{{gostat_on_MCL_coexpression}}} |
Relative expression of the co-expression cluster -Median-
<br>Analyst:
"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.
Ontology enrichment
<br>Analyst:
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_celltype}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_uberon}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_disease}}}|]] |
TFBS overrepresentation
The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <br>Analyst: Michiel de Hoon
