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     $('#coexpression_dpi_cluster_scores_median_table').dataTable({
     $('#coexpression_dpi_cluster_scores_median_table').dataTable({
"sScrollY": "300px",
"sScrollY": "300px",
"bScrollCollapse": true,
                "bScrollCollapse": true,
"bPaginate": false,
"bPaginate": true,
"bFilter": true,
"bFilter": true,
"bInfo": false,
"bInfo": true,
                "iDisplayLength": 10,
"aLengthMenu": [[10, 50, -1], [10, 50, "All"]],
"aaData": rexp_median_data,
"aaData": rexp_median_data,
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
Line 37: Line 39:
return sReturn = "<a href=\"/resource_browser/FF:"+elems[2]+"\">"+decodeURIComponent(elems[0])+" "+elems[1]+"</a>";
return sReturn = "<a href=\"/resource_browser/FF:"+elems[2]+"\">"+decodeURIComponent(elems[0])+" "+elems[1]+"</a>";
} },{ "sTitle": "Score", "sType": "numeric" }],
} },{ "sTitle": "Score", "sType": "numeric" }],
"aaSorting": [[ 1, "desc" ]],
"aaSorting": [[ 1, "desc" ]]
});
});


Line 43: Line 45:
$('.enrichment_list').dataTable({
$('.enrichment_list').dataTable({
"sScrollY": "300px",
"sScrollY": "300px",
"bScrollCollapse": true,
                "bScrollCollapse": true,
"bPaginate": false,
"bPaginate": true,
"bFilter": false,
"bFilter": true,
"bInfo": false,
"bInfo": true,
                "iDisplayLength": 10,
"aLengthMenu": [[10, 50, -1], [10, 50, "All"]],
"aoColumnDefs": [{ "bSortable": false, "aTargets": [ 0 ] },  { "sType": "numeric", "aTargets": [1] }, { "sWidth": "50pt", "aTargets": [ 1 ] }],
"aoColumnDefs": [{ "bSortable": false, "aTargets": [ 0 ] },  { "sType": "numeric", "aTargets": [1] }, { "sWidth": "50pt", "aTargets": [ 1 ] }],
"aaSorting": [[ 1, "asc" ]]
"aaSorting": [[ 1, "asc" ]]
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// GOstat results table start
// GOstat results table start
     var oTable =  $('#gostat_table').dataTable({
     var oTable =  $('#gostat_table').dataTable({
"iDisplayLength": 10,
"sScrollY": "300px",
                "bScrollCollapse": true,
"bPaginate": true,
"bFilter": true,
"bInfo": true,
                "iDisplayLength": 10,
"aLengthMenu": [[10, 50, -1], [10, 50, "All"]],
"aLengthMenu": [[10, 50, -1], [10, 50, "All"]],
"aoColumnDefs": [ { "sType": "numeric", "aTargets": [2] }],
"aoColumnDefs": [ { "sType": "numeric", "aTargets": [2] }],
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   var tfbs_overexpression_novel_table_obj= $('#tfbs_overexpression_table').dataTable({
   var tfbs_overexpression_novel_table_obj= $('#tfbs_overexpression_table').dataTable({
"sScrollY": "300px",
"sScrollY": "300px",
"bScrollCollapse": true,
                "bScrollCollapse": true,
"bPaginate": false,
"bPaginate": true,
"bFilter": false,
"bFilter": true,
"bInfo": false,
"bInfo": true,
                "iDisplayLength": 10,
"aLengthMenu": [[10, 50, -1], [10, 50, "All"]],
"aaData": data,
"aaData": data,
"aoColumns": [{ "sTitle": "Motifs", "sWidth": "200pt", "fnRender": function ( o, val ) {var elem = o.aData[0].split("_"); return "<a href=\"/resource_browser/Novel_motif:"+elem[0].replace('motif', '')+"\">"+o.aData[0]+"</a>";}},{ "sTitle": "-log10(p-value)" }],
"aoColumns": [{ "sTitle": "Motifs", "sWidth": "200pt", "fnRender": function ( o, val ) {var elem = o.aData[0].split("_"); return "<a href=\"/resource_browser/Novel_motif:"+elem[0].replace('motif', '')+"\">"+o.aData[0]+"</a>";}},{ "sTitle": "-log10(p-value)" }],
"aaSorting": [[ 1, "desc" ]],
"aaSorting": [[ 1, "desc" ]]
});
});
   var tfbs_overexpression_novel_table_objtool = new TableTools(  tfbs_overexpression_novel_table_obj, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
   var tfbs_overexpression_novel_table_objtool = new TableTools(  tfbs_overexpression_novel_table_obj, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
Line 178: Line 189:
   var tfbs_overexpression_jaspar_table_obj=$('#tfbs_overexpression_jaspar').dataTable({
   var tfbs_overexpression_jaspar_table_obj=$('#tfbs_overexpression_jaspar').dataTable({
"sScrollY": "300px",
"sScrollY": "300px",
"bScrollCollapse": true,
                "bScrollCollapse": true,
"bPaginate": false,
"bPaginate": true,
"bFilter": false,
"bFilter": true,
"bInfo": false,
"bInfo": true,
                "iDisplayLength": 10,
"aLengthMenu": [[10, 50, -1], [10, 50, "All"]],
"aoColumnDefs": [{ "sWidth": "200pt", "fnRender": function ( o, val ) {return "<a href=\"/resource_browser/JASPAR_motif:"+o.aData[0]+"\">"+o.aData[0]+"</a>";}, "aTargets": [ 0 ] }],
"aoColumnDefs": [{ "sWidth": "200pt", "fnRender": function ( o, val ) {return "<a href=\"/resource_browser/JASPAR_motif:"+o.aData[0]+"\">"+o.aData[0]+"</a>";}, "aTargets": [ 0 ] }],
"aaSorting": [[ 1, "desc" ]],
"aaSorting": [[ 1, "desc" ]]
});
});
  var tfbs_overexpression_jaspar_table_objtool = new TableTools( tfbs_overexpression_jaspar_table_obj, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
  var tfbs_overexpression_jaspar_table_objtool = new TableTools( tfbs_overexpression_jaspar_table_obj, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});

Revision as of 15:32, 10 February 2014


Phase1 CAGE Peaks

GOStat results on Coexpression cluster

The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner


GO IDGO nameFDR corrected p-value
{{{gostat_on_MCL_coexpression}}}


Relative expression of the co-expression cluster -Median-

<br>Analyst:

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.


Ontology enrichment

<br>Analyst:

Cell Type
Ontology termp-valuen
[[{{{ontology_enrichment_celltype}}}|]]
Uber Anatomy
Ontology termp-valuen
[[{{{ontology_enrichment_uberon}}}|]]
Disease
Ontology termp-valuen
[[{{{ontology_enrichment_disease}}}|]]


TFBS overrepresentation

The values shown are the p-values for over-representation of the motif in this co-expression cluster. So a small p-value means a strong over-representation. <br>Analyst: Michiel de Hoon

Novel motifs

JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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