Personal tools

UBERON:0000162

From FANTOM5_SSTAR

Revision as of 17:07, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:cloaca
Namespace:FANTOM
Definition:"Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
Xrefs:
links:

AAO:0000095
GAID:1206
MESH:A.13.223
ncithesaurus:Cloaca
SCTID:362857006
TAO:0000330
VHOG:0001186
XAO:0000244

ZFA:0000330
Synonyms: "cloacal chamber" RELATED []
"vent" RELATED []
Comments:Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000481(multi-tissue structure),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0001555(digestive tract),UBERON:0004122(genitourinary system)



Children

is a:UBERON:0000163 (embryonic cloaca)
part of:UBERON:0012481 (cloacal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000162 (cloaca), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
4.58e-44FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_10f68facfbb7399895e5c2ac3d49a695p@chr1:132699659..132699668, +
4.58e-44FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_10f68facfbb7399895e5c2ac3d49a695p@chr1:132699659..132699668, +
1.7e-39FFCP PHASE1:Mm9::chr15:58237385..58237400,+#_33633447503fc13438e784bddfd0b0b9p@chr15:58237385..58237400, +
1.7e-39FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_33633447503fc13438e784bddfd0b0b9p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_33633447503fc13438e784bddfd0b0b9p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_33633447503fc13438e784bddfd0b0b9p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425825..96425834,-#_33633447503fc13438e784bddfd0b0b9p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_33633447503fc13438e784bddfd0b0b9p@chr9:96425983..96425992, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_33633447503fc13438e784bddfd0b0b9p@chr9:96425983..96425992, +
1.7e-39FFCP PHASE2:Mm9::chr15:58237385..58237400,+#_33633447503fc13438e784bddfd0b0b9p@chr15:58237385..58237400, +
2.66e-39FFCP PHASE1:Mm9::chr7:28900349..28900364,-#_2107f23b16fe2911712a493b9b1a6304p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr7:28924794..28924814,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE2:Mm9::chr7:55028037..55028075,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520368..124520379,+#_2107f23b16fe2911712a493b9b1a6304p4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr9:36337031..36337049,-#_2107f23b16fe2911712a493b9b1a6304p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE1:Mm9::chr19:11353922..11353934,-#_2107f23b16fe2911712a493b9b1a6304p@chr19:11353922..11353934, -
2.66e-39FFCP PHASE2:Mm9::chr6:124520322..124520333,+#_2107f23b16fe2911712a493b9b1a6304p3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr6:124520368..124520379,+#_2107f23b16fe2911712a493b9b1a6304p4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr7:28922549..28922561,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE1:Mm9::chr9:120464717..120464741,+#_2107f23b16fe2911712a493b9b1a6304p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr9:120464717..120464741,+#_2107f23b16fe2911712a493b9b1a6304p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr7:28924794..28924814,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE2:Mm9::chr7:28914450..28914477,+#_2107f23b16fe2911712a493b9b1a6304p2@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr6:42547567..42547580,-#_2107f23b16fe2911712a493b9b1a6304p4@Fam115e
2.66e-39FFCP PHASE1:Mm9::chr9:120464756..120464765,+#_2107f23b16fe2911712a493b9b1a6304p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520322..124520333,+#_2107f23b16fe2911712a493b9b1a6304p3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr9:120464756..120464765,+#_2107f23b16fe2911712a493b9b1a6304p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE2:Mm9::chr5:120136866..120136874,+#_2107f23b16fe2911712a493b9b1a6304p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr9:36337031..36337049,-#_2107f23b16fe2911712a493b9b1a6304p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE1:Mm9::chr7:28914450..28914477,+#_2107f23b16fe2911712a493b9b1a6304p2@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28914478..28914498,+#_2107f23b16fe2911712a493b9b1a6304p3@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28900349..28900364,-#_2107f23b16fe2911712a493b9b1a6304p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr5:120136866..120136874,+#_2107f23b16fe2911712a493b9b1a6304p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr6:42547567..42547580,-#_2107f23b16fe2911712a493b9b1a6304p4@Fam115e
2.66e-39FFCP PHASE1:Mm9::chr7:28922549..28922561,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE2:Mm9::chr19:11353922..11353934,-#_2107f23b16fe2911712a493b9b1a6304p@chr19:11353922..11353934, -
2.66e-39FFCP PHASE1:Mm9::chr7:28914478..28914498,+#_2107f23b16fe2911712a493b9b1a6304p3@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr7:55028037..55028075,+#_2107f23b16fe2911712a493b9b1a6304p@chr7:55028037..55028075, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_43f6be8aecdc427b7459cacf9106d116p@chr10:91567075..91567084, +
2.02e-32FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_43f6be8aecdc427b7459cacf9106d116p@chr10:91567053..91567066, +
2.02e-32FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_43f6be8aecdc427b7459cacf9106d116p@chr10:91567075..91567084, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_43f6be8aecdc427b7459cacf9106d116p@chr10:91567053..91567066, +
4.03e-30FFCP PHASE1:Mm9::chr14:32955207..32955211,+#_66afd312bc0e8f7a97a6696e6b9a3b24p1@Msmb
4.03e-30FFCP PHASE2:Mm9::chr7:31397780..31397790,-#_66afd312bc0e8f7a97a6696e6b9a3b24p3@Upk1a
4.03e-30FFCP PHASE2:Mm9::chr3:92288406..92288413,-#_66afd312bc0e8f7a97a6696e6b9a3b24p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr7:114836670..114836681,+#_66afd312bc0e8f7a97a6696e6b9a3b24p@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr7:31397780..31397790,-#_66afd312bc0e8f7a97a6696e6b9a3b24p3@Upk1a
4.03e-30FFCP PHASE1:Mm9::chr3:92288406..92288413,-#_66afd312bc0e8f7a97a6696e6b9a3b24p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr14:32955207..32955211,+#_66afd312bc0e8f7a97a6696e6b9a3b24p1@Msmb
4.03e-30FFCP PHASE1:Mm9::chr7:114836670..114836681,+#_66afd312bc0e8f7a97a6696e6b9a3b24p@chr7:114836670..114836681, +
5.61e-30FFCP PHASE1:Mm9::chr18:44429795..44429800,+#_7a2b4c988cd60b838ccc465a634e33f1p3@Npy6r
5.61e-30FFCP PHASE2:Mm9::chr17:27866019..27866031,-#_7a2b4c988cd60b838ccc465a634e33f1p2@Spdef
5.61e-30FFCP PHASE2:Mm9::chrX:75093379..75093383,+#_7a2b4c988cd60b838ccc465a634e33f1p@chrX:75093379..75093383, +
5.61e-30FFCP PHASE2:Mm9::chr6:42547375..42547383,-#_7a2b4c988cd60b838ccc465a634e33f1p10@Fam115e
5.61e-30FFCP PHASE1:Mm9::chr9:36341608..36341609,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:36341608..36341609, -
5.61e-30FFCP PHASE1:Mm9::chr8:126864466..126864469,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr8:126864466..126864469, +
5.61e-30FFCP PHASE1:Mm9::chr6:42541927..42541932,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42541927..42541932, -
5.61e-30FFCP PHASE1:Mm9::chr19:34791339..34791346,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr19:34791339..34791346, -
5.61e-30FFCP PHASE2:Mm9::chr6:42541927..42541932,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42541927..42541932, -
5.61e-30FFCP PHASE1:Mm9::chr6:42536830..42536841,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42536830..42536841, -
5.61e-30FFCP PHASE2:Mm9::chr14:29722238..29722242,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr14:29722238..29722242, -
5.61e-30FFCP PHASE2:Mm9::chr6:42536830..42536841,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42536830..42536841, -
5.61e-30FFCP PHASE1:Mm9::chr15:101506963..101506974,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr15:101506963..101506974, +
5.61e-30FFCP PHASE2:Mm9::chr16:96752893..96752921,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr16:96752893..96752921, +
5.61e-30FFCP PHASE1:Mm9::chr19:58073599..58073605,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr19:58073599..58073605, +
5.61e-30FFCP PHASE2:Mm9::chr6:42548966..42548969,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42548966..42548969, -
5.61e-30FFCP PHASE2:Mm9::chr12:66314493..66314501,-#_7a2b4c988cd60b838ccc465a634e33f1p1@uc007nrj.1
5.61e-30FFCP PHASE1:Mm9::chr16:20188864..20188875,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr16:20188864..20188875, +
5.61e-30FFCP PHASE2:Mm9::chr17:24172292..24172300,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr17:24172292..24172300, +
5.61e-30FFCP PHASE2:Mm9::chr10:77520043..77520048,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr10:77520043..77520048, +
5.61e-30FFCP PHASE1:Mm9::chr10:77520043..77520048,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr10:77520043..77520048, +
5.61e-30FFCP PHASE2:Mm9::chr12:89223836..89223840,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr12:89223836..89223840, +
5.61e-30FFCP PHASE2:Mm9::chr6:42535757..42535772,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42535757..42535772, -
5.61e-30FFCP PHASE2:Mm9::chr2:80164541..80164545,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr2:80164541..80164545, +
5.61e-30FFCP PHASE1:Mm9::chrX:75093379..75093383,+#_7a2b4c988cd60b838ccc465a634e33f1p@chrX:75093379..75093383, +
5.61e-30FFCP PHASE1:Mm9::chr6:42548119..42548136,-#_7a2b4c988cd60b838ccc465a634e33f1p12@Fam115e
5.61e-30FFCP PHASE1:Mm9::chr4:138419516..138419520,-#_7a2b4c988cd60b838ccc465a634e33f1p14@Pla2g5
5.61e-30FFCP PHASE1:Mm9::chr6:42535757..42535772,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42535757..42535772, -
5.61e-30FFCP PHASE1:Mm9::chr6:42539866..42539870,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42539866..42539870, -
5.61e-30FFCP PHASE2:Mm9::chr16:20188864..20188875,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr16:20188864..20188875, +
5.61e-30FFCP PHASE1:Mm9::chr6:42547389..42547396,-#_7a2b4c988cd60b838ccc465a634e33f1p14@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr6:42539866..42539870,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:42539866..42539870, -
5.61e-30FFCP PHASE1:Mm9::chr15:101522998..101523006,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr15:101522998..101523006, -
5.61e-30FFCP PHASE1:Mm9::chr6:22342065..22342073,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr6:22342065..22342073, -
5.61e-30FFCP PHASE2:Mm9::chr15:84847637..84847642,+#_7a2b4c988cd60b838ccc465a634e33f1p3@Upk3a
5.61e-30FFCP PHASE1:Mm9::chr11:57320631..57320636,-#_7a2b4c988cd60b838ccc465a634e33f1p5@Fam114a2
5.61e-30FFCP PHASE2:Mm9::chr8:126864466..126864469,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr8:126864466..126864469, +
5.61e-30FFCP PHASE2:Mm9::chr10:75355747..75355754,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr10:75355747..75355754, -
5.61e-30FFCP PHASE1:Mm9::chr9:7699504..7699515,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:7699504..7699515, +
5.61e-30FFCP PHASE1:Mm9::chr9:109794961..109794968,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:109794961..109794968, -
5.61e-30FFCP PHASE2:Mm9::chr19:34791339..34791346,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr19:34791339..34791346, -
5.61e-30FFCP PHASE1:Mm9::chr12:114453231..114453265,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr12:114453231..114453265, -
5.61e-30FFCP PHASE2:Mm9::chrX:75093387..75093390,-#_7a2b4c988cd60b838ccc465a634e33f1p@chrX:75093387..75093390, -
5.61e-30FFCP PHASE1:Mm9::chr9:122970758..122970759,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:122970758..122970759, +
5.61e-30FFCP PHASE1:Mm9::chr10:75355747..75355754,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr10:75355747..75355754, -
5.61e-30FFCP PHASE2:Mm9::chr6:42547389..42547396,-#_7a2b4c988cd60b838ccc465a634e33f1p14@Fam115e
5.61e-30FFCP PHASE1:Mm9::chr17:24078882..24078896,+#_7a2b4c988cd60b838ccc465a634e33f1p2@Sbp
5.61e-30FFCP PHASE2:Mm9::chr9:7699504..7699515,+#_7a2b4c988cd60b838ccc465a634e33f1p@chr9:7699504..7699515, +
5.61e-30FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_7a2b4c988cd60b838ccc465a634e33f1p@chr15:36485068..36485103, -
5.61e-30FFCP PHASE1:Mm9::chr15:84847637..84847642,+#_7a2b4c988cd60b838ccc465a634e33f1p3@Upk3a










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.