Personal tools

UBERON:0001005

From FANTOM5_SSTAR

Revision as of 08:13, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:respiratory airway
Namespace:FANTOM
Definition:"An airway through which respiratory air passes in organisms." [Wikipedia:Trachea]
Xrefs:
links:
SCTID:361380005
Comments:This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED)
Alt_id: UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118
Subset: grouping_class
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003103(compound organ)
part_of:UBERON:0001004(respiratory system)



Children

is a:UBERON:0000065 (respiratory tract),UBERON:0003127 (open tracheal system trachea)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001005 (respiratory airway), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_da6a027fa21323dc271a7267aa350cdbp@chr13:115644652..115644657, -
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_da6a027fa21323dc271a7267aa350cdbp@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_da6a027fa21323dc271a7267aa350cdbp@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_da6a027fa21323dc271a7267aa350cdbp@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_da6a027fa21323dc271a7267aa350cdbp@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_da6a027fa21323dc271a7267aa350cdbp@chr6:147205677..147205683, +
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_da6a027fa21323dc271a7267aa350cdbp@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_da6a027fa21323dc271a7267aa350cdbp@chr9:110941246..110941254, +
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_da6a027fa21323dc271a7267aa350cdbp@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_da6a027fa21323dc271a7267aa350cdbp@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_da6a027fa21323dc271a7267aa350cdbp@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_da6a027fa21323dc271a7267aa350cdbp@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_da6a027fa21323dc271a7267aa350cdbp@chr1:151954385..151954387, +
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_da6a027fa21323dc271a7267aa350cdbp@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_da6a027fa21323dc271a7267aa350cdbp@chr2:164389604..164389615, +
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_da6a027fa21323dc271a7267aa350cdbp@chr5:135422125..135422141, -
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_da6a027fa21323dc271a7267aa350cdbp3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_da6a027fa21323dc271a7267aa350cdbp@chr11:86461733..86461747, -
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_da6a027fa21323dc271a7267aa350cdbp@chr12:17549752..17549763, +
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_da6a027fa21323dc271a7267aa350cdbp@chr5:91198876..91198885, +
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_da6a027fa21323dc271a7267aa350cdbp@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_da6a027fa21323dc271a7267aa350cdbp@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_da6a027fa21323dc271a7267aa350cdbp@chr11:4165247..4165267, +
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_da6a027fa21323dc271a7267aa350cdbp@chr13:115722413..115722430, +
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_da6a027fa21323dc271a7267aa350cdbp@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_da6a027fa21323dc271a7267aa350cdbp@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_da6a027fa21323dc271a7267aa350cdbp2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_da6a027fa21323dc271a7267aa350cdbp@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_da6a027fa21323dc271a7267aa350cdbp@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_da6a027fa21323dc271a7267aa350cdbp@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_da6a027fa21323dc271a7267aa350cdbp@chr3:89487103..89487111, -
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_da6a027fa21323dc271a7267aa350cdbp@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_da6a027fa21323dc271a7267aa350cdbp@chr17:25885558..25885567, +
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_da6a027fa21323dc271a7267aa350cdbp@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_da6a027fa21323dc271a7267aa350cdbp1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_da6a027fa21323dc271a7267aa350cdbp@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_da6a027fa21323dc271a7267aa350cdbp3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_da6a027fa21323dc271a7267aa350cdbp@chr2:60538178..60538182, -
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_da6a027fa21323dc271a7267aa350cdbp@chr12:17549752..17549763, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_da6a027fa21323dc271a7267aa350cdbp@chr6:147205603..147205610, +
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_da6a027fa21323dc271a7267aa350cdbp@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_da6a027fa21323dc271a7267aa350cdbp@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_da6a027fa21323dc271a7267aa350cdbp1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_da6a027fa21323dc271a7267aa350cdbp@chr16:32641594..32641601, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_da6a027fa21323dc271a7267aa350cdbp@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_da6a027fa21323dc271a7267aa350cdbp@chr9:110941233..110941240, +
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_da6a027fa21323dc271a7267aa350cdbp@chr2:164393992..164394012, -
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_da6a027fa21323dc271a7267aa350cdbp@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_da6a027fa21323dc271a7267aa350cdbp@chr5:135420996..135421000, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_da6a027fa21323dc271a7267aa350cdbp2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_da6a027fa21323dc271a7267aa350cdbp@chr3:89487103..89487111, -
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_da6a027fa21323dc271a7267aa350cdbp@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_da6a027fa21323dc271a7267aa350cdbp@chr6:147205603..147205610, +
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_da6a027fa21323dc271a7267aa350cdbp@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_da6a027fa21323dc271a7267aa350cdbp@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_da6a027fa21323dc271a7267aa350cdbp@chr15:101258041..101258052, +
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_da6a027fa21323dc271a7267aa350cdbp@chr1:108303887..108303893, +
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_da6a027fa21323dc271a7267aa350cdbp@chr11:86461733..86461747, -
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_a772082648fc3ccae618a4ae8872803fp@chr3:121437538..121437546, +
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_a772082648fc3ccae618a4ae8872803fp@chr11:100002128..100002131, +
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_a772082648fc3ccae618a4ae8872803fp@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_a772082648fc3ccae618a4ae8872803fp@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_a772082648fc3ccae618a4ae8872803fp@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_a772082648fc3ccae618a4ae8872803fp3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_a772082648fc3ccae618a4ae8872803fp@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_a772082648fc3ccae618a4ae8872803fp@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_a772082648fc3ccae618a4ae8872803fp@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_a772082648fc3ccae618a4ae8872803fp@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_a772082648fc3ccae618a4ae8872803fp@chr14:31386795..31386797, -
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_a772082648fc3ccae618a4ae8872803fp@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_a772082648fc3ccae618a4ae8872803fp@chr3:121437538..121437546, +
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_a772082648fc3ccae618a4ae8872803fp@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_a772082648fc3ccae618a4ae8872803fp@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_a772082648fc3ccae618a4ae8872803fp@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_a772082648fc3ccae618a4ae8872803fp@chr6:147212620..147212625, +
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_a772082648fc3ccae618a4ae8872803fp@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_a772082648fc3ccae618a4ae8872803fp3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_a772082648fc3ccae618a4ae8872803fp@chr6:147212620..147212625, +
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_a772082648fc3ccae618a4ae8872803fp@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_a772082648fc3ccae618a4ae8872803fp@chr3:121437587..121437593, +
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_a772082648fc3ccae618a4ae8872803fp@chr11:29642912..29642916, -
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_a772082648fc3ccae618a4ae8872803fp@chr14:34905716..34905718, +
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_a772082648fc3ccae618a4ae8872803fp@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_a772082648fc3ccae618a4ae8872803fp@chr11:4164303..4164316, +
6.04e-65FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_f0d2cde98234386fabe8d8eea79ebdc5p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_f0d2cde98234386fabe8d8eea79ebdc5p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_f0d2cde98234386fabe8d8eea79ebdc5p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_f0d2cde98234386fabe8d8eea79ebdc5p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_f0d2cde98234386fabe8d8eea79ebdc5p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_f0d2cde98234386fabe8d8eea79ebdc5p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_f0d2cde98234386fabe8d8eea79ebdc5p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_f0d2cde98234386fabe8d8eea79ebdc5p@chr15:38385124..38385138, +
4.76e-57FFCP PHASE2:Hg19::chr5:180017253..180017257,-#_f8c9d066b675c4cd6c4685fcc99fa894p@chr5:180017253..180017257, -
4.76e-57FFCP PHASE1:Hg19::chr5:180017253..180017257,-#_f8c9d066b675c4cd6c4685fcc99fa894p@chr5:180017253..180017257, -
4.9e-53FFCP PHASE1:Mm9::chrX:163645025..163645028,+#_bfe90d3741f734884aa04d767b029116p@chrX:163645025..163645028, +
4.9e-53FFCP PHASE2:Mm9::chr1:152012112..152012121,-#_bfe90d3741f734884aa04d767b029116p6@ENSMUST00000163840
4.9e-53FFCP PHASE1:Mm9::chr11:96608968..96608974,-#_bfe90d3741f734884aa04d767b029116p2@ENSMUST00000166907
4.9e-53FFCP PHASE2:Mm9::chr6:147212455..147212462,-#_bfe90d3741f734884aa04d767b029116p6@Pthlh
4.9e-53FFCP PHASE2:Mm9::chr11:96608968..96608974,-#_bfe90d3741f734884aa04d767b029116p2@ENSMUST00000166907
4.9e-53FFCP PHASE1:Mm9::chr6:147212455..147212462,-#_bfe90d3741f734884aa04d767b029116p6@Pthlh