Personal tools

UBERON:0001021: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=nerve
|name=nerve
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000010
|part_of=UBERON:0000010

Latest revision as of 17:14, 12 September 2014

Name:nerve
Namespace:FANTOM
Definition:"an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nervous_system, ZFA:0007009, ZFIN:curator]
Xrefs:
links:

AAO:0011070
AEO:0000137
BTO:0000925
EHDAA2:0003137
EHDAA:2851
EHDAA:3776
EHDAA:4657
EV:0100162
FBbt:00005105
FMA:65132
GAID:758
galen:Nerve
MA:0000217
ncithesaurus:Nerve
OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA
SCTID:256864008
TAO:0007009
XAO:0003047

ZFA:0007009
Synonyms: "neural subtree" RELATED [FMA:65132]
Comments:check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment
Alt_id: UBERON:FBbt_00005099-FMA_5914
UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000122(neuron projection bundle)
part_of:UBERON:0000010(peripheral nervous system)



Children

is a:UBERON:0001785 (cranial nerve),UBERON:0002003 (peripheral nerve),UBERON:0004904 (nerve connecting eye with brain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001021 (nerve), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d0b545b5131017920ff8b5c7c4fff5e4p@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d0b545b5131017920ff8b5c7c4fff5e4p@chr12:57628762..57628773, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:25161980..25161984, -
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE2:Hg19::chr5:126962527..126962529,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chr13:64423563..64423566,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_5f828c8a1ebb642a109db98d40eb5b79p7@TMEM88B
2.55e-98FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_5f828c8a1ebb642a109db98d40eb5b79p59@ANK3
2.55e-98FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_5f828c8a1ebb642a109db98d40eb5b79p7@TMEM88B
2.55e-98FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr10:22768515..22768517, +
2.55e-98FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_5f828c8a1ebb642a109db98d40eb5b79p1@ENST00000510391
2.55e-98FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:66713214..66713221, +
2.55e-98FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_5f828c8a1ebb642a109db98d40eb5b79p1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr17:12935401..12935405, -
2.55e-98FFCP PHASE2:Hg19::chr12:127992016..127992052,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:127992016..127992052, +
2.55e-98FFCP PHASE2:Hg19::chr10:118927879..118927891,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr10:118927879..118927891, +
2.55e-98FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:39827273..39827281, +
2.55e-98FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE2:Hg19::chr17:12935401..12935405,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr17:12935401..12935405, -
2.55e-98FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:30166055..30166059, -
2.55e-98FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE2:Hg19::chr8:130597061..130597068,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:130597061..130597068, +
2.55e-98FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr21:22483836..22483880, +
2.55e-98FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_5f828c8a1ebb642a109db98d40eb5b79p3@ENST00000558781
2.55e-98FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr21:22483836..22483880, +
2.55e-98FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:27750995..27750997, -
2.55e-98FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE1:Hg19::chr12:296753..296755,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:296753..296755, -
2.55e-98FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_5f828c8a1ebb642a109db98d40eb5b79p22@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE1:Hg19::chrX:131884370..131884375,-#_5f828c8a1ebb642a109db98d40eb5b79p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr10:37679189..37679193, +
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_5f828c8a1ebb642a109db98d40eb5b79p3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_5f828c8a1ebb642a109db98d40eb5b79p10@ALK
2.55e-98FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_5f828c8a1ebb642a109db98d40eb5b79p10@ALK
2.55e-98FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_5f828c8a1ebb642a109db98d40eb5b79p2@ATAD3B
2.55e-98FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr6:121951983..121951986,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr6:121951983..121951986, +
2.55e-98FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:133035182..133035195, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "A portion of tissue which is a fasiculated group of axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001021&oldid=3277181"