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Difference between revisions of "UBERON:0001062"

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{{UBERON
 
{{UBERON
|id=UBERON:0001062
+
|alt_id=UBERON:FBbt_root_00000000-FMA_62955
|name=anatomical entity
 
|namespace=
 
|def="Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955]
 
|xref=AAO:0010841;;AEO:0000000;;BILA:0000000;;CARO:0000000;;EHDAA2:0002229;;FBbt_root:00000000;;FMA:62955;;HAO:0000000;;MA:0000001;;NIF_GrossAnatomy:birnlex_6;;TAO:0100000;;TGMA:0001822;;ZFA:0100000
 
|is_a=
 
|synonym=
 
 
|comment=
 
|comment=
|alt_id=UBERON:FBbt_root_00000000-FMA_62955
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955]
|subset=upper_level
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0001062
 +
|is_a=
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=anatomical entity
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Temporary placeholder for unclassified terms.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: subclass amphibian anatomical entity (AAO:0010001)[AAO]" xsd:string
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Temporary placeholder for unclassified terms.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: subclass amphibian anatomical entity (AAO:0010001)[AAO]" xsd:string
|is_obsolete=
+
|subset=upper_level
|preceded_by=
+
|synonym=
 +
|union_of=
 +
|xref=AAO:0010841;;AEO:0000000;;BILA:0000000;;CARO:0000000;;EHDAA2:0002229;;FBbt_root:00000000;;FMA:62955;;HAO:0000000;;MA:0000001;;NIF_GrossAnatomy:birnlex_6;;TAO:0100000;;TGMA:0001822;;ZFA:0100000
 
}}
 
}}

Latest revision as of 08:15, 12 September 2014

Name:anatomical entity
Namespace:FANTOM
Definition:"Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955]
Xrefs:
links:

AAO:0010841
AEO:0000000
BILA:0000000
CARO:0000000
EHDAA2:0002229
FBbt_root:00000000
FMA:62955
HAO:0000000
MA:0000001
NIF_GrossAnatomy:birnlex_6
TAO:0100000
TGMA:0001822

ZFA:0100000
Alt_id: UBERON:FBbt_root_00000000-FMA_62955
Subset: upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents NA

Children

is a:UBERON:0000465 (material anatomical entity),UBERON:0000466 (immaterial anatomical entity),UBERON:0004458 (body cavity or lining)
disjoint from:UBERON:0000000 (processual entity)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)

... further results Mouse (Mus musculus)

  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001062 (anatomical entity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Temporary placeholder for unclassified terms.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: subclass amphibian anatomical entity (AAO:0010001)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.