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UBERON:0001062

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Name:anatomical entity
Definition:"Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955]
Xrefs:
links:

AAO:0010841
AEO:0000000
BILA:0000000
CARO:0000000
EHDAA2:0002229
FBbt_root:00000000
FMA:62955
HAO:0000000
MA:0000001
NIF_GrossAnatomy:birnlex_6
TAO:0100000
TGMA:0001822

ZFA:0100000
Alt_id: UBERON:FBbt_root_00000000-FMA_62955
Subset: upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents NA

Children

is a:UBERON:0000465 (material anatomical entity),UBERON:0000466 (immaterial anatomical entity),UBERON:0004458 (body cavity or lining)
disjoint from:UBERON:0000000 (processual entity)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)

... further results Mouse (Mus musculus)

  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001062 (anatomical entity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Temporary placeholder for unclassified terms.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: subclass amphibian anatomical entity (AAO:0010001)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.