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UBERON:0001359

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Name:cerebrospinal fluid
Namespace:FANTOM
Definition:"a clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord." [Wikipedia:Cerebrospinal_fluid]
Xrefs:
links:

BTO:0000237
EFO:0000329
ENVO:02000029
EV:0100311
FMA:20935
GAID:1181
MA:0002503
MAT:0000499
MESH:A.12.207.268
ncithesaurus:Cerebrospinal_Fluid
NIF_GrossAnatomy:birnlex_1798
TAO:0002184
VHOG:0001278

ZFA:0001626
Synonyms: "cerebral spinal fluid" EXACT [ZFA:0001626]
"CSF" EXACT []
"liquor cerebrospinalis" RELATED [Wikipedia:Cerebrospinal_fluid]
"spinal fluid" RELATED [BTO:0000237]
Comments:AO notes: the FMA def states that this is subarachnoid spaces only. ZFA def states subarachnoid spaces and brain ventricles, but not SC (and has part_of to brain). Circulation: It circulates from the lateral ventricles to the foramen of Monro (Interventricular foramen), third ventricle, aqueduct of Sylvius (Cerebral aqueduct), fourth ventricle, foramen of Magendie (Median aperture) and foramina of Luschka (Lateral apertures), subarachnoid space over brain and spinal cord. It should be noted that the CSF moves in a pulsatile manner throughout the CSF system with nearly zero net flow. CSF is reabsorbed into venous sinus blood via arachnoid granulations.
Alt_id: UBERON:FMA_20935-MA_0002503
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0007779(transduate)
develops_from:UBERON:0002307(choroid plexus of lateral ventricle)



Children

derives from:FF:0011151 (human cerebrospinal fluid sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001359 (cerebrospinal fluid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.