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Difference between revisions of "UBERON:0001890"

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|located_in=
 
|located_in=
 
|name=forebrain
 
|name=forebrain
|namespace=
+
|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=UBERON:0000955
 
|part_of=UBERON:0000955

Latest revision as of 08:22, 12 September 2014

Name:forebrain
Namespace:FANTOM
Definition:"The most anterior region the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576]
Xrefs:
links:

AAO:0010147
BTO:0000478
EFO:0000909
EHDAA2:0000556
EHDAA:3470
EMAPA:16895
FMA:61992
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000170
MAT:0000105
MESH:A.08.186.211.730
MIAA:0000105
ncithesaurus:Fore-Brain
ncithesaurus:Prosencephalon
NIF_GrossAnatomy:birnlex_1509
SCTID:362291003
TAO:0000109
VHOG:0000383
XAO:0000011

ZFA:0000109
Synonyms: "prosencephalon" RELATED []
Alt_id: UBERON:FMA_61992-MA_0000170-MIAA_0000105-XAO_0000011-ZFA_0000109
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002616(regional part of brain)
develops_from:UBERON:0003080(anterior neural tube)
part_of:UBERON:0000955(brain)



Children

part of:UBERON:0000349 (limbic system),UBERON:0001893 (telencephalon),UBERON:0001894 (diencephalon),UBERON:0002743 (basal forebrain),UBERON:0002780 (regional part of forebrain),CL:0012000 (astrocyte of the forebrain),CL:0012001 (neuron of the forebrain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001890 (forebrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
6.11e-141FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_94cd2af3fd8ff13070818ea469ec6d6fp@chr5:89977201..89977236, +
6.11e-141FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_94cd2af3fd8ff13070818ea469ec6d6fp@chr5:89977201..89977236, +
2.38e-133FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_5179aa79c58bb22cf09b237550ddeb84p5@ST8SIA3
2.38e-133FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_5179aa79c58bb22cf09b237550ddeb84p5@ST8SIA3
6.8e-130FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_4543763bc1f50216d743b17a1a5467ebp5@PHACTR1
6.8e-130FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_4543763bc1f50216d743b17a1a5467ebp5@PHACTR1
2.27e-128FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_f1d7b0f716b259f23c854703f5c1749dp3@PHACTR1
2.27e-128FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_f1d7b0f716b259f23c854703f5c1749dp3@PHACTR1
6.39e-128FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_126d169843e22e2b0ffdb27d4a503619p6@PSD
6.39e-128FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_126d169843e22e2b0ffdb27d4a503619p6@PSD
7.77e-125FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_8a1f58d59e3ee0f642acb97c6d76a22dp@chr20:61806320..61806344, +
7.77e-125FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_8a1f58d59e3ee0f642acb97c6d76a22dp@chr20:61806320..61806344, +
3.82e-123FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_a06d906e2df5184083362ed310a554b7p2@FXYD7
3.82e-123FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_a06d906e2df5184083362ed310a554b7p2@FXYD7
1.09e-121FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_f5a877c65af8112c29624310cdce1247p1@NR2E1
1.09e-121FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_f5a877c65af8112c29624310cdce1247p1@NR2E1
2.87e-118FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_b2d8ab7d57eb2467d591f172d3db2854p5@OPCML
2.87e-118FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_b2d8ab7d57eb2467d591f172d3db2854p5@OPCML
7.25e-118FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_c899bb3ccc00de687e8e0128314cac95p4@DPP6
7.25e-118FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_c899bb3ccc00de687e8e0128314cac95p4@DPP6
8.87e-118FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_e3e01c6143bf3662e17f99be47dffcadp9@GPM6B
8.87e-118FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_e3e01c6143bf3662e17f99be47dffcadp9@GPM6B
1.66e-117FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_c9c936c6544958c3e44c1f974d3a4ae0p@chr4:6514469..6514483, -
1.66e-117FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_c9c936c6544958c3e44c1f974d3a4ae0p@chr4:6514469..6514483, -
2.75e-117FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_17d4fdd5db55b09b88d7912784db153ap3@GRIN2B
2.75e-117FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_17d4fdd5db55b09b88d7912784db153ap3@GRIN2B
2.82e-116FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_108ee19174f3164e68b547a19c2ff1dfp4@PHACTR1
2.82e-116FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_108ee19174f3164e68b547a19c2ff1dfp4@PHACTR1
2.93e-116FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_9c8cd4f547f775eb9a54a14b41d85764p8@RIMS2
2.93e-116FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_9c8cd4f547f775eb9a54a14b41d85764p8@RIMS2
5.58e-116FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_b31b9625b83bcbb6468d3e57562352cap8@LRRC7
5.58e-116FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_b31b9625b83bcbb6468d3e57562352cap8@LRRC7
6.52e-116FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_ced2266ed38ac546f0dec71ca7d2afcbp4@DLGAP3
6.52e-116FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_ced2266ed38ac546f0dec71ca7d2afcbp4@DLGAP3
6.61e-116FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_fa9942a876f8e490311ef5f5d39c56f0p8@PHACTR1
6.61e-116FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_fa9942a876f8e490311ef5f5d39c56f0p8@PHACTR1
5.28e-115FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_7a446cb699bf77de2f5d4d25126f9424p3@DOCK4
5.28e-115FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_7a446cb699bf77de2f5d4d25126f9424p3@DOCK4
5.97e-115FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_0baaf265f75f8e1c98a0c25ad92be58ep3@GPR98
5.97e-115FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_0baaf265f75f8e1c98a0c25ad92be58ep3@GPR98
1.02e-114FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_4acb237037472e4b2b6136ca21c6343ap2@DLGAP3
1.02e-114FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_4acb237037472e4b2b6136ca21c6343ap2@DLGAP3
1.06e-114FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_20e69dd2bfc329bff1a4076c5d68ccccp5@MKL2
1.06e-114FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_20e69dd2bfc329bff1a4076c5d68ccccp5@MKL2
8.42e-114FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_56a4aa966986522fdab1987de040c0dcp1@uc003ppd.1
8.42e-114FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_56a4aa966986522fdab1987de040c0dcp1@uc003ppd.1
3.53e-113FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_5680f39f2b76d0d03f515ae073dd9ef0p@chr1:70035018..70035044, +
3.53e-113FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_5680f39f2b76d0d03f515ae073dd9ef0p@chr1:70035018..70035044, +
5.22e-113FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_e2ccbe849602839002dcf31307da66e3p6@GABRA2
5.22e-113FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_e2ccbe849602839002dcf31307da66e3p6@GABRA2
5.23e-113FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_75c515cc2d90e7cd15c05316145389e8p6@CIT
5.23e-113FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_75c515cc2d90e7cd15c05316145389e8p6@CIT
1.08e-112FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_ff8f0888f30f5c1bce442c8bd42fcdd3p2@LMTK3
1.08e-112FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_ff8f0888f30f5c1bce442c8bd42fcdd3p2@LMTK3
1.26e-112FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_1d320c017f26f0b9021cabb7956894c7p10@GPM6B
1.26e-112FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_1d320c017f26f0b9021cabb7956894c7p10@GPM6B
1.39e-112FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_a12b9152f9acabcb2361914bf5c2a9aap@chr5:80255907..80255942, +
1.39e-112FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_a12b9152f9acabcb2361914bf5c2a9aap@chr5:80255907..80255942, +
1.42e-112FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_a2eee95743da5fc9441d554c87295542p@chr17:61194578..61194599, +
1.42e-112FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_a2eee95743da5fc9441d554c87295542p@chr17:61194578..61194599, +
1.66e-112FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_1b7b461f360e8fbd581304617f1626e8p@chr5:89977181..89977199, +
1.66e-112FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_1b7b461f360e8fbd581304617f1626e8p@chr5:89977181..89977199, +
6.89e-112FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_053028ba11e81f2bf62e41e830dec087p1@ENST00000417881
6.89e-112FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_053028ba11e81f2bf62e41e830dec087p1@ENST00000417881
7.85e-112FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_42cdff334b3b0591d0ee33c5bf787cb5p6@DPP6
7.85e-112FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_42cdff334b3b0591d0ee33c5bf787cb5p6@DPP6
1.02e-111FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_4634d65504b62a95ff9e43e8e4d9fa28p2@CDH9
1.02e-111FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_4634d65504b62a95ff9e43e8e4d9fa28p2@CDH9
1.42e-111FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_d66ba86d8b01aaa7090ae9bc151ebdc4p@chr2:3134361..3134374, -
1.42e-111FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_d66ba86d8b01aaa7090ae9bc151ebdc4p@chr2:3134361..3134374, -
1.94e-111FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_366de2ebf1779ee817f258896664cb30p3@TIAM2
1.94e-111FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_366de2ebf1779ee817f258896664cb30p3@TIAM2
3.18e-111FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_756ce8f16ed31abbb4008f5376b8474cp1@KALRN
3.18e-111FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_756ce8f16ed31abbb4008f5376b8474cp1@KALRN
4.18e-111FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_1880b318aaec5246890595f3aba3dacap4@ASTN1
4.18e-111FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_1880b318aaec5246890595f3aba3dacap4@ASTN1
5.69e-111FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_43507fb9fd41a656ceb98067e309685ap@chr11:132982177..132982181, -
5.69e-111FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_43507fb9fd41a656ceb98067e309685ap@chr11:132982177..132982181, -
7.54e-111FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_c507736394ce9a811d3275aae70297b3p5@NKAIN3
7.54e-111FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_c507736394ce9a811d3275aae70297b3p5@NKAIN3
1.27e-110FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_91c7bf141eaeef6badb0de1bab0c0061p9@ANKS1B
1.27e-110FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_91c7bf141eaeef6badb0de1bab0c0061p9@ANKS1B
1.38e-110FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_8adfb93598208a709fe9569bbe832849p3@ARNT2
1.38e-110FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_8adfb93598208a709fe9569bbe832849p3@ARNT2
2.12e-110FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_7fa1b54933033dbe7535ad27d4a42130p@chr20:1791316..1791339, -
2.12e-110FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_7fa1b54933033dbe7535ad27d4a42130p@chr20:1791316..1791339, -
2.27e-110FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_a07095518d3e2d5fc2f459c7abff4bbdp14@PALM2-AKAP2
2.27e-110FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_a07095518d3e2d5fc2f459c7abff4bbdp14@PALM2-AKAP2
3.45e-110FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_4b201cb5dcee30786f9749ee7860da76p6@GPM6B
3.45e-110FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_4b201cb5dcee30786f9749ee7860da76p6@GPM6B
4.23e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_8428790c292dc7dc894035ccaea79d11p1@ENST00000412957
4.23e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_8428790c292dc7dc894035ccaea79d11p1@ENST00000412957
5.12e-110FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_426cb6c23d50ac983c41943e9051080ap7@ANKS1B
5.12e-110FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_426cb6c23d50ac983c41943e9051080ap7@ANKS1B
7.19e-110FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_1887cfc1535600c68e705bfa82937df1p@chr20:1791288..1791304, -
7.19e-110FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_1887cfc1535600c68e705bfa82937df1p@chr20:1791288..1791304, -
9.49e-110FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_43a3c02d5372ddb5352ba1ad52fa26b2p@chr21:43917145..43917190, -
9.49e-110FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_43a3c02d5372ddb5352ba1ad52fa26b2p@chr21:43917145..43917190, -
1.01e-109FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_38f79f7871dbed7edd1cd3dd2edea05cp2@TIAM2
1.01e-109FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_38f79f7871dbed7edd1cd3dd2edea05cp2@TIAM2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Most anterior of the three regions of the brain consisting of the telencephalon and diencephalon.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from forebrain neural tube (TAO:0007041)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.