Personal tools

UBERON:0002067

From FANTOM5_SSTAR

Revision as of 08:14, 15 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:dermis
Definition:"The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]." [Wikipedia:Dermis, ZFIN:curator]
Xrefs:
links:

AAO:0000128
BTO:0000294
EFO:0000953
EV:0100154
FMA:70323
GAID:1321
MA:0000152
MAT:0000153
MESH:A.17.815.180
MIAA:0000153
ncithesaurus:Dermis
SCTID:361696001
TAO:0001119
VHOG:0000108
XAO:0000217

ZFA:0001119
Synonyms: "corium" RELATED [BTO:0000294]
"cutis" RELATED [BTO:0000294]
"vertebrate dermis" EXACT []
Comments:Editor notes: Consider adding a layer-of-skin grouping class for all skin layers
Alt_id: UBERON:FMA_70323-MA_0000152-MIAA_0000153-XAO_0000217-ZFA_0001119
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004923(organ component layer)
develops_from:UBERON:0003077(paraxial mesoderm),UBERON:0003104(mesenchyme),UBERON:0004016(dermatome),UBERON:0010083(future dermis)
part_of:UBERON:0002097(skin of body),UBERON:0002199(integument)



Children

develops from:UBERON:0004756 (dermal skeletal element)
part of:UBERON:0001992 (papillary layer of dermis),CL:0002551 (fibroblast of dermis)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002067 (dermis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.31e-68FFCP PHASE1:Hg19::chr1:45087872..45087892,+#_73a5fe415b7ca65484bdfc742826348dp@chr1:45087872..45087892, +
1.31e-68FFCP PHASE2:Hg19::chr1:45087872..45087892,+#_73a5fe415b7ca65484bdfc742826348dp@chr1:45087872..45087892, +
9.25e-50FFCP PHASE2:Hg19::chr7:107707083..107707099,-#_83d7fbf3a7befa7de290a45886be4910p@chr7:107707083..107707099, -
9.25e-50FFCP PHASE1:Hg19::chr7:107707064..107707079,-#_83d7fbf3a7befa7de290a45886be4910p@chr7:107707064..107707079, -
9.25e-50FFCP PHASE1:Hg19::chr7:107707083..107707099,-#_83d7fbf3a7befa7de290a45886be4910p@chr7:107707083..107707099, -
9.25e-50FFCP PHASE2:Hg19::chr7:107707064..107707079,-#_83d7fbf3a7befa7de290a45886be4910p@chr7:107707064..107707079, -
9.89e-40FFCP PHASE1:Hg19::chr10:124254447..124254458,-#_70b5dd352ade128910bdd82040833306p@chr10:124254447..124254458, -
9.89e-40FFCP PHASE2:Hg19::chr10:124254447..124254458,-#_70b5dd352ade128910bdd82040833306p@chr10:124254447..124254458, -
1.21e-39FFCP PHASE2:Hg19::chr1:10228206..10228218,+#_474993e40a080f515fefa529e8cce632p@chr1:10228206..10228218, +
1.21e-39FFCP PHASE1:Hg19::chr1:10228206..10228218,+#_474993e40a080f515fefa529e8cce632p@chr1:10228206..10228218, +
5.08e-38FFCP PHASE1:Hg19::chr6:5498703..5498727,+#_3f9a54ca105947556fa5031d3b942884p@chr6:5498703..5498727, +
5.08e-38FFCP PHASE2:Hg19::chr6:5498703..5498727,+#_3f9a54ca105947556fa5031d3b942884p@chr6:5498703..5498727, +
2.83e-35FFCP PHASE1:Hg19::chr8:128387795..128387801,+#_86141da7369306346e1d7fcfad6e08f6p@chr8:128387795..128387801, +
2.83e-35FFCP PHASE2:Hg19::chr8:128387795..128387801,+#_86141da7369306346e1d7fcfad6e08f6p@chr8:128387795..128387801, +
1.55e-33FFCP PHASE2:Hg19::chr1:45088343..45088354,+#_7bd56040ab10bf8a0e52e3ed8f20d8cap@chr1:45088343..45088354, +
1.55e-33FFCP PHASE1:Hg19::chr1:45088343..45088354,+#_7bd56040ab10bf8a0e52e3ed8f20d8cap@chr1:45088343..45088354, +
5.64e-29FFCP PHASE1:Hg19::chr7:98258032..98258045,+#_610f64bf5c24b08515d2c07ef60c9fe5p@chr7:98258032..98258045, +
5.64e-29FFCP PHASE2:Hg19::chr7:98258032..98258045,+#_610f64bf5c24b08515d2c07ef60c9fe5p@chr7:98258032..98258045, +
7.57e-28FFCP PHASE1:Hg19::chr10:31071229..31071236,+#_046bda63a381043f46a7064c56d8bb9bp@chr10:31071229..31071236, +
7.57e-28FFCP PHASE2:Hg19::chr10:31071229..31071236,+#_046bda63a381043f46a7064c56d8bb9bp@chr10:31071229..31071236, +
1.12e-26FFCP PHASE1:Hg19::chr5:33794920..33794939,-#_9a62e126fea2d1795cb0c0c25f092ca9p@chr5:33794920..33794939, -
1.12e-26FFCP PHASE2:Hg19::chr5:33794920..33794939,-#_9a62e126fea2d1795cb0c0c25f092ca9p@chr5:33794920..33794939, -
1.47e-26FFCP PHASE1:Hg19::chr21:47405899..47405911,+#_497ee5b4c828ab5bbf65f00766dc5c2ep@chr21:47405899..47405911, +
1.47e-26FFCP PHASE2:Hg19::chr21:47405899..47405911,+#_497ee5b4c828ab5bbf65f00766dc5c2ep@chr21:47405899..47405911, +
1.5e-25FFCP PHASE1:Hg19::chr17:38174999..38175001,+#_ff89e28a3d6aea3b34c0121975f4f106p8@CASC3
1.5e-25FFCP PHASE1:Hg19::chr4:89454373..89454379,-#_ff89e28a3d6aea3b34c0121975f4f106p@chr4:89454373..89454379, -
1.5e-25FFCP PHASE2:Hg19::chr4:89454373..89454379,-#_ff89e28a3d6aea3b34c0121975f4f106p@chr4:89454373..89454379, -
1.5e-25FFCP PHASE2:Hg19::chr17:38174999..38175001,+#_ff89e28a3d6aea3b34c0121975f4f106p8@CASC3
2.99e-25FFCP PHASE1:Hg19::chr8:141656896..141656918,-#_8aaa078761cdfb0bca575125dab819fcp@chr8:141656896..141656918, -
2.99e-25FFCP PHASE2:Hg19::chr8:141656896..141656918,-#_8aaa078761cdfb0bca575125dab819fcp@chr8:141656896..141656918, -
3.17e-25FFCP PHASE2:Hg19::chr2:95983133..95983144,+#_734ddac16dfeb01d14d15eef209df0c1p@chr2:95983133..95983144, +
3.17e-25FFCP PHASE1:Hg19::chr2:95983133..95983144,+#_734ddac16dfeb01d14d15eef209df0c1p@chr2:95983133..95983144, +
2.03e-24FFCP PHASE1:Hg19::chr5:33794876..33794902,-#_a3e8e64e44620fb712c82f98eb4fbb82p@chr5:33794876..33794902, -
2.03e-24FFCP PHASE2:Hg19::chr5:33794876..33794902,-#_a3e8e64e44620fb712c82f98eb4fbb82p@chr5:33794876..33794902, -
2.4e-24FFCP PHASE2:Hg19::chr5:174252830..174252847,+#_3961e80021c6c4ac3b3475561ae8c38fp@chr5:174252830..174252847, +
2.4e-24FFCP PHASE1:Hg19::chr5:174252830..174252847,+#_3961e80021c6c4ac3b3475561ae8c38fp@chr5:174252830..174252847, +
2.92e-24FFCP PHASE1:Hg19::chr4:127699583..127699608,-#_b1213e2ceb0b12210879ddf8bef5caebp@chr4:127699583..127699608, -
2.92e-24FFCP PHASE2:Hg19::chr4:127699583..127699608,-#_b1213e2ceb0b12210879ddf8bef5caebp@chr4:127699583..127699608, -
1.68e-23FFCP PHASE1:Hg19::chr4:127876558..127876592,-#_bc534413383b7379f99a99a8fb3c328cp1@ENST00000515428
1.68e-23FFCP PHASE2:Hg19::chr4:127876558..127876592,-#_bc534413383b7379f99a99a8fb3c328cp1@ENST00000515428
2.62e-23FFCP PHASE1:Hg19::chr7:127963997..127964004,-#_99be5715d44e1f0d829194fbc837a0bap@chr7:127963997..127964004, -
2.62e-23FFCP PHASE2:Hg19::chr7:127963997..127964004,-#_99be5715d44e1f0d829194fbc837a0bap@chr7:127963997..127964004, -
3.32e-23FFCP PHASE2:Hg19::chr17:813116..813132,+#_9c331ac2c2def4dfc4c6cd03e66e2d49p@chr17:813116..813132, +
3.32e-23FFCP PHASE1:Hg19::chr17:813116..813132,+#_9c331ac2c2def4dfc4c6cd03e66e2d49p@chr17:813116..813132, +
6.41e-23FFCP PHASE2:Hg19::chr16:85617034..85617043,-#_bcb629a8b3ff824d199c6666b8dd49b2p@chr16:85617034..85617043, -
6.41e-23FFCP PHASE1:Hg19::chr16:85617034..85617043,-#_bcb629a8b3ff824d199c6666b8dd49b2p@chr16:85617034..85617043, -
7.17e-23FFCP PHASE1:Hg19::chr5:174252850..174252859,+#_e619161e9360c085006bd0eeb42eb676p@chr5:174252850..174252859, +
7.17e-23FFCP PHASE2:Hg19::chr5:174252850..174252859,+#_e619161e9360c085006bd0eeb42eb676p@chr5:174252850..174252859, +
7.17e-23FFCP PHASE1:Hg19::chr5:177652352..177652356,-#_e619161e9360c085006bd0eeb42eb676p6@AGXT2L2
7.17e-23FFCP PHASE2:Hg19::chr5:177652352..177652356,-#_e619161e9360c085006bd0eeb42eb676p6@AGXT2L2
4.19e-22FFCP PHASE1:Hg19::chr5:33794904..33794916,-#_ed598c139a2131b8b73c398609bec48dp@chr5:33794904..33794916, -
4.19e-22FFCP PHASE2:Hg19::chr5:33794904..33794916,-#_ed598c139a2131b8b73c398609bec48dp@chr5:33794904..33794916, -
3.14e-21FFCP PHASE2:Hg19::chr11:122051600..122051617,+#_6f54d0e495c3bbd898fc5fd9f46b4d80p@chr11:122051600..122051617, +
3.14e-21FFCP PHASE1:Hg19::chr11:122051600..122051617,+#_6f54d0e495c3bbd898fc5fd9f46b4d80p@chr11:122051600..122051617, +
7.71e-21FFCP PHASE1:Hg19::chr21:36208749..36208768,+#_9d79ad6f447872beae5f10b3e1476678p@chr21:36208749..36208768, +
7.71e-21FFCP PHASE2:Hg19::chr21:36208749..36208768,+#_9d79ad6f447872beae5f10b3e1476678p@chr21:36208749..36208768, +
8.88e-21FFCP PHASE2:Hg19::chr20:940152..940156,-#_7506eb14b15990149eb496937df87027p@chr20:940152..940156, -
8.88e-21FFCP PHASE1:Hg19::chr20:940152..940156,-#_7506eb14b15990149eb496937df87027p@chr20:940152..940156, -
9.8e-21FFCP PHASE1:Hg19::chr18:52969844..52969895,-#_143c9f5631ccfa4b71c160c60c8c347ap27@TCF4
9.8e-21FFCP PHASE2:Hg19::chr18:52969844..52969895,-#_143c9f5631ccfa4b71c160c60c8c347ap27@TCF4
1.24e-20FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_5a2d99923a3746795931e29a05da8b64p@chr1:45087902..45087912, +
1.24e-20FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_5a2d99923a3746795931e29a05da8b64p@chr1:45087902..45087912, +
1.29e-20FFCP PHASE1:Hg19::chr12:66036219..66036262,-#_42d2c65fd910d903d7eecfdfb1d6f5c2p1@ENST00000544557
1.29e-20FFCP PHASE2:Hg19::chr12:66036219..66036262,-#_42d2c65fd910d903d7eecfdfb1d6f5c2p1@ENST00000544557
1.32e-20FFCP PHASE1:Hg19::chr7:152549181..152549213,+#_c9d0ab832f95fcd100382eb68c9b3f3fp@chr7:152549181..152549213, +
1.32e-20FFCP PHASE2:Hg19::chr7:152549181..152549213,+#_c9d0ab832f95fcd100382eb68c9b3f3fp@chr7:152549181..152549213, +
1.73e-20FFCP PHASE2:Hg19::chr1:119530682..119530692,-#_c5ba0e7673122a5781d0b306c4b1a29cp10@TBX15
1.73e-20FFCP PHASE1:Hg19::chr1:119530682..119530692,-#_c5ba0e7673122a5781d0b306c4b1a29cp10@TBX15
2.11e-20FFCP PHASE2:Hg19::chr17:73682761..73682766,+#_76845917640f73793a5284815887a905p@chr17:73682761..73682766, +
2.11e-20FFCP PHASE1:Hg19::chr17:73682761..73682766,+#_76845917640f73793a5284815887a905p@chr17:73682761..73682766, +
4.35e-19FFCP PHASE1:Hg19::chr14:38371323..38371347,-#_c28d560026fc89e3a7f451ebbc0a1ca6p1@ENST00000554257, p1@uc001wuk.1
4.35e-19FFCP PHASE2:Hg19::chr14:38371323..38371347,-#_c28d560026fc89e3a7f451ebbc0a1ca6p1@ENST00000554257, p1@uc001wuk.1
4.67e-19FFCP PHASE2:Hg19::chr21:47404148..47404163,+#_067d3581df4479a43f054699b98c6079p@chr21:47404148..47404163, +
4.67e-19FFCP PHASE1:Hg19::chr21:47404148..47404163,+#_067d3581df4479a43f054699b98c6079p@chr21:47404148..47404163, +
5.29e-19FFCP PHASE2:Hg19::chr4:5754385..5754405,+#_28b5033bd52d339a14409772175ff83ap3@EVC
5.29e-19FFCP PHASE1:Hg19::chr4:5754385..5754405,+#_28b5033bd52d339a14409772175ff83ap3@EVC
1.22e-18FFCP PHASE2:Hg19::chr2:177022022..177022060,+#_06fc5fd1fc973e779bd0bccfa3523cf6p@chr2:177022022..177022060, +
1.22e-18FFCP PHASE1:Hg19::chr2:177022022..177022060,+#_06fc5fd1fc973e779bd0bccfa3523cf6p@chr2:177022022..177022060, +
1.35e-18FFCP PHASE2:Hg19::chr12:2163623..2163634,+#_02b5c23bbd882832a4773914bb5deb2ep@chr12:2163623..2163634, +
1.35e-18FFCP PHASE2:Hg19::chr12:5198401..5198415,+#_02b5c23bbd882832a4773914bb5deb2ep@chr12:5198401..5198415, +
1.35e-18FFCP PHASE1:Hg19::chr12:5198401..5198415,+#_02b5c23bbd882832a4773914bb5deb2ep@chr12:5198401..5198415, +
1.35e-18FFCP PHASE1:Hg19::chr12:2163623..2163634,+#_02b5c23bbd882832a4773914bb5deb2ep@chr12:2163623..2163634, +
1.51e-17FFCP PHASE2:Hg19::chr2:201474023..201474035,+#_21c1055b7d754aeb90af6a110e2dcfb0p5@AOX1
1.51e-17FFCP PHASE1:Hg19::chr2:201474023..201474035,+#_21c1055b7d754aeb90af6a110e2dcfb0p5@AOX1
3.53e-17FFCP PHASE2:Hg19::chr12:66036083..66036098,-#_3bfc1a4bf3509f0c05cc4d3fb614314cp3@ENST00000539653
3.53e-17FFCP PHASE1:Hg19::chr12:66036083..66036098,-#_3bfc1a4bf3509f0c05cc4d3fb614314cp3@ENST00000539653
4.17e-17FFCP PHASE2:Hg19::chrX:118362928..118362933,+#_c9daf3dffe3124a44434e27e33199ef8p@chrX:118362928..118362933, +
4.17e-17FFCP PHASE1:Hg19::chrX:118362928..118362933,+#_c9daf3dffe3124a44434e27e33199ef8p@chrX:118362928..118362933, +
4.92e-17FFCP PHASE1:Hg19::chr4:81159520..81159523,+#_02b625b5f69b0559649f7fc0c2df37c4p@chr4:81159520..81159523, +
4.92e-17FFCP PHASE2:Hg19::chr4:81159520..81159523,+#_02b625b5f69b0559649f7fc0c2df37c4p@chr4:81159520..81159523, +
7.89e-17FFCP PHASE1:Hg19::chr2:177502906..177502920,-#_d3c4197e4f45cbb8c05259525af8057bp2@ENST00000295549, p2@uc002ukz.1
7.89e-17FFCP PHASE2:Hg19::chr2:177502906..177502920,-#_d3c4197e4f45cbb8c05259525af8057bp2@ENST00000295549, p2@uc002ukz.1
8.61e-17FFCP PHASE1:Hg19::chr1:85987126..85987173,-#_3fae0e5e2bb1461ffb9b9a6907faa3fdp@chr1:85987126..85987173, -
8.61e-17FFCP PHASE2:Hg19::chr1:85987126..85987173,-#_3fae0e5e2bb1461ffb9b9a6907faa3fdp@chr1:85987126..85987173, -
8.66e-17FFCP PHASE1:Hg19::chr3:139000423..139000454,+#_aad0518a5dabf6662a30d4cdf2f9ccacp3@MRPS22
8.66e-17FFCP PHASE2:Hg19::chr3:139000423..139000454,+#_aad0518a5dabf6662a30d4cdf2f9ccacp3@MRPS22
9.03e-17FFCP PHASE1:Hg19::chr17:46627545..46627560,+#_4965deb446ec377d8d65e14c10795d43p@chr17:46627545..46627560, +
9.03e-17FFCP PHASE2:Hg19::chr17:46627545..46627560,+#_4965deb446ec377d8d65e14c10795d43p@chr17:46627545..46627560, +
1.05e-16FFCP PHASE1:Hg19::chr20:4451008..4451026,-#_8bc478fb7fa770443d3be8933d96ec52p@chr20:4451008..4451026, -
1.05e-16FFCP PHASE2:Hg19::chr20:4451008..4451026,-#_8bc478fb7fa770443d3be8933d96ec52p@chr20:4451008..4451026, -