Personal tools

UBERON:0002075

From FANTOM5_SSTAR

Revision as of 08:25, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:viscus
Namespace:FANTOM
Definition:"An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus]
Xrefs:
links:

AAO:0010386
BTO:0001491
EHDAA:512
EMAPA:16245
FMA:7085
MA:0000019
MESH:A.01.960
ncithesaurus:Viscera
RETIRED_EHDAA2:0002201
SCTID:118760003

XAO:0003034
Synonyms: "viscera" RELATED []
"visceral organ" EXACT [RETIRED_EHDAA2:0002201]
Comments:general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs
Alt_id: UBERON:FMA_7085-XAO_0003034
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005177(trunk region element)
part_of:UBERON:0002100(trunk)



Children

is a:UBERON:0001255 (urinary bladder),UBERON:0001264 (pancreas),UBERON:0017672 (abdominal viscera)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002075 (viscus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.68e-54FFCP PHASE1:Mm9::chr19:58804381..58804392,+#_712128b96e943229b60e61e81d884966p@chr19:58804381..58804392, +
1.68e-54FFCP PHASE2:Mm9::chr6:30494986..30494997,+#_712128b96e943229b60e61e81d884966p@chr6:30494986..30494997, +
1.68e-54FFCP PHASE2:Mm9::chr19:58804381..58804392,+#_712128b96e943229b60e61e81d884966p@chr19:58804381..58804392, +
1.68e-54FFCP PHASE1:Mm9::chr6:30494986..30494997,+#_712128b96e943229b60e61e81d884966p@chr6:30494986..30494997, +
1.92e-50FFCP PHASE2:Mm9::chr19:58815004..58815018,+#_02472c280ceb326d732fa4cb123ab646p@chr19:58815004..58815018, +
1.92e-50FFCP PHASE1:Mm9::chr19:58815004..58815018,+#_02472c280ceb326d732fa4cb123ab646p@chr19:58815004..58815018, +
5.23e-50FFCP PHASE1:Mm9::chr2:19410182..19410200,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr2:19410182..19410200, +
5.23e-50FFCP PHASE2:Mm9::chr8:114225711..114225718,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr8:114225711..114225718, +
5.23e-50FFCP PHASE2:Mm9::chr2:19374076..19374083,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p2@ENSMUST00000149577
5.23e-50FFCP PHASE2:Mm9::chr8:114214659..114214665,-#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr8:114214659..114214665, -
5.23e-50FFCP PHASE1:Mm9::chr8:114212440..114212443,-#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr8:114212440..114212443, -
5.23e-50FFCP PHASE1:Mm9::chr9:60297477..60297496,-#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr9:60297477..60297496, -
5.23e-50FFCP PHASE1:Mm9::chr8:114225711..114225718,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr8:114225711..114225718, +
5.23e-50FFCP PHASE2:Mm9::chr9:60297477..60297496,-#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr9:60297477..60297496, -
5.23e-50FFCP PHASE1:Mm9::chr8:114214659..114214665,-#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr8:114214659..114214665, -
5.23e-50FFCP PHASE1:Mm9::chr2:19374076..19374083,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p2@ENSMUST00000149577
5.23e-50FFCP PHASE2:Mm9::chr15:52127064..52127100,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p2@Slc30a8
5.23e-50FFCP PHASE2:Mm9::chr8:114212440..114212443,-#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr8:114212440..114212443, -
5.23e-50FFCP PHASE1:Mm9::chr5:54068360..54068364,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr5:54068360..54068364, +
5.23e-50FFCP PHASE2:Mm9::chr5:54068360..54068364,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr5:54068360..54068364, +
5.23e-50FFCP PHASE1:Mm9::chr15:52127064..52127100,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p2@Slc30a8
5.23e-50FFCP PHASE2:Mm9::chr13:59680417..59680420,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr13:59680417..59680420, +
5.23e-50FFCP PHASE1:Mm9::chr13:59680417..59680420,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr13:59680417..59680420, +
5.23e-50FFCP PHASE2:Mm9::chr2:19410182..19410200,+#_0d47e3e8cdc1c5d37b5263493d1de0f6p@chr2:19410182..19410200, +
3.33e-48FFCP PHASE2:Mm9::chr9:69950924..69950949,-#_3bb6297dd5e294578a20ffbaa67f9c22p4@Fam81a
3.33e-48FFCP PHASE1:Mm9::chr9:69950924..69950949,-#_3bb6297dd5e294578a20ffbaa67f9c22p4@Fam81a
5.18e-48FFCP PHASE1:Mm9::chr6:30501460..30501464,+#_53b8e327613d2b3412f33c906b68ea36p3@Cpa2
5.18e-48FFCP PHASE2:Mm9::chr6:30501460..30501464,+#_53b8e327613d2b3412f33c906b68ea36p3@Cpa2
6.36e-47FFCP PHASE2:Mm9::chr7:31343792..31343804,-#_49f2045c2db0ec41dec863a6b3565cd2p@chr7:31343792..31343804, -
6.36e-47FFCP PHASE1:Mm9::chr7:31343792..31343804,-#_49f2045c2db0ec41dec863a6b3565cd2p@chr7:31343792..31343804, -
5.92e-46FFCP PHASE1:Mm9::chr19:58818563..58818576,-#_d92299b924780e2edd7318e1a60ba56dp@chr19:58818563..58818576, -
5.92e-46FFCP PHASE1:Mm9::chr5:54098551..54098567,-#_d92299b924780e2edd7318e1a60ba56dp4@Cckar
5.92e-46FFCP PHASE2:Mm9::chr5:54097752..54097764,-#_d92299b924780e2edd7318e1a60ba56dp@chr5:54097752..54097764, -
5.92e-46FFCP PHASE1:Mm9::chr8:114215028..114215041,-#_d92299b924780e2edd7318e1a60ba56dp2@Ctrb1
5.92e-46FFCP PHASE2:Mm9::chr19:58818563..58818576,-#_d92299b924780e2edd7318e1a60ba56dp@chr19:58818563..58818576, -
5.92e-46FFCP PHASE2:Mm9::chr5:54098551..54098567,-#_d92299b924780e2edd7318e1a60ba56dp4@Cckar
5.92e-46FFCP PHASE2:Mm9::chr8:114215028..114215041,-#_d92299b924780e2edd7318e1a60ba56dp2@Ctrb1
5.92e-46FFCP PHASE2:Mm9::chr15:52127197..52127209,+#_d92299b924780e2edd7318e1a60ba56dp1@Slc30a8
5.92e-46FFCP PHASE1:Mm9::chr5:54097752..54097764,-#_d92299b924780e2edd7318e1a60ba56dp@chr5:54097752..54097764, -
5.92e-46FFCP PHASE1:Mm9::chr15:52127197..52127209,+#_d92299b924780e2edd7318e1a60ba56dp1@Slc30a8
6.54e-46FFCP PHASE2:Mm9::chr17:46727416..46727433,-#_a7df30be2abc09149b37a0fbe37bea9ap@chr17:46727416..46727433, -
6.54e-46FFCP PHASE1:Mm9::chr17:46727416..46727433,-#_a7df30be2abc09149b37a0fbe37bea9ap@chr17:46727416..46727433, -
7.97e-46FFCP PHASE1:Mm9::chr18:34531496..34531499,-#_6aadd3980f26f6b07b9cc1eb6e3e45c8p@chr18:34531496..34531499, -
7.97e-46FFCP PHASE2:Mm9::chr18:34531496..34531499,-#_6aadd3980f26f6b07b9cc1eb6e3e45c8p@chr18:34531496..34531499, -
1.55e-45FFCP PHASE1:Mm9::chr6:51270916..51270924,-#_5275667342e59ed22478330b3ad2d823p@chr6:51270916..51270924, -
1.55e-45FFCP PHASE2:Mm9::chr5:43495214..43495226,+#_5275667342e59ed22478330b3ad2d823p@chr5:43495214..43495226, +
1.55e-45FFCP PHASE1:Mm9::chr19:58812844..58812855,+#_5275667342e59ed22478330b3ad2d823p@chr19:58812844..58812855, +
1.55e-45FFCP PHASE1:Mm9::chr8:114214342..114214354,-#_5275667342e59ed22478330b3ad2d823p@chr8:114214342..114214354, -
1.55e-45FFCP PHASE2:Mm9::chr11:104162667..104162680,-#_5275667342e59ed22478330b3ad2d823p@chr11:104162667..104162680, -
1.55e-45FFCP PHASE2:Mm9::chr19:58812793..58812802,+#_5275667342e59ed22478330b3ad2d823p@chr19:58812793..58812802, +
1.55e-45FFCP PHASE1:Mm9::chr18:17942879..17942880,-#_5275667342e59ed22478330b3ad2d823p@chr18:17942879..17942880, -
1.55e-45FFCP PHASE2:Mm9::chr4:141378178..141378181,-#_5275667342e59ed22478330b3ad2d823p@chr4:141378178..141378181, -
1.55e-45FFCP PHASE2:Mm9::chr7:29325737..29325747,+#_5275667342e59ed22478330b3ad2d823p3@Sycn
1.55e-45FFCP PHASE1:Mm9::chr19:58813935..58813941,+#_5275667342e59ed22478330b3ad2d823p@chr19:58813935..58813941, +
1.55e-45FFCP PHASE2:Mm9::chr19:58812844..58812855,+#_5275667342e59ed22478330b3ad2d823p@chr19:58812844..58812855, +
1.55e-45FFCP PHASE1:Mm9::chr11:104162667..104162680,-#_5275667342e59ed22478330b3ad2d823p@chr11:104162667..104162680, -
1.55e-45FFCP PHASE2:Mm9::chr6:51270916..51270924,-#_5275667342e59ed22478330b3ad2d823p@chr6:51270916..51270924, -
1.55e-45FFCP PHASE2:Mm9::chr18:17942879..17942880,-#_5275667342e59ed22478330b3ad2d823p@chr18:17942879..17942880, -
1.55e-45FFCP PHASE2:Mm9::chr7:130565024..130565035,+#_5275667342e59ed22478330b3ad2d823p2@Lcmt1
1.55e-45FFCP PHASE1:Mm9::chr8:114210563..114210566,+#_5275667342e59ed22478330b3ad2d823p@chr8:114210563..114210566, +
1.55e-45FFCP PHASE1:Mm9::chr5:43495214..43495226,+#_5275667342e59ed22478330b3ad2d823p@chr5:43495214..43495226, +
1.55e-45FFCP PHASE1:Mm9::chr4:141378178..141378181,-#_5275667342e59ed22478330b3ad2d823p@chr4:141378178..141378181, -
1.55e-45FFCP PHASE1:Mm9::chr15:37020111..37020125,+#_5275667342e59ed22478330b3ad2d823p@chr15:37020111..37020125, +
1.55e-45FFCP PHASE2:Mm9::chr16:62881258..62881265,-#_5275667342e59ed22478330b3ad2d823p@chr16:62881258..62881265, -
1.55e-45FFCP PHASE2:Mm9::chr15:37020111..37020125,+#_5275667342e59ed22478330b3ad2d823p@chr15:37020111..37020125, +
1.55e-45FFCP PHASE2:Mm9::chr19:58813935..58813941,+#_5275667342e59ed22478330b3ad2d823p@chr19:58813935..58813941, +
1.55e-45FFCP PHASE2:Mm9::chr8:114210563..114210566,+#_5275667342e59ed22478330b3ad2d823p@chr8:114210563..114210566, +
1.55e-45FFCP PHASE1:Mm9::chr19:58812762..58812772,+#_5275667342e59ed22478330b3ad2d823p@chr19:58812762..58812772, +
1.55e-45FFCP PHASE1:Mm9::chr7:31243262..31243273,+#_5275667342e59ed22478330b3ad2d823p6@Nphs1
1.55e-45FFCP PHASE1:Mm9::chr7:130565024..130565035,+#_5275667342e59ed22478330b3ad2d823p2@Lcmt1
1.55e-45FFCP PHASE2:Mm9::chr8:114214342..114214354,-#_5275667342e59ed22478330b3ad2d823p@chr8:114214342..114214354, -
1.55e-45FFCP PHASE1:Mm9::chr7:29325737..29325747,+#_5275667342e59ed22478330b3ad2d823p3@Sycn
1.55e-45FFCP PHASE1:Mm9::chr19:58812793..58812802,+#_5275667342e59ed22478330b3ad2d823p@chr19:58812793..58812802, +
1.55e-45FFCP PHASE1:Mm9::chr16:62881258..62881265,-#_5275667342e59ed22478330b3ad2d823p@chr16:62881258..62881265, -
1.55e-45FFCP PHASE2:Mm9::chr19:58812762..58812772,+#_5275667342e59ed22478330b3ad2d823p@chr19:58812762..58812772, +
1.55e-45FFCP PHASE1:Mm9::chr18:39522574..39522590,+#_5275667342e59ed22478330b3ad2d823p@chr18:39522574..39522590, +
1.55e-45FFCP PHASE2:Mm9::chr7:31243262..31243273,+#_5275667342e59ed22478330b3ad2d823p6@Nphs1
1.55e-45FFCP PHASE2:Mm9::chr18:39522574..39522590,+#_5275667342e59ed22478330b3ad2d823p@chr18:39522574..39522590, +
2.02e-45FFCP PHASE1:Mm9::chr4:136454147..136454172,-#_3ab11a11e212747460b1742f88639622p@chr4:136454147..136454172, -
2.02e-45FFCP PHASE2:Mm9::chr4:136454147..136454172,-#_3ab11a11e212747460b1742f88639622p@chr4:136454147..136454172, -
6.03e-44FFCP PHASE1:Mm9::chr2:19353621..19353653,-#_c1cca4588da98dbbe759adb6d468797fp1@ENSMUST00000137714
6.03e-44FFCP PHASE2:Mm9::chr2:19353621..19353653,-#_c1cca4588da98dbbe759adb6d468797fp1@ENSMUST00000137714
6.03e-44FFCP PHASE1:Mm9::chr2:28335694..28335705,+#_c1cca4588da98dbbe759adb6d468797fp@chr2:28335694..28335705, +
6.03e-44FFCP PHASE2:Mm9::chr2:28335694..28335705,+#_c1cca4588da98dbbe759adb6d468797fp@chr2:28335694..28335705, +
6.58e-44FFCP PHASE1:Mm9::chr7:31343761..31343766,-#_59dad32c9773462881bbb3d02c4f7fd0p@chr7:31343761..31343766, -
6.58e-44FFCP PHASE2:Mm9::chr7:31343761..31343766,-#_59dad32c9773462881bbb3d02c4f7fd0p@chr7:31343761..31343766, -
7.83e-44FFCP PHASE2:Mm9::chr1:133735373..133735386,+#_cc6e1d99d1bd70c7b7899f683f91b861p@chr1:133735373..133735386, +
7.83e-44FFCP PHASE1:Mm9::chr1:133735373..133735386,+#_cc6e1d99d1bd70c7b7899f683f91b861p@chr1:133735373..133735386, +
7.61e-43FFCP PHASE1:Mm9::chr6:30590915..30590951,-#_7720690762f09999a4288dacd6477417p@chr6:30590915..30590951, -
7.61e-43FFCP PHASE2:Mm9::chr6:30590915..30590951,-#_7720690762f09999a4288dacd6477417p@chr6:30590915..30590951, -
1.6e-42FFCP PHASE2:Mm9::chr19:58811529..58811552,-#_3a052b07e85702dc316448b5a64dabf7p@chr19:58811529..58811552, -
1.6e-42FFCP PHASE1:Mm9::chr8:114214598..114214609,-#_3a052b07e85702dc316448b5a64dabf7p@chr8:114214598..114214609, -
1.6e-42FFCP PHASE2:Mm9::chr8:114214263..114214282,-#_3a052b07e85702dc316448b5a64dabf7p@chr8:114214263..114214282, -
1.6e-42FFCP PHASE1:Mm9::chr3:112959660..112959680,-#_3a052b07e85702dc316448b5a64dabf7p1@Amy2b
1.6e-42FFCP PHASE2:Mm9::chr3:112959660..112959680,-#_3a052b07e85702dc316448b5a64dabf7p1@Amy2b
1.6e-42FFCP PHASE1:Mm9::chr8:114214263..114214282,-#_3a052b07e85702dc316448b5a64dabf7p@chr8:114214263..114214282, -
1.6e-42FFCP PHASE2:Mm9::chr8:114214598..114214609,-#_3a052b07e85702dc316448b5a64dabf7p@chr8:114214598..114214609, -
1.6e-42FFCP PHASE1:Mm9::chr19:58811529..58811552,-#_3a052b07e85702dc316448b5a64dabf7p@chr19:58811529..58811552, -
1.75e-42FFCP PHASE2:Mm9::chr6:51270886..51270895,-#_a1df8df620dd9c67d6a644b6c39a6afap@chr6:51270886..51270895, -
1.75e-42FFCP PHASE1:Mm9::chr6:51270886..51270895,-#_a1df8df620dd9c67d6a644b6c39a6afap@chr6:51270886..51270895, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.