UBERON:0002082: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_7100-MA_0000091-ZFA_0000009 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle." [FMA:7100] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0010226 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002082 | |||
|is_a=UBERON:0004151 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cardiac ventricle | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO]" xsd:string;;UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO]" xsd:string;;UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="heart ventricle" EXACT [];;"lower chamber of heart" EXACT [];;"ventricle" BROAD [];;"ventricle of heart" EXACT [] | ||
|union_of= | |||
|xref=AAO:0010249;;BTO:0000862;;EFO:0000317;;EHDAA2:0004164;;EHDAA:1912;;EMAPA:17331;;EV:0100020;;FMA:7100;;GAID:568;;galen:Ventricle;;MA:0000091;;MAT:0000497;;MESH:A.07.541.560;;ncithesaurus:Cardiac_Ventricle;;OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA;;SCTID:277699000;;TAO:0000009;;VHOG:0000435;;XAO:0003193;;ZFA:0000009 | |||
}} | }} | ||
Latest revision as of 17:25, 12 September 2014
| Name: | cardiac ventricle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle." [FMA:7100] | ||
| Xrefs: |
| ||
| Synonyms: |
"heart ventricle" EXACT [] "lower chamber of heart" EXACT [] "ventricle" BROAD [] "ventricle of heart" EXACT [] | ||
| Alt_id: | UBERON:FMA_7100-MA_0000091-ZFA_0000009 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004151(cardiac chamber) |
|---|---|
| develops_from: | UBERON:0010226(future cardiac ventricle) |
Children
| is a: | UBERON:0002084 (heart left ventricle) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10078-102A6 (left ventricle, adult, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002082 (cardiac ventricle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:37061825..37061832,+#_72c1b25f4040bc111c5ddf79f1dfc0a3 | p@chr3:37061825..37061832, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:37061825..37061832,+#_72c1b25f4040bc111c5ddf79f1dfc0a3 | p@chr3:37061825..37061832, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:46766402..46766412,-#_e09649b8dd5c8f653f9b85c305465373 | p@chr16:46766402..46766412, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:35032687..35032696,-#_e09649b8dd5c8f653f9b85c305465373 | p@chr10:35032687..35032696, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:53417811..53417814,-#_e09649b8dd5c8f653f9b85c305465373 | p@chr4:53417811..53417814, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:46766402..46766412,-#_e09649b8dd5c8f653f9b85c305465373 | p@chr16:46766402..46766412, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:124033810..124033819,-#_e09649b8dd5c8f653f9b85c305465373 | p@chr8:124033810..124033819, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:35032687..35032696,-#_e09649b8dd5c8f653f9b85c305465373 | p@chr10:35032687..35032696, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:124033810..124033819,-#_e09649b8dd5c8f653f9b85c305465373 | p@chr8:124033810..124033819, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:53417811..53417814,-#_e09649b8dd5c8f653f9b85c305465373 | p@chr4:53417811..53417814, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr3:46902281..46902288,-#_5808d8e17afaea49c9b25a13e588a92c | p@chr3:46902281..46902288, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr5:79026919..79026926,+#_5808d8e17afaea49c9b25a13e588a92c | p@chr5:79026919..79026926, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr5:79030927..79030935,+#_5808d8e17afaea49c9b25a13e588a92c | p49@CMYA5 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr3:46902281..46902288,-#_5808d8e17afaea49c9b25a13e588a92c | p@chr3:46902281..46902288, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr5:79030927..79030935,+#_5808d8e17afaea49c9b25a13e588a92c | p49@CMYA5 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr5:79026919..79026926,+#_5808d8e17afaea49c9b25a13e588a92c | p@chr5:79026919..79026926, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:35294320..35294351,+#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr7:35294320..35294351, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr18:6255319..6255336,-#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr18:6255319..6255336, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:35294320..35294351,+#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr7:35294320..35294351, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr22:18403223..18403228,-#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr22:18403223..18403228, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:202431836..202431849,+#_3b000be74f5622f5c2efb4ba6e62d8a9 | p18@PPP1R12B |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:164881611..164881641,-#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr1:164881611..164881641, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:46737348..46737351,-#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr16:46737348..46737351, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr18:6255319..6255336,-#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr18:6255319..6255336, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:660023..660044,+#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr12:660023..660044, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:202431911..202431922,+#_3b000be74f5622f5c2efb4ba6e62d8a9 | p12@PPP1R12B |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:202431836..202431849,+#_3b000be74f5622f5c2efb4ba6e62d8a9 | p18@PPP1R12B |
| 2.39e-66 | FFCP PHASE1:Hg19::chr22:18403223..18403228,-#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr22:18403223..18403228, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:46737348..46737351,-#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr16:46737348..46737351, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:660023..660044,+#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr12:660023..660044, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:202431911..202431922,+#_3b000be74f5622f5c2efb4ba6e62d8a9 | p12@PPP1R12B |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:164881611..164881641,-#_3b000be74f5622f5c2efb4ba6e62d8a9 | p@chr1:164881611..164881641, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:26165179..26165190,+#_e6b3ef65d3952586185ea3c5a22975fa | p47@RBPJ |
| 4.66e-66 | FFCP PHASE1:Hg19::chr20:55732283..55732288,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr20:55732283..55732288, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:101878835..101878850,+#_e6b3ef65d3952586185ea3c5a22975fa | p16@C2orf29 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:1154360..1154365,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr1:1154360..1154365, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:29812740..29812749,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr10:29812740..29812749, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr20:20069786..20069797,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr20:20069786..20069797, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:101878835..101878850,+#_e6b3ef65d3952586185ea3c5a22975fa | p16@C2orf29 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:46901107..46901114,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr3:46901107..46901114, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:26165179..26165190,+#_e6b3ef65d3952586185ea3c5a22975fa | p47@RBPJ |
| 4.66e-66 | FFCP PHASE2:Hg19::chr20:55732283..55732288,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr20:55732283..55732288, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:179581909..179581915,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr2:179581909..179581915, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:170374754..170374760,+#_e6b3ef65d3952586185ea3c5a22975fa | p@chr2:170374754..170374760, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:29812740..29812749,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr10:29812740..29812749, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:1154360..1154365,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr1:1154360..1154365, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:46901107..46901114,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr3:46901107..46901114, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:31933122..31933152,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr7:31933122..31933152, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr20:20069786..20069797,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr20:20069786..20069797, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:179581909..179581915,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr2:179581909..179581915, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:170374754..170374760,+#_e6b3ef65d3952586185ea3c5a22975fa | p@chr2:170374754..170374760, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:31933122..31933152,-#_e6b3ef65d3952586185ea3c5a22975fa | p@chr7:31933122..31933152, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr12:56091538..56091540,-#_bb70a1ea4ef503491f7373ad6e15208f | p@chr12:56091538..56091540, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr12:56091538..56091540,-#_bb70a1ea4ef503491f7373ad6e15208f | p@chr12:56091538..56091540, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr14:23893278..23893279,-#_bb70a1ea4ef503491f7373ad6e15208f | p41@MYH7 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr5:80555040..80555044,+#_bb70a1ea4ef503491f7373ad6e15208f | p@chr5:80555040..80555044, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr14:23893278..23893279,-#_bb70a1ea4ef503491f7373ad6e15208f | p41@MYH7 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr5:80555040..80555044,+#_bb70a1ea4ef503491f7373ad6e15208f | p@chr5:80555040..80555044, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr1:202431859..202431868,+#_f4a770a309b857e96e32fe55c0213606 | p20@PPP1R12B |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:89647309..89647352,+#_f4a770a309b857e96e32fe55c0213606 | p@chr15:89647309..89647352, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:220495902..220495903,+#_f4a770a309b857e96e32fe55c0213606 | p25@SLC4A3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:89647309..89647352,+#_f4a770a309b857e96e32fe55c0213606 | p@chr15:89647309..89647352, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr5:79028810..79028818,+#_f4a770a309b857e96e32fe55c0213606 | p50@CMYA5 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:109384584..109384612,+#_f4a770a309b857e96e32fe55c0213606 | p10@RANBP2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr6:164383767..164383779,-#_f4a770a309b857e96e32fe55c0213606 | p@chr6:164383767..164383779, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr5:79028810..79028818,+#_f4a770a309b857e96e32fe55c0213606 | p50@CMYA5 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr6:164383767..164383779,-#_f4a770a309b857e96e32fe55c0213606 | p@chr6:164383767..164383779, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:182186203..182186217,-#_f4a770a309b857e96e32fe55c0213606 | p1@ENST00000512547 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr6:144329347..144329355,+#_f4a770a309b857e96e32fe55c0213606 | p@chr6:144329347..144329355, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr1:202431859..202431868,+#_f4a770a309b857e96e32fe55c0213606 | p20@PPP1R12B |
| 2.42e-50 | FFCP PHASE1:Hg19::chr6:144329347..144329355,+#_f4a770a309b857e96e32fe55c0213606 | p@chr6:144329347..144329355, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr6:123760856..123760861,+#_f4a770a309b857e96e32fe55c0213606 | p4@ENST00000427828, p4@ENST00000434768 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:109384584..109384612,+#_f4a770a309b857e96e32fe55c0213606 | p10@RANBP2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr6:123760856..123760861,+#_f4a770a309b857e96e32fe55c0213606 | p4@ENST00000427828, p4@ENST00000434768 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:18708993..18709004,-#_f4a770a309b857e96e32fe55c0213606 | p@chr8:18708993..18709004, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:220495902..220495903,+#_f4a770a309b857e96e32fe55c0213606 | p25@SLC4A3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:18708993..18709004,-#_f4a770a309b857e96e32fe55c0213606 | p@chr8:18708993..18709004, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:182186203..182186217,-#_f4a770a309b857e96e32fe55c0213606 | p1@ENST00000512547 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:179414945..179414955,-#_19111699251c18cf646fd2601d39ba7e | p@chr2:179414945..179414955, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:57112800..57112809,-#_19111699251c18cf646fd2601d39ba7e | p@chr12:57112800..57112809, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:23854188..23854193,-#_19111699251c18cf646fd2601d39ba7e | p@chr14:23854188..23854193, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:119953362..119953372,+#_19111699251c18cf646fd2601d39ba7e | p@chr4:119953362..119953372, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:179414945..179414955,-#_19111699251c18cf646fd2601d39ba7e | p@chr2:179414945..179414955, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr18:19769123..19769149,+#_19111699251c18cf646fd2601d39ba7e | p@chr18:19769123..19769149, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:15679051..15679071,-#_19111699251c18cf646fd2601d39ba7e | p@chr2:15679051..15679071, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:57112800..57112809,-#_19111699251c18cf646fd2601d39ba7e | p@chr12:57112800..57112809, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:69168395..69168418,-#_19111699251c18cf646fd2601d39ba7e | p@chr3:69168395..69168418, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:23854188..23854193,-#_19111699251c18cf646fd2601d39ba7e | p@chr14:23854188..23854193, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr15:44172060..44172067,-#_19111699251c18cf646fd2601d39ba7e | p@chr15:44172060..44172067, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:119953362..119953372,+#_19111699251c18cf646fd2601d39ba7e | p@chr4:119953362..119953372, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:15679051..15679071,-#_19111699251c18cf646fd2601d39ba7e | p@chr2:15679051..15679071, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:69168395..69168418,-#_19111699251c18cf646fd2601d39ba7e | p@chr3:69168395..69168418, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr15:44172060..44172067,-#_19111699251c18cf646fd2601d39ba7e | p@chr15:44172060..44172067, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr18:19769123..19769149,+#_19111699251c18cf646fd2601d39ba7e | p@chr18:19769123..19769149, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:36812270..36812277,-#_51c8ec90f572f75771b035157b73a363 | p@chr6:36812270..36812277, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr16:8736179..8736193,+#_51c8ec90f572f75771b035157b73a363 | p@chr16:8736179..8736193, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr20:32029111..32029122,-#_51c8ec90f572f75771b035157b73a363 | p@chr20:32029111..32029122, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:36812270..36812277,-#_51c8ec90f572f75771b035157b73a363 | p@chr6:36812270..36812277, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:107121368..107121392,-#_51c8ec90f572f75771b035157b73a363 | p10@COG5 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:20070858..20070863,-#_51c8ec90f572f75771b035157b73a363 | p5@NAV2-AS2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
