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Difference between revisions of "UBERON:0002110"

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|subset=organ_slim;;uberon_slim;;vertebrate_core
 
|subset=organ_slim;;uberon_slim;;vertebrate_core
 
|derives_from=
 
|derives_from=
|develops_from=
+
|develops_from=UBERON:0004912;;UBERON:0006242
 
|has_quality=
 
|has_quality=
 
|located_in=
 
|located_in=
|part_of=
+
|part_of=UBERON:0000916;;UBERON:0001173;;UBERON:0002294;;UBERON:0002323
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:10114;;UBPROP:0000001 "Organ attached to the liver which stores bile and empties into the duodenum via the bile duct as needed for digestion.[AAO]" xsd:string;;UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:10114;;UBPROP:0000001 "Organ attached to the liver which stores bile and empties into the duodenum via the bile duct as needed for digestion.[AAO]" xsd:string;;UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string
 
|is_obsolete=
 
|is_obsolete=
 
|preceded_by=
 
|preceded_by=
 
}}
 
}}

Revision as of 04:30, 27 June 2012

Name:gallbladder
Definition:"a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]." [FMA:7202, Wikipedia:Gallbladder]
Xrefs:
links:

AAO:0010114
BTO:0000493
EFO:0000853
EHDAA2:0000699
EHDAA:8062
EMAPA:17202
EV:0100090
FMA:7202
galen:Gallbladder
[1]
[ 200px-Abdomal_organs.svg.png 200px-Abdomal_organs.svg.png]
MA:0000356
MAT:0000072
MESH:A.03.159.439
MIAA:0000072
ncithesaurus:Gallbladder
OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA
SCTID:181269000
TAO:0000208
VHOG:0000221
XAO:0000135

ZFA:0000208
Synonyms: "gall bladder" EXACT []
"vesica fellea; vesica biliaris" RELATED LATIN [Wikipedia:Gallbladder]
Comments:Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988)
Alt_id: UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002075(viscus),UBERON:0004119(endoderm-derived structure),UBERON:0005172(abdomen element)
develops_from:UBERON:0004912(biliary bud),UBERON:0006242(gall bladder primordium)
part_of:UBERON:0000916(abdomen),UBERON:0001173(biliary tree),UBERON:0002294(biliary system),UBERON:0002323(body cavity)



Children

derives from:FF:0010198 (human gall bladder - adult sample)
part of:CL:1000415 (epithelial cell of gall bladder)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002110 (gallbladder), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.39e-66FFCP PHASE1:Hg19::chr11:1247434..1247435,+#_413be64bdf0b645679af706b510beabap@chr11:1247434..1247435, +
2.39e-66FFCP PHASE1:Hg19::chr18:2351233..2351242,+#_413be64bdf0b645679af706b510beabap@chr18:2351233..2351242, +
2.39e-66FFCP PHASE2:Hg19::chr9:95737958..95737978,+#_413be64bdf0b645679af706b510beabap@chr9:95737958..95737978, +
2.39e-66FFCP PHASE1:Hg19::chr3:145127555..145127558,+#_413be64bdf0b645679af706b510beabap@chr3:145127555..145127558, +
2.39e-66FFCP PHASE1:Hg19::chr20:4100596..4100603,+#_413be64bdf0b645679af706b510beabap5@BC027448
2.39e-66FFCP PHASE1:Hg19::chr3:193561605..193561612,-#_413be64bdf0b645679af706b510beabap3@ENST00000439074
2.39e-66FFCP PHASE1:Hg19::chr2:42157397..42157411,-#_413be64bdf0b645679af706b510beabap@chr2:42157397..42157411, -
2.39e-66FFCP PHASE1:Hg19::chr5:25649889..25649911,-#_413be64bdf0b645679af706b510beabap@chr5:25649889..25649911, -
2.39e-66FFCP PHASE1:Hg19::chr21:43783664..43783667,+#_413be64bdf0b645679af706b510beabap@chr21:43783664..43783667, +
2.39e-66FFCP PHASE2:Hg19::chr14:103470614..103470619,-#_413be64bdf0b645679af706b510beabap17@CDC42BPB
2.39e-66FFCP PHASE1:Hg19::chr14:38091563..38091607,+#_413be64bdf0b645679af706b510beabap@chr14:38091563..38091607, +
2.39e-66FFCP PHASE2:Hg19::chr20:4100562..4100570,+#_413be64bdf0b645679af706b510beabap4@BC027448
2.39e-66FFCP PHASE2:Hg19::chr2:42157172..42157179,-#_413be64bdf0b645679af706b510beabap@chr2:42157172..42157179, -
2.39e-66FFCP PHASE1:Hg19::chr4:26491064..26491072,-#_413be64bdf0b645679af706b510beabap@chr4:26491064..26491072, -
2.39e-66FFCP PHASE1:Hg19::chr4:117626532..117626537,+#_413be64bdf0b645679af706b510beabap@chr4:117626532..117626537, +
2.39e-66FFCP PHASE1:Hg19::chr4:189258158..189258183,-#_413be64bdf0b645679af706b510beabap@chr4:189258158..189258183, -
2.39e-66FFCP PHASE2:Hg19::chr11:1252161..1252166,+#_413be64bdf0b645679af706b510beabap@chr11:1252161..1252166, +
2.39e-66FFCP PHASE2:Hg19::chr3:145127555..145127558,+#_413be64bdf0b645679af706b510beabap@chr3:145127555..145127558, +
2.39e-66FFCP PHASE2:Hg19::chr18:2351233..2351242,+#_413be64bdf0b645679af706b510beabap@chr18:2351233..2351242, +
2.39e-66FFCP PHASE2:Hg19::chr20:4100596..4100603,+#_413be64bdf0b645679af706b510beabap5@BC027448
2.39e-66FFCP PHASE2:Hg19::chr2:42157397..42157411,-#_413be64bdf0b645679af706b510beabap@chr2:42157397..42157411, -
2.39e-66FFCP PHASE2:Hg19::chr3:193561605..193561612,-#_413be64bdf0b645679af706b510beabap3@ENST00000439074
2.39e-66FFCP PHASE1:Hg19::chr9:95737958..95737978,+#_413be64bdf0b645679af706b510beabap@chr9:95737958..95737978, +
2.39e-66FFCP PHASE2:Hg19::chr10:103952998..103953003,-#_413be64bdf0b645679af706b510beabap@chr10:103952998..103953003, -
2.39e-66FFCP PHASE2:Hg19::chr5:25649889..25649911,-#_413be64bdf0b645679af706b510beabap@chr5:25649889..25649911, -
2.39e-66FFCP PHASE2:Hg19::chr21:43783664..43783667,+#_413be64bdf0b645679af706b510beabap@chr21:43783664..43783667, +
2.39e-66FFCP PHASE1:Hg19::chr11:1252161..1252166,+#_413be64bdf0b645679af706b510beabap@chr11:1252161..1252166, +
2.39e-66FFCP PHASE2:Hg19::chr11:1247434..1247435,+#_413be64bdf0b645679af706b510beabap@chr11:1247434..1247435, +
2.39e-66FFCP PHASE1:Hg19::chr14:103470614..103470619,-#_413be64bdf0b645679af706b510beabap17@CDC42BPB
2.39e-66FFCP PHASE2:Hg19::chr4:26491064..26491072,-#_413be64bdf0b645679af706b510beabap@chr4:26491064..26491072, -
2.39e-66FFCP PHASE2:Hg19::chr14:38091563..38091607,+#_413be64bdf0b645679af706b510beabap@chr14:38091563..38091607, +
2.39e-66FFCP PHASE1:Hg19::chr20:4100562..4100570,+#_413be64bdf0b645679af706b510beabap4@BC027448
2.39e-66FFCP PHASE2:Hg19::chr4:117626532..117626537,+#_413be64bdf0b645679af706b510beabap@chr4:117626532..117626537, +
2.39e-66FFCP PHASE1:Hg19::chr10:103952998..103953003,-#_413be64bdf0b645679af706b510beabap@chr10:103952998..103953003, -
2.39e-66FFCP PHASE2:Hg19::chr4:189258158..189258183,-#_413be64bdf0b645679af706b510beabap@chr4:189258158..189258183, -
2.39e-66FFCP PHASE1:Hg19::chr2:42157172..42157179,-#_413be64bdf0b645679af706b510beabap@chr2:42157172..42157179, -
2.4e-66FFCP PHASE2:Hg19::chr17:79429043..79429051,-#_870d2f600bfe77f0f94baa18cb879f51p@chr17:79429043..79429051, -
2.4e-66FFCP PHASE1:Hg19::chr17:79429043..79429051,-#_870d2f600bfe77f0f94baa18cb879f51p@chr17:79429043..79429051, -
4.89e-53FFCP PHASE1:Hg19::chr11:111154964..111154975,+#_391594abcc235208f971631c9bb79801p4@C11orf53
4.89e-53FFCP PHASE2:Hg19::chr11:111154964..111154975,+#_391594abcc235208f971631c9bb79801p4@C11orf53
4.27e-34FFCP PHASE2:Hg19::chr17:67559529..67559532,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr17:67559529..67559532, +
4.27e-34FFCP PHASE1:Hg19::chr5:147645292..147645302,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr5:147645292..147645302, +
4.27e-34FFCP PHASE1:Hg19::chr21:43770332..43770340,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr21:43770332..43770340, -
4.27e-34FFCP PHASE2:Hg19::chr18:35871337..35871346,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr18:35871337..35871346, +
4.27e-34FFCP PHASE1:Hg19::chr11:1247439..1247442,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr11:1247439..1247442, +
4.27e-34FFCP PHASE2:Hg19::chr19:28401158..28401162,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr19:28401158..28401162, -
4.27e-34FFCP PHASE2:Hg19::chr12:113448406..113448411,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp14@OAS2
4.27e-34FFCP PHASE2:Hg19::chr5:147644551..147644576,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr5:147644551..147644576, +
4.27e-34FFCP PHASE2:Hg19::chr1:187929602..187929615,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr1:187929602..187929615, +
4.27e-34FFCP PHASE2:Hg19::chr18:2351165..2351175,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr18:2351165..2351175, +
4.27e-34FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr5:111570472..111570478, -
4.27e-34FFCP PHASE2:Hg19::chr11:1262749..1262754,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr11:1262749..1262754, +
4.27e-34FFCP PHASE2:Hg19::chrX:29431271..29431280,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chrX:29431271..29431280, +
4.27e-34FFCP PHASE2:Hg19::chr4:190861941..190861951,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp3@FRG1
4.27e-34FFCP PHASE1:Hg19::chr6:13191432..13191436,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr6:13191432..13191436, -
4.27e-34FFCP PHASE1:Hg19::chr9:95737369..95737393,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp18@FGD3
4.27e-34FFCP PHASE1:Hg19::chr21:28226981..28227000,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr21:28226981..28227000, +
4.27e-34FFCP PHASE1:Hg19::chr7:114026271..114026287,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr7:114026271..114026287, -
4.27e-34FFCP PHASE2:Hg19::chr5:147645292..147645302,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr5:147645292..147645302, +
4.27e-34FFCP PHASE2:Hg19::chr10:124050589..124050596,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp15@BTBD16
4.27e-34FFCP PHASE1:Hg19::chr12:113448406..113448411,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp14@OAS2
4.27e-34FFCP PHASE1:Hg19::chr17:67559529..67559532,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr17:67559529..67559532, +
4.27e-34FFCP PHASE2:Hg19::chr11:86501763..86501768,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp33@PRSS23
4.27e-34FFCP PHASE2:Hg19::chr21:43770332..43770340,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr21:43770332..43770340, -
4.27e-34FFCP PHASE1:Hg19::chr11:1262749..1262754,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr11:1262749..1262754, +
4.27e-34FFCP PHASE1:Hg19::chr18:35871337..35871346,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr18:35871337..35871346, +
4.27e-34FFCP PHASE1:Hg19::chr19:28401158..28401162,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr19:28401158..28401162, -
4.27e-34FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr11:1263382..1263385, +
4.27e-34FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr11:1260725..1260734, +
4.27e-34FFCP PHASE1:Hg19::chr10:124050589..124050596,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp15@BTBD16
4.27e-34FFCP PHASE2:Hg19::chr6:13191432..13191436,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr6:13191432..13191436, -
4.27e-34FFCP PHASE1:Hg19::chr18:2351165..2351175,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr18:2351165..2351175, +
4.27e-34FFCP PHASE1:Hg19::chr5:147644551..147644576,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr5:147644551..147644576, +
4.27e-34FFCP PHASE1:Hg19::chr11:86501763..86501768,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp33@PRSS23
4.27e-34FFCP PHASE2:Hg19::chr21:28226981..28227000,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr21:28226981..28227000, +
4.27e-34FFCP PHASE2:Hg19::chr9:95737369..95737393,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp18@FGD3
4.27e-34FFCP PHASE1:Hg19::chr1:187929602..187929615,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr1:187929602..187929615, +
4.27e-34FFCP PHASE1:Hg19::chr5:111570472..111570478,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr5:111570472..111570478, -
4.27e-34FFCP PHASE1:Hg19::chrX:29431271..29431280,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chrX:29431271..29431280, +
4.27e-34FFCP PHASE1:Hg19::chr4:190861941..190861951,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp3@FRG1
4.27e-34FFCP PHASE2:Hg19::chr7:114026271..114026287,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr7:114026271..114026287, -
4.27e-34FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr11:1260725..1260734, +
4.27e-34FFCP PHASE2:Hg19::chr11:1247439..1247442,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr11:1247439..1247442, +
4.27e-34FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bdp@chr11:1263382..1263385, +
5.96e-34FFCP PHASE2:Hg19::chr17:37880326..37880328,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr17:37880326..37880328, -
5.96e-34FFCP PHASE1:Hg19::chr5:498417..498421,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr5:498417..498421, -
5.96e-34FFCP PHASE2:Hg19::chr4:59982412..59982425,+#_d9cf2bbf38313bd4cf61edad4ed983aep@chr4:59982412..59982425, +
5.96e-34FFCP PHASE1:Hg19::chr7:117355942..117355945,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr7:117355942..117355945, -
5.96e-34FFCP PHASE2:Hg19::chr10:6777736..6777754,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr10:6777736..6777754, -
5.96e-34FFCP PHASE1:Hg19::chr2:120974061..120974068,-#_d9cf2bbf38313bd4cf61edad4ed983aep3@ENST00000455707
5.96e-34FFCP PHASE1:Hg19::chr10:66386701..66386711,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr10:66386701..66386711, -
5.96e-34FFCP PHASE2:Hg19::chr2:27529092..27529098,+#_d9cf2bbf38313bd4cf61edad4ed983aep@chr2:27529092..27529098, +
5.96e-34FFCP PHASE1:Hg19::chr1:187929716..187929735,+#_d9cf2bbf38313bd4cf61edad4ed983aep@chr1:187929716..187929735, +
5.96e-34FFCP PHASE2:Hg19::chr18:61420303..61420306,+#_d9cf2bbf38313bd4cf61edad4ed983aep17@SERPINB7
5.96e-34FFCP PHASE1:Hg19::chr18:55095246..55095262,+#_d9cf2bbf38313bd4cf61edad4ed983aep@chr18:55095246..55095262, +
5.96e-34FFCP PHASE1:Hg19::chr5:499767..499777,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr5:499767..499777, -
5.96e-34FFCP PHASE2:Hg19::chr5:37852067..37852074,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr5:37852067..37852074, -
5.96e-34FFCP PHASE2:Hg19::chr18:69477752..69477762,+#_d9cf2bbf38313bd4cf61edad4ed983aep@chr18:69477752..69477762, +
5.96e-34FFCP PHASE2:Hg19::chr22:50723475..50723477,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr22:50723475..50723477, -
5.96e-34FFCP PHASE2:Hg19::chr14:47289644..47289662,-#_d9cf2bbf38313bd4cf61edad4ed983aep@chr14:47289644..47289662, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ attached to the liver which stores bile and empties into the duodenum via the bile duct as needed for digestion.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.