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UBERON:0002412

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Name:vertebra
Namespace:FANTOM
Definition:"Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]." [FMA:9914, Wikipedia:Vertebra, ZFIN:curator]
Xrefs:
links:

AAO:0000691
EFO:0001371
FMA:9914
galen:Vertebra
MA:0000309
ncithesaurus:Vertebra
OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA
SCTID:181817002
TAO:0001189
VHOG:0001143
XAO:0004019

ZFA:0001189
Synonyms: "vertebra bone" EXACT []
Comments:Editor notes: Consider changing name to make distinction from inferred superclass 'vertebral element' clear
Alt_id: UBERON:FMA_9914-MA_0000309-ZFA_0001189
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002513(endochondral bone),UBERON:0008001(irregular bone),UBERON:0010913(vertebral element),UBERON:0015005(vertebra endochondral element)
develops_from:UBERON:0011094(vertebra cartilage element)
part_of:UBERON:0001130(vertebral column)



Children

part of:CL:0002572 (vertebral mesenchymal stem cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002412 (vertebra), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.