UBERON:0002437: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 10: | Line 10: | ||
|has_quality= | |has_quality= | ||
|id=UBERON:0002437 | |id=UBERON:0002437 | ||
|is_a=UBERON: | |is_a=UBERON:0011299 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=cerebral white matter | |name=cerebral hemisphere white matter | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON: | |part_of=UBERON:0001869 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
Latest revision as of 17:32, 12 September 2014
| Name: | cerebral hemisphere white matter | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_711] | ||
| Xrefs: |
| ||
| Alt_id: | UBERON:MA_0000945-FMA_241998 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011299(white matter of telencephalon) |
|---|---|
| part_of: | UBERON:0001869(cerebral hemisphere) |
Children
| part of: | UBERON:0002473 (intercerebral commissure) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10042-101F6 (corpus callosum, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002437 (cerebral hemisphere white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_fca4ab32ef4cdfed20a448f739d27f35 | p3@BC032909, p3@BC032910 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_fca4ab32ef4cdfed20a448f739d27f35 | p@chr15:93827399..93827403, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_fca4ab32ef4cdfed20a448f739d27f35 | p@chr15:93827399..93827403, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_fca4ab32ef4cdfed20a448f739d27f35 | p@chr17:73689469..73689476, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_fca4ab32ef4cdfed20a448f739d27f35 | p@chr14:36462819..36462832, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_fca4ab32ef4cdfed20a448f739d27f35 | p@chr14:36462819..36462832, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_fca4ab32ef4cdfed20a448f739d27f35 | p@chr17:73689469..73689476, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_fca4ab32ef4cdfed20a448f739d27f35 | p3@BC032909, p3@BC032910 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_4ba5d594ba9830c039e995877dbf67c6 | p@chr11:110248322..110248329, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_4ba5d594ba9830c039e995877dbf67c6 | p@chr11:110248322..110248329, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_4ba5d594ba9830c039e995877dbf67c6 | p@chr2:232548018..232548022, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_4ba5d594ba9830c039e995877dbf67c6 | p@chr2:232548018..232548022, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_4ba5d594ba9830c039e995877dbf67c6 | p@chr14:33926303..33926307, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_4ba5d594ba9830c039e995877dbf67c6 | p@chr14:33926303..33926307, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_4ba5d594ba9830c039e995877dbf67c6 | p41@NAV3 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_4ba5d594ba9830c039e995877dbf67c6 | p41@NAV3 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_bd77259d8fd64c5b899424318cb3e771 | p10@SH3BP5 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_bd77259d8fd64c5b899424318cb3e771 | p@chr19:35788742..35788752, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_bd77259d8fd64c5b899424318cb3e771 | p@chr19:35788742..35788752, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_bd77259d8fd64c5b899424318cb3e771 | p10@SH3BP5 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_d3bdc90f4c7b4abe523c656963cfab03 | p@chr7:124391226..124391235, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_d3bdc90f4c7b4abe523c656963cfab03 | p@chr17:72823919..72823924, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_d3bdc90f4c7b4abe523c656963cfab03 | p5@C10orf105 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_d3bdc90f4c7b4abe523c656963cfab03 | p@chr7:124391226..124391235, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_d3bdc90f4c7b4abe523c656963cfab03 | p32@NAV3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_d3bdc90f4c7b4abe523c656963cfab03 | p5@C10orf105 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_d3bdc90f4c7b4abe523c656963cfab03 | p32@NAV3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_d3bdc90f4c7b4abe523c656963cfab03 | p@chr17:72823919..72823924, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_d3bdc90f4c7b4abe523c656963cfab03 | p@chr8:42037488..42037504, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_d3bdc90f4c7b4abe523c656963cfab03 | p@chr8:42037488..42037504, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_047328338c756e808a98ca09885fdd3c | p@chr6:163681762..163681767, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_047328338c756e808a98ca09885fdd3c | p16@FAM13C |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_047328338c756e808a98ca09885fdd3c | p16@FAM13C |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_047328338c756e808a98ca09885fdd3c | p24@ARHGAP21 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_047328338c756e808a98ca09885fdd3c | p@chr6:163681762..163681767, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_047328338c756e808a98ca09885fdd3c | p24@ARHGAP21 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr4:174293011..174293022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr8:101522298..101522305, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:645709..645712,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p15@PDE6B |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p20@PRLR |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr8:101522298..101522305, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p15@CNP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr7:129015806..129015815, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p20@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p26@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr7:129012882..129012891, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr7:129015806..129015815, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p26@PRLR |
| 4.66e-66 | FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p15@CNP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr7:129012882..129012891, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr4:174293011..174293022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:645709..645712,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p15@PDE6B |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr13:99135698..99135706, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr13:99135698..99135706, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr14:91199850..91199861, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3 | p@chr14:91199850..91199861, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_eb21a17db8d96a435e813d686cc576b1 | p2@LOC154449 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_eb21a17db8d96a435e813d686cc576b1 | p2@LOC154449 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_9ee1ecc3a6fb315e197d9c1563a5da22 | p6@CYP4F3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_9ee1ecc3a6fb315e197d9c1563a5da22 | p@chrX:103031196..103031205, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_9ee1ecc3a6fb315e197d9c1563a5da22 | p@chr7:30202318..30202329, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_9ee1ecc3a6fb315e197d9c1563a5da22 | p6@CYP4F3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_9ee1ecc3a6fb315e197d9c1563a5da22 | p8@JAM3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_9ee1ecc3a6fb315e197d9c1563a5da22 | p@chr4:74005833..74005844, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_9ee1ecc3a6fb315e197d9c1563a5da22 | p8@JAM3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_9ee1ecc3a6fb315e197d9c1563a5da22 | p@chr7:30202318..30202329, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_9ee1ecc3a6fb315e197d9c1563a5da22 | p@chr4:74005833..74005844, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_9ee1ecc3a6fb315e197d9c1563a5da22 | p@chr10:7454514..7454525, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_9ee1ecc3a6fb315e197d9c1563a5da22 | p@chr10:7454514..7454525, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_9ee1ecc3a6fb315e197d9c1563a5da22 | p@chrX:103031196..103031205, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_9ee1ecc3a6fb315e197d9c1563a5da22 | p31@CKAP4 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_9ee1ecc3a6fb315e197d9c1563a5da22 | p31@CKAP4 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_94cbe0d6a6d00f2da6b1c81274ef0854 | p8@TRIM59 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_94cbe0d6a6d00f2da6b1c81274ef0854 | p@chr6:164364681..164364684, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_94cbe0d6a6d00f2da6b1c81274ef0854 | p@chr9:20927844..20927855, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_94cbe0d6a6d00f2da6b1c81274ef0854 | p@chr9:20927844..20927855, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_94cbe0d6a6d00f2da6b1c81274ef0854 | p@chr17:36726052..36726061, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_94cbe0d6a6d00f2da6b1c81274ef0854 | p@chr17:36726052..36726061, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_94cbe0d6a6d00f2da6b1c81274ef0854 | p@chr11:45922629..45922637, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_94cbe0d6a6d00f2da6b1c81274ef0854 | p@chr11:45922629..45922637, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_94cbe0d6a6d00f2da6b1c81274ef0854 | p@chr6:164364681..164364684, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_94cbe0d6a6d00f2da6b1c81274ef0854 | p8@TRIM59 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_71d5f2000bad4bae98d04d5bfb3e8524 | p8@CARNS1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p10@PTPN3 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_71d5f2000bad4bae98d04d5bfb3e8524 | p13@TTLL4 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p@chr11:117585539..117585541, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p10@PTPN3 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_71d5f2000bad4bae98d04d5bfb3e8524 | p8@CARNS1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p@chr11:117585539..117585541, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p6@C6orf192 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_71d5f2000bad4bae98d04d5bfb3e8524 | p13@TTLL4 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p38@ANKS1B |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p38@ANKS1B |
| 6.58e-50 | FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_71d5f2000bad4bae98d04d5bfb3e8524 | p@chr4:7412700..7412704, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p6@C6orf192 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p@chr3:190578500..190578506, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_71d5f2000bad4bae98d04d5bfb3e8524 | p@chr4:7412700..7412704, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p@chr3:10706167..10706179, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_71d5f2000bad4bae98d04d5bfb3e8524 | p8@IL1RAPL1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_71d5f2000bad4bae98d04d5bfb3e8524 | p@chr3:190578500..190578506, - |
