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Difference between revisions of "UBERON:0002495"

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|has_quality=
 
|has_quality=
 
|id=UBERON:0002495
 
|id=UBERON:0002495
|is_a=UBERON:0001474
+
|is_a=UBERON:0001474  
 
|is_obsolete=
 
|is_obsolete=
 
|located_in=
 
|located_in=
 
|name=long bone
 
|name=long bone
|namespace=
+
|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=UBERON:0002091
 
|part_of=UBERON:0002091

Latest revision as of 08:33, 12 September 2014

Name:long bone
Namespace:FANTOM
Definition:"Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO]." [VSAO:wd, Wikipedia:Long_bone]
Xrefs:
links:

BTO:0004256
FMA:7474
galen:LongBone
MA:0002802
ncithesaurus:Long_Bone
OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA

SCTID:332709000
Comments:Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251]
Alt_id: UBERON:MA_0002802-FMA_7474
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001474(bone element)
part_of:UBERON:0002091(appendicular skeleton)



Children

is a:UBERON:0003606 (limb long bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002495 (long bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_acebd46883c9d44463c5dacaa72d7a98p26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_acebd46883c9d44463c5dacaa72d7a98p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_d022df6d1d793061171e865febccf2fap@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_d022df6d1d793061171e865febccf2fap@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_d022df6d1d793061171e865febccf2fap@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_d022df6d1d793061171e865febccf2fap@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_d022df6d1d793061171e865febccf2fap@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_d022df6d1d793061171e865febccf2fap@chr8:75097542..75097549, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_f2c0d0a586dd08dee0ae9fd1a8508c97p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_f2c0d0a586dd08dee0ae9fd1a8508c97p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_9a109889d33edbdc4a67fa4ce3546449p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_9a109889d33edbdc4a67fa4ce3546449p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_eb4564512297922faeee528703b6a5a9p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_eb4564512297922faeee528703b6a5a9p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_eb4564512297922faeee528703b6a5a9p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_eb4564512297922faeee528703b6a5a9p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_eb4564512297922faeee528703b6a5a9p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_eb4564512297922faeee528703b6a5a9p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_eb4564512297922faeee528703b6a5a9p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_eb4564512297922faeee528703b6a5a9p@chr11:67063327..67063335, +
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_c55e3fa6e653d8ef285cdc5faf09e852p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_c55e3fa6e653d8ef285cdc5faf09e852p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_6e921f6e360495d33d9c25d659c5ce14p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_6e921f6e360495d33d9c25d659c5ce14p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_fc3321de3e20c908d1f1f2e2d98c85dep3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_fc3321de3e20c908d1f1f2e2d98c85dep3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_1cad8225af33b629e54ff96282993596p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_1cad8225af33b629e54ff96282993596p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_ebc8a29cabd704b904c0fcfcb41069e3p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_ebc8a29cabd704b904c0fcfcb41069e3p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_a8ba166c4c35599f891211f985923a32p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_a8ba166c4c35599f891211f985923a32p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_f5233def2050c869025985f8ddaafe68p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_f5233def2050c869025985f8ddaafe68p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_34212ec7fd839f86b67b7a7d07e2be3ep@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_34212ec7fd839f86b67b7a7d07e2be3ep2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_34212ec7fd839f86b67b7a7d07e2be3ep2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_34212ec7fd839f86b67b7a7d07e2be3ep@chr1:166815111..166815121, -
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_3a59b1e0c091d20bf18657866c3fbf7ep@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_3a59b1e0c091d20bf18657866c3fbf7ep@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_3a59b1e0c091d20bf18657866c3fbf7ep4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_3a59b1e0c091d20bf18657866c3fbf7ep4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_765d35828b1149444e6d1b78bbaafda4p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_765d35828b1149444e6d1b78bbaafda4p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_84a9e4181692664f3077c0738fe93092p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_84a9e4181692664f3077c0738fe93092p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_84a9e4181692664f3077c0738fe93092p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_84a9e4181692664f3077c0738fe93092p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_6236360f0ffa96e36c4a04de94024f73p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_6236360f0ffa96e36c4a04de94024f73p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_4254a165f45fd38c3442f9f78de8bfe4p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_4254a165f45fd38c3442f9f78de8bfe4p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_4254a165f45fd38c3442f9f78de8bfe4p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_4254a165f45fd38c3442f9f78de8bfe4p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_9e8ec6931d1316c1de653c7784f62bb3p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_9e8ec6931d1316c1de653c7784f62bb3p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_6e324731079b1c4e5d82df6fdbb34620p2@Myoz3
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_6e324731079b1c4e5d82df6fdbb34620p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_746356eb8dd806aff753fc5e1976a631p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_746356eb8dd806aff753fc5e1976a631p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_9e4d6c51fdfbbaef9cc3a29ef10c9e57p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_9e4d6c51fdfbbaef9cc3a29ef10c9e57p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_4fbfa27d29e9060ab62340d88dcc7adep1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_4fbfa27d29e9060ab62340d88dcc7adep@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_4fbfa27d29e9060ab62340d88dcc7adep@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_4fbfa27d29e9060ab62340d88dcc7adep1@Msmp
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_cf5502913cbd43952f4abbbd44fa3767p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_cf5502913cbd43952f4abbbd44fa3767p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_cf5502913cbd43952f4abbbd44fa3767p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_cf5502913cbd43952f4abbbd44fa3767p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_737d51f35dec23bb5f828b9f1f5cdd28p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_737d51f35dec23bb5f828b9f1f5cdd28p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_9ce852a7a2c5ba28c18f6eabb99c1b03p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_9ce852a7a2c5ba28c18f6eabb99c1b03p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_2ee94cb9e5abc041ba569889426618c8p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_2ee94cb9e5abc041ba569889426618c8p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_c06a9765ee06a3b3a2c52a19619038ddp1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_c06a9765ee06a3b3a2c52a19619038ddp1@Siglec15
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_05bb27fb2dd4aeaffcb1d77283027c5ap6@Atp2a1
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_05bb27fb2dd4aeaffcb1d77283027c5ap6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_dba25351d1ed70891c70538721e83fbap7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_dba25351d1ed70891c70538721e83fbap7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_baf81bc4034f5f381fed84dd9045eff5p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_baf81bc4034f5f381fed84dd9045eff5p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_baf81bc4034f5f381fed84dd9045eff5p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_baf81bc4034f5f381fed84dd9045eff5p@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_d5b5d24423b577681d138278593d5e17p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_d5b5d24423b577681d138278593d5e17p4@Sgca
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_ec4bedf0d2eae426bd52c52bce41b8f4p1@Mepe
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_ec4bedf0d2eae426bd52c52bce41b8f4p1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_6a05e37cbcbfbf5812960547e37eb9efp@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_6a05e37cbcbfbf5812960547e37eb9efp2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_6a05e37cbcbfbf5812960547e37eb9efp2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_6a05e37cbcbfbf5812960547e37eb9efp@chr12:81581216..81581231, +
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_9d23240a89b9f7698ee6568228ea0097p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_9d23240a89b9f7698ee6568228ea0097p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_9d23240a89b9f7698ee6568228ea0097p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_9d23240a89b9f7698ee6568228ea0097p5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_7fd3b965322a0b325af9d9fcd0b04aaap@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_7fd3b965322a0b325af9d9fcd0b04aaap2@Siglec15