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Difference between revisions of "UBERON:0002757"

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|located_in=
 
|located_in=
 
|name=regional part of epithalamus
 
|name=regional part of epithalamus
|namespace=
+
|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=UBERON:0001899
 
|part_of=UBERON:0001899

Latest revision as of 08:34, 12 September 2014

Name:regional part of epithalamus
Namespace:FANTOM
Definition:"A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62013

NIF_GrossAnatomy:birnlex_1607
Synonyms: "anatomical structure of brain of epithalamus" EXACT [OBOL:automatic]
"biological structure of brain of epithalamus" EXACT [OBOL:automatic]
"brain anatomical structure of epithalamus" EXACT [OBOL:automatic]
"brain biological structure of epithalamus" EXACT [OBOL:automatic]
"epithalamus anatomical structure of brain" EXACT [OBOL:automatic]
"epithalamus biological structure of brain" EXACT [OBOL:automatic]
"epithalamus brain anatomical structure" EXACT [OBOL:automatic]
"epithalamus brain biological structure" EXACT [OBOL:automatic]
"epithalamus neuraxis segment" EXACT [OBOL:automatic]
"epithalamus regional part of brain" EXACT [OBOL:automatic]
"epithalamus segment" EXACT [FMA:62013]
"epithalamus segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of epithalamus" EXACT [OBOL:automatic]
"regional part of brain of epithalamus" EXACT [OBOL:automatic]
"segment of brain of epithalamus" EXACT [OBOL:automatic]
"segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002784(regional part of diencephalon)
part_of:UBERON:0001899(epithalamus)



Children

is a:UBERON:0001905 (pineal body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002757 (regional part of epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr3:128170725..128170735,+#_9fff67266e304a13f2133c4d8e21ddbep@chr3:128170725..128170735, +
3.29e-195FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135472861..135472868, -
3.29e-195FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504353..135504365, -
3.29e-195FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:55422565..55422604, +
3.29e-195FFCP PHASE1:Hg19::chr17:74463567..74463574,+#_9fff67266e304a13f2133c4d8e21ddbep4@AANAT
3.29e-195FFCP PHASE2:Hg19::chr5:119799576..119799585,+#_9fff67266e304a13f2133c4d8e21ddbep10@PRR16
3.29e-195FFCP PHASE2:Hg19::chr12:121088132..121088135,+#_9fff67266e304a13f2133c4d8e21ddbep15@CABP1
3.29e-195FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_9fff67266e304a13f2133c4d8e21ddbep28@KCNIP4
3.29e-195FFCP PHASE2:Hg19::chr11:18040537..18040547,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18040537..18040547, -
3.29e-195FFCP PHASE2:Hg19::chr8:87755845..87755852,-#_9fff67266e304a13f2133c4d8e21ddbep6@CNGB3
3.29e-195FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473063..135473075, -
3.29e-195FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_9fff67266e304a13f2133c4d8e21ddbep4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr11:18053180..18053192,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18053180..18053192, -
3.29e-195FFCP PHASE1:Hg19::chr2:17065916..17065929,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17065916..17065929, +
3.29e-195FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:55470964..55470974, -
3.29e-195FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57975398..57975401, +
3.29e-195FFCP PHASE1:Hg19::chr17:55484129..55484139,+#_9fff67266e304a13f2133c4d8e21ddbep@chr17:55484129..55484139, +
3.29e-195FFCP PHASE2:Hg19::chr13:52650486..52650491,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:52650486..52650491, -
3.29e-195FFCP PHASE1:Hg19::chr8:116085391..116085419,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:116085391..116085419, +
3.29e-195FFCP PHASE1:Hg19::chr16:51808960..51808964,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:51808960..51808964, -
3.29e-195FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_9fff67266e304a13f2133c4d8e21ddbep3@WNT16
3.29e-195FFCP PHASE2:Hg19::chr14:49512240..49512248,-#_9fff67266e304a13f2133c4d8e21ddbep@chr14:49512240..49512248, -
3.29e-195FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_9fff67266e304a13f2133c4d8e21ddbep6@FRMPD1
3.29e-195FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066392..18066397, -
3.29e-195FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_9fff67266e304a13f2133c4d8e21ddbep@chr10:80984180..80984190, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473748..135473753,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473748..135473753, -
3.29e-195FFCP PHASE1:Hg19::chr9:88661694..88661709,-#_9fff67266e304a13f2133c4d8e21ddbep@chr9:88661694..88661709, -
3.29e-195FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18067951..18067954, -
3.29e-195FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:47662877..47662880, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473205..135473218,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473205..135473218, -
3.29e-195FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_9fff67266e304a13f2133c4d8e21ddbep35@DMD
3.29e-195FFCP PHASE2:Hg19::chrX:33146501..33146521,-#_9fff67266e304a13f2133c4d8e21ddbep32@DMD
3.29e-195FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_9fff67266e304a13f2133c4d8e21ddbep3@NEUROG1
3.29e-195FFCP PHASE1:Hg19::chr2:216447404..216447411,-#_9fff67266e304a13f2133c4d8e21ddbep1@ENST00000457625
3.29e-195FFCP PHASE1:Hg19::chr16:51174216..51174239,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:51174216..51174239, -
3.29e-195FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:15134610..15134617, +
3.29e-195FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_9fff67266e304a13f2133c4d8e21ddbep8@SLC5A7
3.29e-195FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:55470984..55471009, -
3.29e-195FFCP PHASE1:Hg19::chr8:135515939..135515941,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135515939..135515941, +
3.29e-195FFCP PHASE2:Hg19::chr18:56963093..56963105,-#_9fff67266e304a13f2133c4d8e21ddbep@chr18:56963093..56963105, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18041244..18041266, -
3.29e-195FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_9fff67266e304a13f2133c4d8e21ddbep9@PRR16
3.29e-195FFCP PHASE1:Hg19::chr1:57914399..57914402,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57914399..57914402, +
3.29e-195FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066399..18066411, -
3.29e-195FFCP PHASE2:Hg19::chr4:20985690..20985695,-#_9fff67266e304a13f2133c4d8e21ddbep38@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135474173..135474185, -
3.29e-195FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:100942376..100942381, -
3.29e-195FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_9fff67266e304a13f2133c4d8e21ddbep4@AANAT
3.29e-195FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:87751918..87751928, -
3.29e-195FFCP PHASE2:Hg19::chr7:9178561..9178568,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9178561..9178568, -
3.29e-195FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:52650486..52650491, -
3.29e-195FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:17930871..17930877, -
3.29e-195FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57907030..57907050, +
3.29e-195FFCP PHASE2:Hg19::chr2:44903714..44903719,+#_9fff67266e304a13f2133c4d8e21ddbep8@CAMKMT
3.29e-195FFCP PHASE2:Hg19::chr17:55484129..55484139,+#_9fff67266e304a13f2133c4d8e21ddbep@chr17:55484129..55484139, +
3.29e-195FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_9fff67266e304a13f2133c4d8e21ddbep@chr6:33087873..33087886, -
3.29e-195FFCP PHASE2:Hg19::chr14:55282406..55282415,-#_9fff67266e304a13f2133c4d8e21ddbep@chr14:55282406..55282415, -
3.29e-195FFCP PHASE2:Hg19::chr2:17064630..17064651,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17064630..17064651, +
3.29e-195FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_9fff67266e304a13f2133c4d8e21ddbep11@CABP1
3.29e-195FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18041194..18041197, -
3.29e-195FFCP PHASE2:Hg19::chr11:18067904..18067908,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18067904..18067908, -
3.29e-195FFCP PHASE2:Hg19::chr7:9228468..9228494,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9228468..9228494, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473472..135473477, -
3.29e-195FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860786..99860791, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952462..54952471,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952462..54952471, -
3.29e-195FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_9fff67266e304a13f2133c4d8e21ddbep2@PLCL2-AS1
3.29e-195FFCP PHASE1:Hg19::chr5:136699666..136699696,-#_9fff67266e304a13f2133c4d8e21ddbep@chr5:136699666..136699696, -
3.29e-195FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_9fff67266e304a13f2133c4d8e21ddbep@chr18:56963107..56963117, -
3.29e-195FFCP PHASE1:Hg19::chr5:7338484..7338504,-#_9fff67266e304a13f2133c4d8e21ddbep@chr5:7338484..7338504, -
3.29e-195FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952412..54952416, -
3.29e-195FFCP PHASE1:Hg19::chr1:45782019..45782028,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:45782019..45782028, +
3.29e-195FFCP PHASE1:Hg19::chr1:240177602..240177607,+#_9fff67266e304a13f2133c4d8e21ddbep17@FMN2
3.29e-195FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:1210506..1210513, -
3.29e-195FFCP PHASE2:Hg19::chr7:9194488..9194491,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9194488..9194491, -
3.29e-195FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_9fff67266e304a13f2133c4d8e21ddbep7@TULP4
3.29e-195FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_9fff67266e304a13f2133c4d8e21ddbep@chr14:49512240..49512248, -
3.29e-195FFCP PHASE2:Hg19::chr8:135504405..135504410,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504405..135504410, -
3.29e-195FFCP PHASE1:Hg19::chr2:17185712..17185735,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17185712..17185735, +
3.29e-195FFCP PHASE1:Hg19::chr12:55422858..55422866,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:55422858..55422866, +
3.29e-195FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_9fff67266e304a13f2133c4d8e21ddbep5@AANAT
3.29e-195FFCP PHASE1:Hg19::chr7:9186866..9186885,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9186866..9186885, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504314..135504320, -
3.29e-195FFCP PHASE1:Hg19::chr3:101038595..101038604,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:101038595..101038604, -
3.29e-195FFCP PHASE2:Hg19::chr13:68306577..68306607,+#_9fff67266e304a13f2133c4d8e21ddbep@chr13:68306577..68306607, +
3.29e-195FFCP PHASE1:Hg19::chr7:9782610..9782613,+#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9782610..9782613, +
3.29e-195FFCP PHASE1:Hg19::chr2:108602341..108602352,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:108602341..108602352, +
3.29e-195FFCP PHASE2:Hg19::chr11:72297712..72297715,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:72297712..72297715, -
3.29e-195FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18063669..18063678, -
3.29e-195FFCP PHASE1:Hg19::chr2:17075761..17075773,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17075761..17075773, +
3.29e-195FFCP PHASE2:Hg19::chr7:32468385..32468392,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:32468385..32468392, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066319..18066337,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066319..18066337, -
3.29e-195FFCP PHASE1:Hg19::chr15:55470984..55471009,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:55470984..55471009, -
3.29e-195FFCP PHASE2:Hg19::chr2:48705144..48705150,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:48705144..48705150, +
3.29e-195FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473983..135473986, -
3.29e-195FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:52650530..52650533, -
3.29e-195FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:60826120..60826127, +
3.29e-195FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:116127086..116127103, +
3.29e-195FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:47662877..47662880, -
3.29e-195FFCP PHASE1:Hg19::chr4:1188439..1188454,-#_9fff67266e304a13f2133c4d8e21ddbep@chr4:1188439..1188454, -
3.29e-195FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_9fff67266e304a13f2133c4d8e21ddbep22@TUBA1C