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|located_in=
|located_in=
|name=regional part of epithalamus
|name=regional part of epithalamus
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001899
|part_of=UBERON:0001899

Latest revision as of 17:34, 12 September 2014

Name:regional part of epithalamus
Namespace:FANTOM
Definition:"A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62013

NIF_GrossAnatomy:birnlex_1607
Synonyms: "anatomical structure of brain of epithalamus" EXACT [OBOL:automatic]
"biological structure of brain of epithalamus" EXACT [OBOL:automatic]
"brain anatomical structure of epithalamus" EXACT [OBOL:automatic]
"brain biological structure of epithalamus" EXACT [OBOL:automatic]
"epithalamus anatomical structure of brain" EXACT [OBOL:automatic]
"epithalamus biological structure of brain" EXACT [OBOL:automatic]
"epithalamus brain anatomical structure" EXACT [OBOL:automatic]
"epithalamus brain biological structure" EXACT [OBOL:automatic]
"epithalamus neuraxis segment" EXACT [OBOL:automatic]
"epithalamus regional part of brain" EXACT [OBOL:automatic]
"epithalamus segment" EXACT [FMA:62013]
"epithalamus segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of epithalamus" EXACT [OBOL:automatic]
"regional part of brain of epithalamus" EXACT [OBOL:automatic]
"segment of brain of epithalamus" EXACT [OBOL:automatic]
"segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002784(regional part of diencephalon)
part_of:UBERON:0001899(epithalamus)



Children

is a:UBERON:0001905 (pineal body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002757 (regional part of epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr16:51808960..51808964,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:51808960..51808964, -
3.29e-195FFCP PHASE1:Hg19::chr1:99860753..99860764,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860753..99860764, -
3.29e-195FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135474173..135474185, -
3.29e-195FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135521466..135521470, +
3.29e-195FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:55422565..55422604, +
3.29e-195FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18067951..18067954, -
3.29e-195FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_9fff67266e304a13f2133c4d8e21ddbep11@CABP1
3.29e-195FFCP PHASE2:Hg19::chr2:17185958..17185998,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17185958..17185998, +
3.29e-195FFCP PHASE2:Hg19::chr8:135504337..135504342,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504337..135504342, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066392..18066397,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066392..18066397, -
3.29e-195FFCP PHASE2:Hg19::chr3:17085717..17085733,-#_9fff67266e304a13f2133c4d8e21ddbep2@PLCL2-AS1
3.29e-195FFCP PHASE2:Hg19::chr14:55282406..55282415,-#_9fff67266e304a13f2133c4d8e21ddbep@chr14:55282406..55282415, -
3.29e-195FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_9fff67266e304a13f2133c4d8e21ddbep35@DMD
3.29e-195FFCP PHASE2:Hg19::chr16:51174216..51174239,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:51174216..51174239, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473472..135473477, -
3.29e-195FFCP PHASE1:Hg19::chr11:18067959..18067962,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18067959..18067962, -
3.29e-195FFCP PHASE1:Hg19::chr1:57975398..57975401,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57975398..57975401, +
3.29e-195FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:87751931..87751947, -
3.29e-195FFCP PHASE2:Hg19::chr7:9186866..9186885,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9186866..9186885, -
3.29e-195FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:100942645..100942655, -
3.29e-195FFCP PHASE2:Hg19::chr20:44991864..44991887,-#_9fff67266e304a13f2133c4d8e21ddbep10@SLC35C2
3.29e-195FFCP PHASE1:Hg19::chr16:50898038..50898042,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:50898038..50898042, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041194..18041197,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18041194..18041197, -
3.29e-195FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_9fff67266e304a13f2133c4d8e21ddbep@chr18:56963107..56963117, -
3.29e-195FFCP PHASE2:Hg19::chr7:9782610..9782613,+#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9782610..9782613, +
3.29e-195FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:72297717..72297725, -
3.29e-195FFCP PHASE1:Hg19::chr3:54952462..54952471,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952462..54952471, -
3.29e-195FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_9fff67266e304a13f2133c4d8e21ddbep1@BC014398
3.29e-195FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9178350..9178369, -
3.29e-195FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:47662877..47662880, -
3.29e-195FFCP PHASE1:Hg19::chr2:17185712..17185735,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17185712..17185735, +
3.29e-195FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860753..99860764, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504314..135504320, -
3.29e-195FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_9fff67266e304a13f2133c4d8e21ddbep4@ENST00000439998
3.29e-195FFCP PHASE1:Hg19::chr14:57197193..57197194,-#_9fff67266e304a13f2133c4d8e21ddbep1@ENST00000554597
3.29e-195FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:15134610..15134617, +
3.29e-195FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:55470984..55471009, -
3.29e-195FFCP PHASE2:Hg19::chr13:68306577..68306607,+#_9fff67266e304a13f2133c4d8e21ddbep@chr13:68306577..68306607, +
3.29e-195FFCP PHASE2:Hg19::chr4:20985967..20985972,-#_9fff67266e304a13f2133c4d8e21ddbep28@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr16:18066345..18066365,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066345..18066365, -
3.29e-195FFCP PHASE1:Hg19::chr11:18041199..18041200,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18041199..18041200, -
3.29e-195FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_9fff67266e304a13f2133c4d8e21ddbep32@DMD
3.29e-195FFCP PHASE1:Hg19::chr2:17075761..17075773,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17075761..17075773, +
3.29e-195FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473983..135473986, -
3.29e-195FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_9fff67266e304a13f2133c4d8e21ddbep@chr9:37692930..37692936, +
3.29e-195FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135515989..135515991, +
3.29e-195FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:87751918..87751928, -
3.29e-195FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:116127086..116127103, +
3.29e-195FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:120842768..120842790, -
3.29e-195FFCP PHASE1:Hg19::chr5:135732714..135732721,-#_9fff67266e304a13f2133c4d8e21ddbep2@ENST00000514282
3.29e-195FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:52650530..52650533, -
3.29e-195FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:100942376..100942381, -
3.29e-195FFCP PHASE1:Hg19::chr16:51175701..51175708,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:51175701..51175708, -
3.29e-195FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_9fff67266e304a13f2133c4d8e21ddbep22@TUBA1C
3.29e-195FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18063669..18063678, -
3.29e-195FFCP PHASE1:Hg19::chr5:119799576..119799585,+#_9fff67266e304a13f2133c4d8e21ddbep10@PRR16
3.29e-195FFCP PHASE2:Hg19::chr2:17141934..17141935,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17141934..17141935, +
3.29e-195FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57975398..57975401, +
3.29e-195FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr12:6954834..6954841,+#_9fff67266e304a13f2133c4d8e21ddbep9@GNB3
3.29e-195FFCP PHASE1:Hg19::chr5:136328601..136328607,-#_9fff67266e304a13f2133c4d8e21ddbep25@SPOCK1
3.29e-195FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952412..54952416, -
3.29e-195FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:129084265..129084288, -
3.29e-195FFCP PHASE2:Hg19::chr8:99033409..99033415,+#_9fff67266e304a13f2133c4d8e21ddbep16@MATN2
3.29e-195FFCP PHASE1:Hg19::chr4:20985690..20985695,-#_9fff67266e304a13f2133c4d8e21ddbep38@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_9fff67266e304a13f2133c4d8e21ddbep@chr11:84530787..84530803, +
3.29e-195FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17040158..17040170, +
3.29e-195FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_9fff67266e304a13f2133c4d8e21ddbep4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr11:18063707..18063720,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18063707..18063720, -
3.29e-195FFCP PHASE1:Hg19::chr1:57907030..57907050,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57907030..57907050, +
3.29e-195FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9178350..9178369, -
3.29e-195FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_9fff67266e304a13f2133c4d8e21ddbep6@FRMPD1
3.29e-195FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135515957..135515964, +
3.29e-195FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_9fff67266e304a13f2133c4d8e21ddbep4@ENST00000439998
3.29e-195FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_9fff67266e304a13f2133c4d8e21ddbep9@LOC100507050
3.29e-195FFCP PHASE1:Hg19::chr2:216447425..216447432,-#_9fff67266e304a13f2133c4d8e21ddbep2@ENST00000457625
3.29e-195FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9782665..9782674, +
3.29e-195FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_9fff67266e304a13f2133c4d8e21ddbep@chr3:139938385..139938390, +
3.29e-195FFCP PHASE1:Hg19::chr9:88661694..88661709,-#_9fff67266e304a13f2133c4d8e21ddbep@chr9:88661694..88661709, -
3.29e-195FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_9fff67266e304a13f2133c4d8e21ddbep11@SRRM3
3.29e-195FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18067959..18067962, -
3.29e-195FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_9fff67266e304a13f2133c4d8e21ddbep8@SLC5A7
3.29e-195FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:204667243..204667248, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860786..99860791,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860786..99860791, -
3.29e-195FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135499228..135499260, -
3.29e-195FFCP PHASE2:Hg19::chr8:135522475..135522486,-#_9fff67266e304a13f2133c4d8e21ddbep16@ZFAT
3.29e-195FFCP PHASE1:Hg19::chr12:55422858..55422866,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:55422858..55422866, +
3.29e-195FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_9fff67266e304a13f2133c4d8e21ddbep@chr2:4224059..4224062, -
3.29e-195FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:120842768..120842790, -
3.29e-195FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:56628524..56628547, -
3.29e-195FFCP PHASE1:Hg19::chr3:101038595..101038604,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:101038595..101038604, -
3.29e-195FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:129084265..129084288, -
3.29e-195FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_9fff67266e304a13f2133c4d8e21ddbep15@CABP1
3.29e-195FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18039672..18039678, -
3.29e-195FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_9fff67266e304a13f2133c4d8e21ddbep4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473876..135473885, -
3.29e-195FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504353..135504365, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066399..18066411, -
3.29e-195FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_9fff67266e304a13f2133c4d8e21ddbep@chr9:137539895..137539904, +

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