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{{UBERON
 
{{UBERON
|id=UBERON:0002780
+
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996
|name=regional part of forebrain
+
|anatomical_img_id=FMA:61996
|namespace=
 
|def="A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic]
 
|xref=FMA:61996;;NIF_GrossAnatomy:birnlex_1677
 
|is_a=UBERON:0002616
 
|synonym="anatomical structure of brain of forebrain" EXACT [OBOL:automatic];;"biological structure of brain of forebrain" EXACT [OBOL:automatic];;"brain anatomical structure of forebrain" EXACT [OBOL:automatic];;"brain biological structure of forebrain" EXACT [OBOL:automatic];;"forebrain anatomical structure of brain" EXACT [OBOL:automatic];;"forebrain biological structure of brain" EXACT [OBOL:automatic];;"forebrain brain anatomical structure" EXACT [OBOL:automatic];;"forebrain brain biological structure" EXACT [OBOL:automatic];;"forebrain neuraxis segment" EXACT [OBOL:automatic];;"forebrain regional part of brain" EXACT [OBOL:automatic];;"forebrain segment" EXACT [FMA:61996];;"forebrain segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of forebrain" EXACT [OBOL:automatic];;"regional part of brain of forebrain" EXACT [OBOL:automatic];;"segment of brain of forebrain" EXACT [OBOL:automatic];;"segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677]
 
 
|comment=
 
|comment=
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0002780
 +
|is_a=UBERON:0002616
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=
+
|name=regional part of forebrain
 +
|namespace=FANTOM
 +
|obo_creation_date=
 +
|part_of=UBERON:0001890
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="anatomical structure of brain of forebrain" EXACT [OBOL:automatic];;"biological structure of brain of forebrain" EXACT [OBOL:automatic];;"brain anatomical structure of forebrain" EXACT [OBOL:automatic];;"brain biological structure of forebrain" EXACT [OBOL:automatic];;"forebrain anatomical structure of brain" EXACT [OBOL:automatic];;"forebrain biological structure of brain" EXACT [OBOL:automatic];;"forebrain brain anatomical structure" EXACT [OBOL:automatic];;"forebrain brain biological structure" EXACT [OBOL:automatic];;"forebrain neuraxis segment" EXACT [OBOL:automatic];;"forebrain regional part of brain" EXACT [OBOL:automatic];;"forebrain segment" EXACT [FMA:61996];;"forebrain segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of forebrain" EXACT [OBOL:automatic];;"regional part of brain of forebrain" EXACT [OBOL:automatic];;"segment of brain of forebrain" EXACT [OBOL:automatic];;"segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677]
 +
|union_of=
 +
|xref=FMA:61996;;NIF_GrossAnatomy:birnlex_1677
 
}}
 
}}

Latest revision as of 08:34, 12 September 2014

Name:regional part of forebrain
Namespace:FANTOM
Definition:"A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:61996

NIF_GrossAnatomy:birnlex_1677
Synonyms: "anatomical structure of brain of forebrain" EXACT [OBOL:automatic]
"biological structure of brain of forebrain" EXACT [OBOL:automatic]
"brain anatomical structure of forebrain" EXACT [OBOL:automatic]
"brain biological structure of forebrain" EXACT [OBOL:automatic]
"forebrain anatomical structure of brain" EXACT [OBOL:automatic]
"forebrain biological structure of brain" EXACT [OBOL:automatic]
"forebrain brain anatomical structure" EXACT [OBOL:automatic]
"forebrain brain biological structure" EXACT [OBOL:automatic]
"forebrain neuraxis segment" EXACT [OBOL:automatic]
"forebrain regional part of brain" EXACT [OBOL:automatic]
"forebrain segment" EXACT [FMA:61996]
"forebrain segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of forebrain" EXACT [OBOL:automatic]
"regional part of brain of forebrain" EXACT [OBOL:automatic]
"segment of brain of forebrain" EXACT [OBOL:automatic]
"segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002616(regional part of brain)
part_of:UBERON:0001890(forebrain)



Children

is a:UBERON:0001893 (telencephalon),UBERON:0001894 (diencephalon),UBERON:0002743 (basal forebrain),UBERON:0002784 (regional part of diencephalon),UBERON:0002791 (regional part of telencephalon),UBERON:0006098 (basal nuclear complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002780 (regional part of forebrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
6.11e-141FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_bb3e0c092361a6f46c4ccb79166db5fcp@chr5:89977201..89977236, +
6.11e-141FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_bb3e0c092361a6f46c4ccb79166db5fcp@chr5:89977201..89977236, +
2.38e-133FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_53cefab13af2f92cff1404dfdc5e41dfp5@ST8SIA3
2.38e-133FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_53cefab13af2f92cff1404dfdc5e41dfp5@ST8SIA3
6.8e-130FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_883e41aecb00c17a9b96d25ae9b93906p5@PHACTR1
6.8e-130FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_883e41aecb00c17a9b96d25ae9b93906p5@PHACTR1
2.27e-128FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_0c71e1f193d43aa5bccc6a9581de8df0p3@PHACTR1
2.27e-128FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_0c71e1f193d43aa5bccc6a9581de8df0p3@PHACTR1
6.39e-128FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_9a941ee9ade52fa052ca10ae271dd45ep6@PSD
6.39e-128FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_9a941ee9ade52fa052ca10ae271dd45ep6@PSD
7.77e-125FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_851641970241f91cf0c875a8bddfa4eap@chr20:61806320..61806344, +
7.77e-125FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_851641970241f91cf0c875a8bddfa4eap@chr20:61806320..61806344, +
3.82e-123FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_616106d5fdd8b60e35031dfb84cc2ff7p2@FXYD7
3.82e-123FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_616106d5fdd8b60e35031dfb84cc2ff7p2@FXYD7
1.09e-121FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_ab66587f5788ebf1edd98f14aad9c019p1@NR2E1
1.09e-121FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_ab66587f5788ebf1edd98f14aad9c019p1@NR2E1
2.87e-118FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_b39b53c139ac68ca4e9f8870c59bc742p5@OPCML
2.87e-118FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_b39b53c139ac68ca4e9f8870c59bc742p5@OPCML
7.25e-118FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_48464271d13bde94561655f30f3be36fp4@DPP6
7.25e-118FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_48464271d13bde94561655f30f3be36fp4@DPP6
8.87e-118FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_12e01344722bff7e2877cde722b37fe8p9@GPM6B
8.87e-118FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_12e01344722bff7e2877cde722b37fe8p9@GPM6B
1.66e-117FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_88f279f0ad5106cf0ca7370aa1ae410bp@chr4:6514469..6514483, -
1.66e-117FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_88f279f0ad5106cf0ca7370aa1ae410bp@chr4:6514469..6514483, -
2.75e-117FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_678b92b378c95eab565dbf3394aa4f51p3@GRIN2B
2.75e-117FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_678b92b378c95eab565dbf3394aa4f51p3@GRIN2B
2.82e-116FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_4d66c9bb26e8fad3796a1ae60e6674eap4@PHACTR1
2.82e-116FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_4d66c9bb26e8fad3796a1ae60e6674eap4@PHACTR1
2.93e-116FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_823d06c094038e6be173f926016016d4p8@RIMS2
2.93e-116FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_823d06c094038e6be173f926016016d4p8@RIMS2
5.58e-116FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_d22c024a1ce73582599674a9f4528864p8@LRRC7
5.58e-116FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_d22c024a1ce73582599674a9f4528864p8@LRRC7
6.52e-116FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_290f0afc897587a80bac33f78b05b5cep4@DLGAP3
6.52e-116FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_290f0afc897587a80bac33f78b05b5cep4@DLGAP3
6.61e-116FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_e5920efc645524d3f78e1a5f36f20beep8@PHACTR1
6.61e-116FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_e5920efc645524d3f78e1a5f36f20beep8@PHACTR1
5.28e-115FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_bcfd0a7ecce05c81816c747e238dc95fp3@DOCK4
5.28e-115FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_bcfd0a7ecce05c81816c747e238dc95fp3@DOCK4
5.97e-115FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_fb9ebde650c940d62f668105733ef31bp3@GPR98
5.97e-115FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_fb9ebde650c940d62f668105733ef31bp3@GPR98
1.02e-114FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_397eabc18ca05b1e82c18da5a93caed3p2@DLGAP3
1.02e-114FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_397eabc18ca05b1e82c18da5a93caed3p2@DLGAP3
1.06e-114FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_c19b051e04680c6a47cb68284f33c6eap5@MKL2
1.06e-114FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_c19b051e04680c6a47cb68284f33c6eap5@MKL2
8.42e-114FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_f338abc3b73f5d127b940d7d630c9187p1@uc003ppd.1
8.42e-114FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_f338abc3b73f5d127b940d7d630c9187p1@uc003ppd.1
3.53e-113FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_d8041a0483dc3995a8fb6fb1f5ddebfap@chr1:70035018..70035044, +
3.53e-113FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_d8041a0483dc3995a8fb6fb1f5ddebfap@chr1:70035018..70035044, +
5.22e-113FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_67c3fb504f4882c93a6063da0aae4af7p6@GABRA2
5.22e-113FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_67c3fb504f4882c93a6063da0aae4af7p6@GABRA2
5.23e-113FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_f943cb9db6e815035326f93462dee195p6@CIT
5.23e-113FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_f943cb9db6e815035326f93462dee195p6@CIT
1.08e-112FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_54918fdd883d081b950aac0927c0bb55p2@LMTK3
1.08e-112FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_54918fdd883d081b950aac0927c0bb55p2@LMTK3
1.26e-112FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_2063de52055c969cade52f4241584e4fp10@GPM6B
1.26e-112FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_2063de52055c969cade52f4241584e4fp10@GPM6B
1.39e-112FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_427023e8222ac5b0c68a0ac0446b57cfp@chr5:80255907..80255942, +
1.39e-112FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_427023e8222ac5b0c68a0ac0446b57cfp@chr5:80255907..80255942, +
1.42e-112FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_1ae437e3a9269f6501f55b120b40028dp@chr17:61194578..61194599, +
1.42e-112FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_1ae437e3a9269f6501f55b120b40028dp@chr17:61194578..61194599, +
1.66e-112FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_7a13259503c4fbf4fb9984e4b4148ca8p@chr5:89977181..89977199, +
1.66e-112FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_7a13259503c4fbf4fb9984e4b4148ca8p@chr5:89977181..89977199, +
6.89e-112FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_eb1ba38ce5e5de2ee418777742748d0cp1@ENST00000417881
6.89e-112FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_eb1ba38ce5e5de2ee418777742748d0cp1@ENST00000417881
7.85e-112FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_9c4844885c0be94cee42a05800748200p6@DPP6
7.85e-112FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_9c4844885c0be94cee42a05800748200p6@DPP6
1.02e-111FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_32a855aaf31babc110be11a7d2acb99dp2@CDH9
1.02e-111FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_32a855aaf31babc110be11a7d2acb99dp2@CDH9
1.42e-111FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_a6734a59734ae4ee924fbb2cf316590bp@chr2:3134361..3134374, -
1.42e-111FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_a6734a59734ae4ee924fbb2cf316590bp@chr2:3134361..3134374, -
1.94e-111FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_ea42db352a7cb45a33de06e1908b295ap3@TIAM2
1.94e-111FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_ea42db352a7cb45a33de06e1908b295ap3@TIAM2
3.18e-111FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_bc52a119b7ca265d17c4efd1727b29d2p1@KALRN
3.18e-111FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_bc52a119b7ca265d17c4efd1727b29d2p1@KALRN
4.18e-111FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_5833ea0f8581577dab17ce713d31eca2p4@ASTN1
4.18e-111FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_5833ea0f8581577dab17ce713d31eca2p4@ASTN1
5.69e-111FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_1eb49ab3535e69a550ce5e0194f015d7p@chr11:132982177..132982181, -
5.69e-111FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_1eb49ab3535e69a550ce5e0194f015d7p@chr11:132982177..132982181, -
7.54e-111FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_14d780526ecd38295c95e7fbfd2ee861p5@NKAIN3
7.54e-111FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_14d780526ecd38295c95e7fbfd2ee861p5@NKAIN3
1.27e-110FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_e73e8b07f1f0635e8c8d2965df79dfe4p9@ANKS1B
1.27e-110FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_e73e8b07f1f0635e8c8d2965df79dfe4p9@ANKS1B
1.38e-110FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_dc6cbf30516c6216c08764e2a29586e1p3@ARNT2
1.38e-110FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_dc6cbf30516c6216c08764e2a29586e1p3@ARNT2
2.12e-110FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_3e0cbabaf214f64620486f8e27871cefp@chr20:1791316..1791339, -
2.12e-110FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_3e0cbabaf214f64620486f8e27871cefp@chr20:1791316..1791339, -
2.27e-110FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_30735919c820fbed52b89ab812435c64p14@PALM2-AKAP2
2.27e-110FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_30735919c820fbed52b89ab812435c64p14@PALM2-AKAP2
3.45e-110FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_9d7ce64479a73e35a5f5143bae3903e5p6@GPM6B
3.45e-110FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_9d7ce64479a73e35a5f5143bae3903e5p6@GPM6B
4.23e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_554916425bbaaaf9e77622fa98c3e6e7p1@ENST00000412957
4.23e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_554916425bbaaaf9e77622fa98c3e6e7p1@ENST00000412957
5.12e-110FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_74e7ca1c54eaa288a5c71dc3ad61e4eep7@ANKS1B
5.12e-110FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_74e7ca1c54eaa288a5c71dc3ad61e4eep7@ANKS1B
7.19e-110FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_bc435cfa4d063b87cc86ad58c963dab4p@chr20:1791288..1791304, -
7.19e-110FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_bc435cfa4d063b87cc86ad58c963dab4p@chr20:1791288..1791304, -
9.49e-110FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_35bcde3fd1dc9c8d4f47cf9e5fb2cc56p@chr21:43917145..43917190, -
9.49e-110FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_35bcde3fd1dc9c8d4f47cf9e5fb2cc56p@chr21:43917145..43917190, -
1.01e-109FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_e13651add36fc436e5f996cb114f8529p2@TIAM2
1.01e-109FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_e13651add36fc436e5f996cb114f8529p2@TIAM2