Personal tools

UBERON:0003513

From FANTOM5_SSTAR

Revision as of 08:40, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:trunk blood vessel
Namespace:FANTOM
Definition:"A blood vessel that is part of a trunk [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000511
Synonyms: "blood vessel of torso" EXACT [OBOL:automatic]
"blood vessel of trunk" EXACT [OBOL:automatic]
"torso blood vessel" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001981(blood vessel)
part_of:UBERON:0002100(trunk)



Children

is a:UBERON:0003834 (thoracic segment blood vessel),UBERON:0003835 (abdominal segment blood vessel),UBERON:0005622 (right dorsal aorta),UBERON:0005805 (dorsal aorta)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11289-117A2 (Smooth Muscle Cells - Subclavian Artery, donor1)
  • 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
  • 11366-117I7 (Smooth Muscle Cells - Subclavian Artery, donor2)
  • 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)
  • 11438-118H7 (Smooth Muscle Cells - Subclavian Artery, donor3)
  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)

... further results Mouse (Mus musculus)

  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11289-117A2 (Smooth Muscle Cells - Subclavian Artery, donor1)
  • 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
  • 11366-117I7 (Smooth Muscle Cells - Subclavian Artery, donor2)
  • 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)
  • 11438-118H7 (Smooth Muscle Cells - Subclavian Artery, donor3)
  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003513 (trunk blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr3:104857794..104857802, -
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr9:42915185..42915192, -
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_4496c44f15d11b0db3cb2e6f67e2a000p8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr13:96429295..96429302, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr13:113053257..113053258, +
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr8:3311867..3311873, +
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_4496c44f15d11b0db3cb2e6f67e2a000p6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr8:111108947..111108951, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_4496c44f15d11b0db3cb2e6f67e2a000p4@Pag1
3.07e-86FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr11:117829935..117829959, -
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr4:62009160..62009164, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr16:85547242..85547252, +
3.07e-86FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_4496c44f15d11b0db3cb2e6f67e2a000p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_4496c44f15d11b0db3cb2e6f67e2a000p@chr18:47491114..47491123, +

Retrieved from "http://f5-webapp3.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003513&oldid=3277562"