UBERON:0003714: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=FMA definition includes vasculature | |comment=FMA definition includes vasculature | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from=UBERON:0004755 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003714 | |||
|is_a=UBERON:0000479 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=neural tissue | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001016 | |part_of=UBERON:0001016 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string | |||
|subset= | |||
|synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642] | |||
|union_of= | |||
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009 | |||
}} | }} | ||
Latest revision as of 17:41, 12 September 2014
| Name: | neural tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642] | ||
| Xrefs: |
| ||
| Synonyms: |
"nerve tissue" EXACT [FMA:9642] "nervous tissue" EXACT [FMA:9642] "portion of neural tissue" EXACT [FMA:9642] | ||
| Comments: | FMA definition includes vasculature |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue) |
|---|---|
| disjoint_from: | UBERON:0004755(skeletal tissue) |
| part_of: | UBERON:0001016(nervous system) |
Children
| is a: | UBERON:0000045 (ganglion),UBERON:0001810 (nerve plexus) |
|---|---|
| disjoint from: | UBERON:0001013 (adipose tissue),UBERON:0002385 (muscle tissue) |
| derives from: | FF:0102912 (neuroepithelioma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 10728-110A8 (neuroepithelioma cell line:SK-N-MC)
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Mouse (Mus musculus)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 10728-110A8 (neuroepithelioma cell line:SK-N-MC)
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003714 (neural tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.75e-130 | FFCP PHASE2:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8 | p@chr2:212586166..212586168, - |
| 1.75e-130 | FFCP PHASE1:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8 | p@chr2:212586166..212586168, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr1:21339635..21339636, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr12:57628762..57628773, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr1:21339635..21339636, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr12:57628762..57628773, - |
| 5.22e-79 | FFCP PHASE1:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4e | p@chr8:6081804..6081807, - |
| 5.22e-79 | FFCP PHASE2:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4e | p@chr8:6081804..6081807, - |
| 2.03e-66 | FFCP PHASE2:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fd | p@chr8:27057116..27057118, + |
| 2.03e-66 | FFCP PHASE1:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fd | p@chr8:27057116..27057118, + |
| 2.84e-66 | FFCP PHASE2:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cd | p30@SOX6 |
| 2.84e-66 | FFCP PHASE1:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cd | p30@SOX6 |
| 7.73e-66 | FFCP PHASE1:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821 | p@chr2:29703653..29703657, - |
| 7.73e-66 | FFCP PHASE2:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821 | p@chr2:29703653..29703657, - |
| 2.0e-56 | FFCP PHASE2:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9 | p@chr11:126010526..126010554, - |
| 2.0e-56 | FFCP PHASE1:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9 | p@chr11:126010526..126010554, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:74702556..74702558, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53 | p28@KIAA1456 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53 | p@chr2:60133192..60133194, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:25161980..25161984, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53 | p@chr5:149250331..149250335, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:74702556..74702558, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:25161980..25161984, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53 | p@chr4:127394496..127394500, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53 | p@chr1:62928606..62928608, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53 | p@chr5:151258901..151258902, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53 | p@chr2:188432107..188432111, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53 | p@chr1:22696471..22696505, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53 | p@chr5:149250331..149250335, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53 | p9@ADRB3 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53 | p@chr5:151258901..151258902, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53 | p@chr4:127394496..127394500, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53 | p@chr7:15056365..15056368, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53 | p@chr1:62928606..62928608, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53 | p@chr2:188432107..188432111, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53 | p@chr1:22696471..22696505, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53 | p28@KIAA1456 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53 | p@chr14:105807545..105807554, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53 | p@chr2:60133192..60133194, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53 | p@chr7:15056365..15056368, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53 | p@chr14:105807545..105807554, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53 | p9@ADRB3 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:154942133..154942148, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:33229308..33229311, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_9b72837bdb72ff9efe1143abbdbacba2 | p18@TGFB3 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr18:39859562..39859566, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_9b72837bdb72ff9efe1143abbdbacba2 | p10@PPAP2A |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr7:73444812..73444816, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:165170873..165170919, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:27750995..27750997, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr2:29645795..29645797,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:29645795..29645797, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:109466651..109466653, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:240176859..240176904,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:240176859..240176904, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr15:36402459..36402465, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:133945378..133945386, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:68589926..68589929, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_9b72837bdb72ff9efe1143abbdbacba2 | p10@ALK |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr18:39859562..39859566, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:91509972..91509984,-#_9b72837bdb72ff9efe1143abbdbacba2 | p3@MTERF |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr10:22768515..22768517, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_9b72837bdb72ff9efe1143abbdbacba2 | p59@ANK3 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:111570472..111570478, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:193615743..193615750,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:193615743..193615750, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:130597061..130597068, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:72875355..72875358, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:88034381..88034386, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr9:19514976..19514978, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:168558338..168558388, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr17:12935401..12935405,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr17:12935401..12935405, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_9b72837bdb72ff9efe1143abbdbacba2 | p7@TMEM88B |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:21203484..21203485,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:21203484..21203485, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:7709325..7709329,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:7709325..7709329, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chrX:25873187..25873209, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:37824071..37824078,-#_9b72837bdb72ff9efe1143abbdbacba2 | p5@ADRB3 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_9b72837bdb72ff9efe1143abbdbacba2 | p1@ENST00000510391 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr7:95704857..95704906, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:86911063..86911068, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:37227792..37227796,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:37227792..37227796, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr12:69678255..69678259,+#_9b72837bdb72ff9efe1143abbdbacba2 | p1@ENST00000548895 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:44991346..44991355, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:104346803..104346806,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:104346803..104346806, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:29484252..29484254,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:29484252..29484254, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr2:171939999..171940009,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:171939999..171940009, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr16:66170755..66170759, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:121951983..121951986, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr2:242742205..242742253,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:242742205..242742253, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:203036812..203036840,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:203036812..203036840, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:88034381..88034386, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr7:88535666..88535671, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:131712314..131712315,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:131712314..131712315, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_9b72837bdb72ff9efe1143abbdbacba2 | p41@NAV3 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:126962527..126962529, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:66713214..66713221, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:22000519..22000525, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr4:139501766..139501798, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr19:48479835..48479841, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:77060783..77060789,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:77060783..77060789, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr2:97626726..97626741,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:97626726..97626741, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr16:51174920..51174928, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr14:37227792..37227796,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:37227792..37227796, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
