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{{UBERON
{{UBERON
|id=UBERON:0004054
|alt_id=
|name=internal male genitalia
|anatomical_img_id=FMA:45655
|namespace=
|def="the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
|xref=BTO:0003096;;FMA:45655;;SCTID:310536002
|is_a=UBERON:0003135;;UBERON:0004175
|synonym="internal male genital organ" EXACT [BTO:0003096];;"male internal genitalia" EXACT [FMA:45655];;"organa genitalia masculina interna" RELATED [BTO:0003096]
|comment=Editor note: consider splitting genitalia from genital organ
|comment=Editor note: consider splitting genitalia from genital organ
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
|subset=organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004054
|is_a=UBERON:0003135 ;;UBERON:0004175
|is_obsolete=
|located_in=
|located_in=
|name=internal male genitalia
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000079
|part_of=UBERON:0000079
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym="internal male genital organ" EXACT [BTO:0003096];;"male internal genitalia" EXACT [FMA:45655];;"organa genitalia masculina interna" RELATED [BTO:0003096]
|union_of=
|xref=BTO:0003096;;FMA:45655;;SCTID:310536002
}}
}}

Latest revision as of 17:42, 12 September 2014

Name:internal male genitalia
Namespace:FANTOM
Definition:"the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
Xrefs:
links:

BTO:0003096
FMA:45655

SCTID:310536002
Synonyms: "internal male genital organ" EXACT [BTO:0003096]
"male internal genitalia" EXACT [FMA:45655]
"organa genitalia masculina interna" RELATED [BTO:0003096]
Comments:Editor note: consider splitting genitalia from genital organ
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003135(male reproductive organ),UBERON:0004175(internal genitalia)
part_of:UBERON:0000079(male reproductive system)



Children

part of:UBERON:0005352 (spermatic cord),UBERON:0006947 (male genital duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004054 (internal male genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_b5fa5f03202162f851ac5421c58909b4p@chr14:105935020..105935028, -
2.79e-195FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_b5fa5f03202162f851ac5421c58909b4p3@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_b5fa5f03202162f851ac5421c58909b4p2@PATE1
2.79e-195FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_b5fa5f03202162f851ac5421c58909b4p2@EDDM3A
2.79e-195FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618661..125618677, +
2.79e-195FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618495..125618517, +
2.79e-195FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_b5fa5f03202162f851ac5421c58909b4p@chr15:25165150..25165161, +
2.79e-195FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_b5fa5f03202162f851ac5421c58909b4p@chr14:105935020..105935028, -
2.79e-195FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_b5fa5f03202162f851ac5421c58909b4p@chr15:25165150..25165161, +
2.79e-195FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_b5fa5f03202162f851ac5421c58909b4p2@EDDM3A
2.79e-195FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_b5fa5f03202162f851ac5421c58909b4p1@LCN9
2.79e-195FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_b5fa5f03202162f851ac5421c58909b4p@chr3:140961228..140961237, +
2.79e-195FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618739..125618756, -
2.79e-195FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618661..125618677, +
2.79e-195FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:69950851..69950887, +
2.79e-195FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125617607..125617617, +
2.79e-195FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:69950851..69950887, +
2.79e-195FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_b5fa5f03202162f851ac5421c58909b4p3@EDDM3A
2.79e-195FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_b5fa5f03202162f851ac5421c58909b4p1@LCN9
2.79e-195FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_b5fa5f03202162f851ac5421c58909b4p@chr3:140961228..140961237, +
2.79e-195FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_b5fa5f03202162f851ac5421c58909b4p2@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618739..125618756, -
2.79e-195FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125617636..125617646, +
2.79e-195FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125617607..125617617, +
2.79e-195FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_b5fa5f03202162f851ac5421c58909b4p3@EDDM3A
2.79e-195FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_b5fa5f03202162f851ac5421c58909b4p@chrX:112044378..112044412, -
2.79e-195FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_b5fa5f03202162f851ac5421c58909b4p3@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_b5fa5f03202162f851ac5421c58909b4p2@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:69951723..69951737, +
2.79e-195FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_b5fa5f03202162f851ac5421c58909b4p2@PATE1
2.79e-195FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125618495..125618517, +
2.79e-195FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:125617636..125617646, +
2.79e-195FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_b5fa5f03202162f851ac5421c58909b4p@chr11:69951723..69951737, +
2.79e-195FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_b5fa5f03202162f851ac5421c58909b4p@chrX:112044378..112044412, -
3.27e-147FFCP PHASE1:Hg19::chr10:119307515..119307518,+#_bc1075cd73c6feb0190e54d648d990d4p23@EMX2
3.27e-147FFCP PHASE1:Hg19::chr7:25702669..25702678,-#_bc1075cd73c6feb0190e54d648d990d4p4@ENST00000446840, p4@uc003sxp.1
3.27e-147FFCP PHASE2:Hg19::chr11:92922903..92922918,+#_bc1075cd73c6feb0190e54d648d990d4p@chr11:92922903..92922918, +
3.27e-147FFCP PHASE2:Hg19::chr16:2126158..2126172,+#_bc1075cd73c6feb0190e54d648d990d4p9@TSC2
3.27e-147FFCP PHASE1:Hg19::chr14:21214039..21214057,+#_bc1075cd73c6feb0190e54d648d990d4p1@EDDM3A
3.27e-147FFCP PHASE2:Hg19::chr10:114094924..114094935,-#_bc1075cd73c6feb0190e54d648d990d4p@chr10:114094924..114094935, -
3.27e-147FFCP PHASE2:Hg19::chr14:21214039..21214057,+#_bc1075cd73c6feb0190e54d648d990d4p1@EDDM3A
3.27e-147FFCP PHASE1:Hg19::chr11:69951071..69951079,+#_bc1075cd73c6feb0190e54d648d990d4p@chr11:69951071..69951079, +
3.27e-147FFCP PHASE2:Hg19::chr11:69951071..69951079,+#_bc1075cd73c6feb0190e54d648d990d4p@chr11:69951071..69951079, +
3.27e-147FFCP PHASE1:Hg19::chr10:114094924..114094935,-#_bc1075cd73c6feb0190e54d648d990d4p@chr10:114094924..114094935, -
3.27e-147FFCP PHASE2:Hg19::chr10:119307515..119307518,+#_bc1075cd73c6feb0190e54d648d990d4p23@EMX2
3.27e-147FFCP PHASE2:Hg19::chr7:25702669..25702678,-#_bc1075cd73c6feb0190e54d648d990d4p4@ENST00000446840, p4@uc003sxp.1
3.27e-147FFCP PHASE1:Hg19::chr16:2126158..2126172,+#_bc1075cd73c6feb0190e54d648d990d4p9@TSC2
3.27e-147FFCP PHASE1:Hg19::chr11:92922903..92922918,+#_bc1075cd73c6feb0190e54d648d990d4p@chr11:92922903..92922918, +
5.41e-147FFCP PHASE1:Hg19::chr11:125706033..125706038,+#_c3b3cc609e557f66c6d004e29d532832p@chr11:125706033..125706038, +
5.41e-147FFCP PHASE1:Hg19::chr11:69950033..69950046,+#_c3b3cc609e557f66c6d004e29d532832p11@ANO1
5.41e-147FFCP PHASE2:Hg19::chr11:69950033..69950046,+#_c3b3cc609e557f66c6d004e29d532832p11@ANO1
5.41e-147FFCP PHASE1:Hg19::chr15:64423864..64423884,+#_c3b3cc609e557f66c6d004e29d532832p8@SNX1
5.41e-147FFCP PHASE1:Hg19::chr17:59475447..59475455,+#_c3b3cc609e557f66c6d004e29d532832p@chr17:59475447..59475455, +
5.41e-147FFCP PHASE2:Hg19::chr15:64423864..64423884,+#_c3b3cc609e557f66c6d004e29d532832p8@SNX1
5.41e-147FFCP PHASE2:Hg19::chr17:59475447..59475455,+#_c3b3cc609e557f66c6d004e29d532832p@chr17:59475447..59475455, +
5.41e-147FFCP PHASE2:Hg19::chr11:125706033..125706038,+#_c3b3cc609e557f66c6d004e29d532832p@chr11:125706033..125706038, +
8.93e-147FFCP PHASE1:Hg19::chr10:102505147..102505162,+#_7c738a1dfb98e7b108cfbee585465c7ep9@PAX2
8.93e-147FFCP PHASE2:Hg19::chr2:87985242..87985251,-#_7c738a1dfb98e7b108cfbee585465c7ep@chr2:87985242..87985251, -
8.93e-147FFCP PHASE1:Hg19::chr2:87985242..87985251,-#_7c738a1dfb98e7b108cfbee585465c7ep@chr2:87985242..87985251, -
8.93e-147FFCP PHASE2:Hg19::chr10:102505147..102505162,+#_7c738a1dfb98e7b108cfbee585465c7ep9@PAX2
1.47e-146FFCP PHASE1:Hg19::chr3:107201385..107201388,-#_efae16a6c734c0a498a651f50a0cac8dp@chr3:107201385..107201388, -
1.47e-146FFCP PHASE2:Hg19::chr3:107201385..107201388,-#_efae16a6c734c0a498a651f50a0cac8dp@chr3:107201385..107201388, -
8.98e-131FFCP PHASE2:Hg19::chr20:43838283..43838286,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43838283..43838286, +
8.98e-131FFCP PHASE2:Hg19::chr19:15730135..15730149,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:15730135..15730149, +
8.98e-131FFCP PHASE1:Hg19::chr19:15706318..15706336,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:15706318..15706336, +
8.98e-131FFCP PHASE2:Hg19::chr20:43850545..43850564,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850545..43850564, +
8.98e-131FFCP PHASE1:Hg19::chr20:43838343..43838355,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43838343..43838355, +
8.98e-131FFCP PHASE1:Hg19::chr19:20265757..20265766,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:20265757..20265766, +
8.98e-131FFCP PHASE2:Hg19::chr20:43851712..43851727,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851712..43851727, +
8.98e-131FFCP PHASE1:Hg19::chr20:43851326..43851348,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851326..43851348, +
8.98e-131FFCP PHASE1:Hg19::chr20:43836162..43836169,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43836162..43836169, -
8.98e-131FFCP PHASE1:Hg19::chr2:80773061..80773072,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr2:80773061..80773072, +
8.98e-131FFCP PHASE2:Hg19::chr6:46159025..46159070,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr6:46159025..46159070, +
8.98e-131FFCP PHASE2:Hg19::chr20:43837135..43837167,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43837135..43837167, +
8.98e-131FFCP PHASE1:Hg19::chr20:43852958..43852972,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43852958..43852972, +
8.98e-131FFCP PHASE1:Hg19::chr11:1025034..1025037,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr11:1025034..1025037, -
8.98e-131FFCP PHASE1:Hg19::chr11:69954393..69954400,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr11:69954393..69954400, -
8.98e-131FFCP PHASE1:Hg19::chr6:49989700..49989711,-#_ec6eaba8190ff5751b61d4c6dccfcd40p1@DEFB110
8.98e-131FFCP PHASE2:Hg19::chr2:18887940..18887947,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr2:18887940..18887947, +
8.98e-131FFCP PHASE2:Hg19::chrX:11289165..11289191,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chrX:11289165..11289191, -
8.98e-131FFCP PHASE1:Hg19::chr15:91849948..91849962,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr15:91849948..91849962, +
8.98e-131FFCP PHASE1:Hg19::chr4:42942084..42942100,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr4:42942084..42942100, +
8.98e-131FFCP PHASE2:Hg19::chr20:43851353..43851363,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851353..43851363, +
8.98e-131FFCP PHASE2:Hg19::chr20:43836170..43836181,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43836170..43836181, -
8.98e-131FFCP PHASE1:Hg19::chr20:43850941..43850991,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850941..43850991, +
8.98e-131FFCP PHASE2:Hg19::chr20:43836736..43836753,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43836736..43836753, +
8.98e-131FFCP PHASE1:Hg19::chr20:43851831..43851874,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43851831..43851874, +
8.98e-131FFCP PHASE1:Hg19::chr7:20655284..20655295,+#_ec6eaba8190ff5751b61d4c6dccfcd40p5@ABCB5
8.98e-131FFCP PHASE1:Hg19::chr16:55909231..55909242,-#_ec6eaba8190ff5751b61d4c6dccfcd40p2@CES5A
8.98e-131FFCP PHASE2:Hg19::chr13:103347376..103347414,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr13:103347376..103347414, -
8.98e-131FFCP PHASE2:Hg19::chr6:50017636..50017649,-#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr6:50017636..50017649, -
8.98e-131FFCP PHASE1:Hg19::chr3:49699854..49699887,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr3:49699854..49699887, +
8.98e-131FFCP PHASE2:Hg19::chr1:26217127..26217131,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr1:26217127..26217131, +
8.98e-131FFCP PHASE1:Hg19::chr20:44207890..44207899,-#_ec6eaba8190ff5751b61d4c6dccfcd40p2@WFDC8
8.98e-131FFCP PHASE1:Hg19::chr19:15732081..15732088,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr19:15732081..15732088, +
8.98e-131FFCP PHASE2:Hg19::chr15:91849918..91849931,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr15:91849918..91849931, +
8.98e-131FFCP PHASE1:Hg19::chrX:16913211..16913222,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chrX:16913211..16913222, +
8.98e-131FFCP PHASE2:Hg19::chr15:25165137..25165145,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr15:25165137..25165145, +
8.98e-131FFCP PHASE2:Hg19::chr20:43850995..43851023,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850995..43851023, +
8.98e-131FFCP PHASE1:Hg19::chr20:43850651..43850662,+#_ec6eaba8190ff5751b61d4c6dccfcd40p@chr20:43850651..43850662, +

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