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{{UBERON
 
{{UBERON
|id=UBERON:0004177
+
|alt_id=
|name=hemopoietic organ
 
|namespace=
 
|def="Organ that is part of the hematopoietic system." [GOC:Obol]
 
|xref=BTO:0004605;;FMA:7143
 
|is_a=UBERON:0000062;;UBERON:0004120
 
|synonym="haematological system organ" EXACT [OBOL:automatic];;"haemopoietic system organ" EXACT [OBOL:automatic];;"hematopoeitic or lymphoid organ" NARROW [];;"hematopoietic system organ" EXACT [OBOL:automatic];;"lymphoid organ" NARROW [BTO:0004605, FMA:7143];;"organ of haematological system" EXACT [OBOL:automatic];;"organ of haemopoietic system" EXACT [OBOL:automatic];;"organ of hematopoietic system" EXACT [OBOL:automatic];;"organ of organa haemopoietica" EXACT [OBOL:automatic];;"organa haemopoietica organ" EXACT [OBOL:automatic]
 
 
|comment=note that the FMA class 'lymphoid organ' is a general anatomical term
 
|comment=note that the FMA class 'lymphoid organ' is a general anatomical term
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="Organ that is part of the hematopoietic system." [GOC:Obol]
|subset=organ_slim
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0004177
 +
|is_a=UBERON:0000062 ;;UBERON:0004120
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=hemopoietic organ
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=UBERON:0002390
 
|part_of=UBERON:0002390
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=organ_slim
|preceded_by=
+
|synonym="haematological system organ" EXACT [OBOL:automatic];;"haemopoietic system organ" EXACT [OBOL:automatic];;"hematopoeitic or lymphoid organ" NARROW [];;"hematopoietic system organ" EXACT [OBOL:automatic];;"lymphoid organ" NARROW [BTO:0004605, FMA:7143];;"organ of haematological system" EXACT [OBOL:automatic];;"organ of haemopoietic system" EXACT [OBOL:automatic];;"organ of hematopoietic system" EXACT [OBOL:automatic];;"organ of organa haemopoietica" EXACT [OBOL:automatic];;"organa haemopoietica organ" EXACT [OBOL:automatic]
 +
|union_of=
 +
|xref=BTO:0004605;;FMA:7143
 
}}
 
}}

Latest revision as of 08:44, 12 September 2014

Name:hemopoietic organ
Namespace:FANTOM
Definition:"Organ that is part of the hematopoietic system." [GOC:Obol]
Xrefs:
links:

BTO:0004605

FMA:7143
Synonyms: "haematological system organ" EXACT [OBOL:automatic]
"haemopoietic system organ" EXACT [OBOL:automatic]
"hematopoeitic or lymphoid organ" NARROW []
"hematopoietic system organ" EXACT [OBOL:automatic]
"lymphoid organ" NARROW [BTO:0004605, FMA:7143]
"organ of haematological system" EXACT [OBOL:automatic]
"organ of haemopoietic system" EXACT [OBOL:automatic]
"organ of hematopoietic system" EXACT [OBOL:automatic]
"organ of organa haemopoietica" EXACT [OBOL:automatic]
"organa haemopoietica organ" EXACT [OBOL:automatic]
Comments:note that the FMA class 'lymphoid organ' is a general anatomical term
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000062(organ),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0002390(hematopoietic system)



Children

is a:UBERON:0002106 (spleen),UBERON:0002370 (thymus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004177 (hemopoietic organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.28e-84FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_dc933c53b05fab2a24db6ee690707fdap3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.28e-84FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_dc933c53b05fab2a24db6ee690707fdap3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.79e-75FFCP PHASE2:Hg19::chr14:106653357..106653369,+#_7883c3d68632ca7beb0d143e3f303077p@chr14:106653357..106653369, +
1.79e-75FFCP PHASE1:Hg19::chr14:106653357..106653369,+#_7883c3d68632ca7beb0d143e3f303077p@chr14:106653357..106653369, +
6.87e-64FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_c2e3956933d883556af719e802f4df7cp4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
6.87e-64FFCP PHASE1:Hg19::chr2:95715295..95715305,+#_c2e3956933d883556af719e802f4df7cp@chr2:95715295..95715305, +
6.87e-64FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_c2e3956933d883556af719e802f4df7cp4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
6.87e-64FFCP PHASE2:Hg19::chr2:95715295..95715305,+#_c2e3956933d883556af719e802f4df7cp@chr2:95715295..95715305, +
4.76e-57FFCP PHASE2:Hg19::chr10:72542272..72542281,-#_31a5ed88b11736d052fed0528d312d84p6@C10orf27
4.76e-57FFCP PHASE2:Hg19::chr10:98014908..98014919,-#_31a5ed88b11736d052fed0528d312d84p@chr10:98014908..98014919, -
4.76e-57FFCP PHASE2:Hg19::chr10:98014943..98014960,-#_31a5ed88b11736d052fed0528d312d84p@chr10:98014943..98014960, -
4.76e-57FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_31a5ed88b11736d052fed0528d312d84p@chr11:1891326..1891337, -
4.76e-57FFCP PHASE2:Hg19::chr11:36589389..36589398,-#_31a5ed88b11736d052fed0528d312d84p@chr11:36589389..36589398, -
4.76e-57FFCP PHASE2:Hg19::chr11:36622593..36622605,+#_31a5ed88b11736d052fed0528d312d84p@chr11:36622593..36622605, +
4.76e-57FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_31a5ed88b11736d052fed0528d312d84p@chr11:56859584..56859589, -
4.76e-57FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_31a5ed88b11736d052fed0528d312d84p@chr11:56859603..56859606, -
4.76e-57FFCP PHASE2:Hg19::chr11:56859608..56859619,-#_31a5ed88b11736d052fed0528d312d84p@chr11:56859608..56859619, -
4.76e-57FFCP PHASE2:Hg19::chr11:56859638..56859643,-#_31a5ed88b11736d052fed0528d312d84p@chr11:56859638..56859643, -
4.76e-57FFCP PHASE2:Hg19::chr11:56859693..56859701,-#_31a5ed88b11736d052fed0528d312d84p@chr11:56859693..56859701, -
4.76e-57FFCP PHASE2:Hg19::chr11:6953654..6953661,+#_31a5ed88b11736d052fed0528d312d84p5@ZNF215
4.76e-57FFCP PHASE2:Hg19::chr11:8954087..8954092,-#_31a5ed88b11736d052fed0528d312d84p1@AB527792
4.76e-57FFCP PHASE2:Hg19::chr11:925449..925458,+#_31a5ed88b11736d052fed0528d312d84p17@AP2A2
4.76e-57FFCP PHASE2:Hg19::chr12:123559708..123559720,-#_31a5ed88b11736d052fed0528d312d84p@chr12:123559708..123559720, -
4.76e-57FFCP PHASE2:Hg19::chr12:123559773..123559784,-#_31a5ed88b11736d052fed0528d312d84p@chr12:123559773..123559784, -
4.76e-57FFCP PHASE2:Hg19::chr12:123560608..123560615,-#_31a5ed88b11736d052fed0528d312d84p24@PITPNM2
4.76e-57FFCP PHASE2:Hg19::chr12:123560793..123560802,+#_31a5ed88b11736d052fed0528d312d84p@chr12:123560793..123560802, +
4.76e-57FFCP PHASE2:Hg19::chr12:123607146..123607168,-#_31a5ed88b11736d052fed0528d312d84p@chr12:123607146..123607168, -
4.76e-57FFCP PHASE2:Hg19::chr12:123627753..123627760,+#_31a5ed88b11736d052fed0528d312d84p@chr12:123627753..123627760, +
4.76e-57FFCP PHASE2:Hg19::chr12:123634449..123634460,-#_31a5ed88b11736d052fed0528d312d84p25@PITPNM2
4.76e-57FFCP PHASE2:Hg19::chr12:123636839..123636885,-#_31a5ed88b11736d052fed0528d312d84p@chr12:123636839..123636885, -
4.76e-57FFCP PHASE2:Hg19::chr12:133413547..133413557,-#_31a5ed88b11736d052fed0528d312d84p13@POLE
4.76e-57FFCP PHASE2:Hg19::chr12:133414662..133414671,-#_31a5ed88b11736d052fed0528d312d84p@chr12:133414662..133414671, -
4.76e-57FFCP PHASE2:Hg19::chr12:47205180..47205187,+#_31a5ed88b11736d052fed0528d312d84p@chr12:47205180..47205187, +
4.76e-57FFCP PHASE2:Hg19::chr12:48225126..48225164,+#_31a5ed88b11736d052fed0528d312d84p1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909
4.76e-57FFCP PHASE2:Hg19::chr12:48227243..48227269,+#_31a5ed88b11736d052fed0528d312d84p@chr12:48227243..48227269, +
4.76e-57FFCP PHASE2:Hg19::chr12:59432175..59432191,+#_31a5ed88b11736d052fed0528d312d84p@chr12:59432175..59432191, +
4.76e-57FFCP PHASE2:Hg19::chr13:99628323..99628332,-#_31a5ed88b11736d052fed0528d312d84p@chr13:99628323..99628332, -
4.76e-57FFCP PHASE2:Hg19::chr13:99628347..99628352,-#_31a5ed88b11736d052fed0528d312d84p@chr13:99628347..99628352, -
4.76e-57FFCP PHASE2:Hg19::chr13:99628369..99628374,-#_31a5ed88b11736d052fed0528d312d84p@chr13:99628369..99628374, -
4.76e-57FFCP PHASE2:Hg19::chr13:99628388..99628399,-#_31a5ed88b11736d052fed0528d312d84p@chr13:99628388..99628399, -
4.76e-57FFCP PHASE2:Hg19::chr14:22942319..22942322,+#_31a5ed88b11736d052fed0528d312d84p4@uc001wec.2
4.76e-57FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_31a5ed88b11736d052fed0528d312d84p12@JDP2
4.76e-57FFCP PHASE2:Hg19::chr14:98229095..98229108,-#_31a5ed88b11736d052fed0528d312d84p1@ENST00000555187
4.76e-57FFCP PHASE2:Hg19::chr15:56940722..56940731,+#_31a5ed88b11736d052fed0528d312d84p@chr15:56940722..56940731, +
4.76e-57FFCP PHASE2:Hg19::chr15:56940732..56940741,+#_31a5ed88b11736d052fed0528d312d84p@chr15:56940732..56940741, +
4.76e-57FFCP PHASE2:Hg19::chr15:57017749..57017755,-#_31a5ed88b11736d052fed0528d312d84p@chr15:57017749..57017755, -
4.76e-57FFCP PHASE2:Hg19::chr15:58069384..58069408,+#_31a5ed88b11736d052fed0528d312d84p@chr15:58069384..58069408, +
4.76e-57FFCP PHASE2:Hg19::chr15:58069582..58069594,+#_31a5ed88b11736d052fed0528d312d84p@chr15:58069582..58069594, +
4.76e-57FFCP PHASE2:Hg19::chr15:58069597..58069604,+#_31a5ed88b11736d052fed0528d312d84p@chr15:58069597..58069604, +
4.76e-57FFCP PHASE2:Hg19::chr15:58069758..58069762,+#_31a5ed88b11736d052fed0528d312d84p@chr15:58069758..58069762, +
4.76e-57FFCP PHASE2:Hg19::chr15:58920068..58920073,-#_31a5ed88b11736d052fed0528d312d84p@chr15:58920068..58920073, -
4.76e-57FFCP PHASE2:Hg19::chr15:60131313..60131324,-#_31a5ed88b11736d052fed0528d312d84p@chr15:60131313..60131324, -
4.76e-57FFCP PHASE2:Hg19::chr15:60131337..60131352,-#_31a5ed88b11736d052fed0528d312d84p@chr15:60131337..60131352, -
4.76e-57FFCP PHASE2:Hg19::chr15:60131355..60131365,-#_31a5ed88b11736d052fed0528d312d84p@chr15:60131355..60131365, -
4.76e-57FFCP PHASE2:Hg19::chr15:95561320..95561328,-#_31a5ed88b11736d052fed0528d312d84p@chr15:95561320..95561328, -
4.76e-57FFCP PHASE2:Hg19::chr15:99071828..99071840,+#_31a5ed88b11736d052fed0528d312d84p@chr15:99071828..99071840, +
4.76e-57FFCP PHASE2:Hg19::chr16:49633750..49633778,-#_31a5ed88b11736d052fed0528d312d84p@chr16:49633750..49633778, -
4.76e-57FFCP PHASE2:Hg19::chr16:74359040..74359071,+#_31a5ed88b11736d052fed0528d312d84p@chr16:74359040..74359071, +
4.76e-57FFCP PHASE2:Hg19::chr16:84218794..84218800,+#_31a5ed88b11736d052fed0528d312d84p@chr16:84218794..84218800, +
4.76e-57FFCP PHASE2:Hg19::chr17:4090402..4090406,-#_31a5ed88b11736d052fed0528d312d84p@chr17:4090402..4090406, -
4.76e-57FFCP PHASE2:Hg19::chr17:76274572..76274581,-#_31a5ed88b11736d052fed0528d312d84p4@ENST00000374945
4.76e-57FFCP PHASE2:Hg19::chr17:76274646..76274658,-#_31a5ed88b11736d052fed0528d312d84p2@ENST00000374945
4.76e-57FFCP PHASE2:Hg19::chr17:78171885..78171900,+#_31a5ed88b11736d052fed0528d312d84p@chr17:78171885..78171900, +
4.76e-57FFCP PHASE2:Hg19::chr17:80866179..80866188,+#_31a5ed88b11736d052fed0528d312d84p@chr17:80866179..80866188, +
4.76e-57FFCP PHASE2:Hg19::chr18:13437980..13437986,+#_31a5ed88b11736d052fed0528d312d84p@chr18:13437980..13437986, +
4.76e-57FFCP PHASE2:Hg19::chr19:28877072..28877084,-#_31a5ed88b11736d052fed0528d312d84p@chr19:28877072..28877084, -
4.76e-57FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_31a5ed88b11736d052fed0528d312d84p@chr19:32401253..32401271, -
4.76e-57FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_31a5ed88b11736d052fed0528d312d84p7@CD5L
4.76e-57FFCP PHASE2:Hg19::chr1:158170478..158170491,-#_31a5ed88b11736d052fed0528d312d84p@chr1:158170478..158170491, -
4.76e-57FFCP PHASE2:Hg19::chr1:158226030..158226041,+#_31a5ed88b11736d052fed0528d312d84p@chr1:158226030..158226041, +
4.76e-57FFCP PHASE2:Hg19::chr1:158259849..158259854,+#_31a5ed88b11736d052fed0528d312d84p11@CD1C
4.76e-57FFCP PHASE2:Hg19::chr1:158260453..158260459,-#_31a5ed88b11736d052fed0528d312d84p@chr1:158260453..158260459, -
4.76e-57FFCP PHASE2:Hg19::chr1:158260649..158260652,+#_31a5ed88b11736d052fed0528d312d84p13@CD1C
4.76e-57FFCP PHASE2:Hg19::chr1:158301280..158301298,+#_31a5ed88b11736d052fed0528d312d84p@chr1:158301280..158301298, +
4.76e-57FFCP PHASE2:Hg19::chr1:158303678..158303720,-#_31a5ed88b11736d052fed0528d312d84p@chr1:158303678..158303720, -
4.76e-57FFCP PHASE2:Hg19::chr1:158332631..158332640,+#_31a5ed88b11736d052fed0528d312d84p@chr1:158332631..158332640, +
4.76e-57FFCP PHASE2:Hg19::chr1:158334207..158334219,-#_31a5ed88b11736d052fed0528d312d84p1@AK128347
4.76e-57FFCP PHASE2:Hg19::chr1:159172187..159172197,-#_31a5ed88b11736d052fed0528d312d84p1@uc001ftm.1
4.76e-57FFCP PHASE2:Hg19::chr1:160643269..160643276,+#_31a5ed88b11736d052fed0528d312d84p5@ENST00000443928
4.76e-57FFCP PHASE2:Hg19::chr1:160643289..160643296,+#_31a5ed88b11736d052fed0528d312d84p4@ENST00000443928
4.76e-57FFCP PHASE2:Hg19::chr1:194245598..194245600,-#_31a5ed88b11736d052fed0528d312d84p@chr1:194245598..194245600, -
4.76e-57FFCP PHASE2:Hg19::chr1:199026759..199026762,+#_31a5ed88b11736d052fed0528d312d84p@chr1:199026759..199026762, +
4.76e-57FFCP PHASE2:Hg19::chr1:200500161..200500173,-#_31a5ed88b11736d052fed0528d312d84p@chr1:200500161..200500173, -
4.76e-57FFCP PHASE2:Hg19::chr1:204494413..204494420,+#_31a5ed88b11736d052fed0528d312d84p17@MDM4
4.76e-57FFCP PHASE2:Hg19::chr1:204494427..204494436,+#_31a5ed88b11736d052fed0528d312d84p15@MDM4
4.76e-57FFCP PHASE2:Hg19::chr1:204507243..204507252,+#_31a5ed88b11736d052fed0528d312d84p19@MDM4
4.76e-57FFCP PHASE2:Hg19::chr1:2084380..2084413,-#_31a5ed88b11736d052fed0528d312d84p@chr1:2084380..2084413, -
4.76e-57FFCP PHASE2:Hg19::chr1:26320241..26320248,-#_31a5ed88b11736d052fed0528d312d84p@chr1:26320241..26320248, -
4.76e-57FFCP PHASE2:Hg19::chr1:28520450..28520453,-#_31a5ed88b11736d052fed0528d312d84p21@PTAFR
4.76e-57FFCP PHASE2:Hg19::chr1:32314477..32314482,+#_31a5ed88b11736d052fed0528d312d84p@chr1:32314477..32314482, +
4.76e-57FFCP PHASE2:Hg19::chr1:44035057..44035068,+#_31a5ed88b11736d052fed0528d312d84p@chr1:44035057..44035068, +
4.76e-57FFCP PHASE2:Hg19::chr1:44035233..44035242,+#_31a5ed88b11736d052fed0528d312d84p@chr1:44035233..44035242, +
4.76e-57FFCP PHASE2:Hg19::chr1:55776022..55776029,-#_31a5ed88b11736d052fed0528d312d84p@chr1:55776022..55776029, -
4.76e-57FFCP PHASE2:Hg19::chr1:55776031..55776038,-#_31a5ed88b11736d052fed0528d312d84p@chr1:55776031..55776038, -
4.76e-57FFCP PHASE2:Hg19::chr20:30272266..30272271,-#_31a5ed88b11736d052fed0528d312d84p@chr20:30272266..30272271, -
4.76e-57FFCP PHASE2:Hg19::chr20:58830665..58830675,+#_31a5ed88b11736d052fed0528d312d84p@chr20:58830665..58830675, +
4.76e-57FFCP PHASE2:Hg19::chr20:58830799..58830808,+#_31a5ed88b11736d052fed0528d312d84p@chr20:58830799..58830808, +
4.76e-57FFCP PHASE2:Hg19::chr20:58830811..58830825,+#_31a5ed88b11736d052fed0528d312d84p@chr20:58830811..58830825, +
4.76e-57FFCP PHASE2:Hg19::chr20:58830826..58830835,+#_31a5ed88b11736d052fed0528d312d84p@chr20:58830826..58830835, +
4.76e-57FFCP PHASE2:Hg19::chr20:58833004..58833011,+#_31a5ed88b11736d052fed0528d312d84p@chr20:58833004..58833011, +