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{{UBERON
 
{{UBERON
|id=UBERON:0004375
+
|alt_id=
|name=bone of appendage
 
|namespace=
 
|def="A bone that is part of an appendage [Obol]." [OBOL:automatic]
 
|xref=
 
|is_a=UBERON:0001474
 
|synonym="appendage bone" EXACT []
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A bone that is part of an appendage [Obol]." [OBOL:automatic]
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0004375
 +
|is_a=UBERON:0004120 ;;UBERON:0010740
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=UBERON:0000026
+
|name=bone of free limb or fin
 +
|namespace=FANTOM
 +
|obo_creation_date=
 +
|part_of=UBERON:0004708;;UBERON:0011582
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="appendage bone" EXACT []
 +
|union_of=
 +
|xref=
 
}}
 
}}

Latest revision as of 08:45, 12 September 2014

Name:bone of free limb or fin
Namespace:FANTOM
Definition:"A bone that is part of an appendage [Obol]." [OBOL:automatic]
Synonyms: "appendage bone" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0010740(bone of appendage girdle complex)
part_of:UBERON:0004708(paired limb/fin),UBERON:0011582(paired limb/fin skeleton)



Children

is a:UBERON:0002428 (limb bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004375 (bone of free limb or fin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_47f0d42b4b0c51a8cfe5f5dbc9f64d97p26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_47f0d42b4b0c51a8cfe5f5dbc9f64d97p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_3284d3b421390bde192502d64c9faf86p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_3284d3b421390bde192502d64c9faf86p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_3284d3b421390bde192502d64c9faf86p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_3284d3b421390bde192502d64c9faf86p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_3284d3b421390bde192502d64c9faf86p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_3284d3b421390bde192502d64c9faf86p@chr2:32482372..32482381, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_ce6f51b4d4073b2e62bbb54c2349be41p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_ce6f51b4d4073b2e62bbb54c2349be41p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_51baca1a29ca8e8cfa5f2bf23f50e050p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_51baca1a29ca8e8cfa5f2bf23f50e050p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_067953fc744fe9a58231649edee63a58p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_067953fc744fe9a58231649edee63a58p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_067953fc744fe9a58231649edee63a58p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_067953fc744fe9a58231649edee63a58p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_067953fc744fe9a58231649edee63a58p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_067953fc744fe9a58231649edee63a58p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_067953fc744fe9a58231649edee63a58p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_067953fc744fe9a58231649edee63a58p@chr16:24096441..24096449, +
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_22b0bf6309f2253992c65c42b4d43a64p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_22b0bf6309f2253992c65c42b4d43a64p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_9da6733e85e683b6645f6f77f4177b32p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_9da6733e85e683b6645f6f77f4177b32p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_2e48d1e7348389b956e1e8e9dba07a8bp3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_2e48d1e7348389b956e1e8e9dba07a8bp3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_7f21f39c9749d3b2d36671a7f12e65d5p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_7f21f39c9749d3b2d36671a7f12e65d5p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_2ce24a3003b376c764cab0c34f4acd2ep5@Pla2g5
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_2ce24a3003b376c764cab0c34f4acd2ep5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_84c3c74765c2916eaa0f9e202077bdb8p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_84c3c74765c2916eaa0f9e202077bdb8p2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_a2f1f7b0450e07ae8e09bc49d8cda6fap3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_a2f1f7b0450e07ae8e09bc49d8cda6fap3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_81cb6571ac66c65346ae64af122e67dbp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_81cb6571ac66c65346ae64af122e67dbp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_81cb6571ac66c65346ae64af122e67dbp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_81cb6571ac66c65346ae64af122e67dbp2@Oscar
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_65d59d1054edb6193bd5311207f80dfbp4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_65d59d1054edb6193bd5311207f80dfbp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_65d59d1054edb6193bd5311207f80dfbp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_65d59d1054edb6193bd5311207f80dfbp4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_f8f8b0b4286e39d58edfc3cbc98e5068p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_f8f8b0b4286e39d58edfc3cbc98e5068p6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_08610a960b5be1fcc512e7cc162ab261p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_08610a960b5be1fcc512e7cc162ab261p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_08610a960b5be1fcc512e7cc162ab261p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_08610a960b5be1fcc512e7cc162ab261p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_d55575b608eca13fc497e751c17fe929p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_d55575b608eca13fc497e751c17fe929p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_dc2599f54bb1d831d2a4ae36face2465p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_dc2599f54bb1d831d2a4ae36face2465p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_dc2599f54bb1d831d2a4ae36face2465p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_dc2599f54bb1d831d2a4ae36face2465p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_6df3af7e638ddbff36a9d235b17341f6p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_6df3af7e638ddbff36a9d235b17341f6p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_a0e36f9700cc6b41d81ba6d86be1d55dp2@Myoz3
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_a0e36f9700cc6b41d81ba6d86be1d55dp2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_ceadc6bcda9c2bbb94cbfccf60a730f1p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_ceadc6bcda9c2bbb94cbfccf60a730f1p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_024c8bd7627ea5f42a82488b3b42d8a7p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_024c8bd7627ea5f42a82488b3b42d8a7p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_206907f11468cf856d49ec50b6bb9dcep@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_206907f11468cf856d49ec50b6bb9dcep1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_206907f11468cf856d49ec50b6bb9dcep1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_206907f11468cf856d49ec50b6bb9dcep@chr11:67056544..67056589, -
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_07a329e30bfc6742817b4724426605ddp@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_07a329e30bfc6742817b4724426605ddp@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_07a329e30bfc6742817b4724426605ddp@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_07a329e30bfc6742817b4724426605ddp@chr6:90552017..90552024, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_79a30a53bce45de697a90ce8298dbc92p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_79a30a53bce45de697a90ce8298dbc92p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_0c3860a657826b4f9d5bf2e541c80ea5p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_0c3860a657826b4f9d5bf2e541c80ea5p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_cf2de1bf7fafa63d150a5a3975b638f2p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_cf2de1bf7fafa63d150a5a3975b638f2p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_cbe2f7cfa4eb3a770287466a0f7a7d8ap1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_cbe2f7cfa4eb3a770287466a0f7a7d8ap1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_1c4bd77533c21f33b3b584305398e458p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_1c4bd77533c21f33b3b584305398e458p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_d97cb70517e5129057bc2a32ae956fdcp7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_d97cb70517e5129057bc2a32ae956fdcp7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_20393f3b8f9d7f9cf293287f1711652fp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_20393f3b8f9d7f9cf293287f1711652fp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_20393f3b8f9d7f9cf293287f1711652fp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_20393f3b8f9d7f9cf293287f1711652fp@chr7:133600635..133600663, +
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_ccc7b634afce069054c2107feb68c0f8p4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_ccc7b634afce069054c2107feb68c0f8p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_d063f388351845011bb5d36d8d3b8d5ep1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_d063f388351845011bb5d36d8d3b8d5ep1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_85c154e8444a70aaed249f21667dcc65p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_85c154e8444a70aaed249f21667dcc65p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_85c154e8444a70aaed249f21667dcc65p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_85c154e8444a70aaed249f21667dcc65p2@Tm4sf19
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_fe4c791663e65de3a91027b3dbdf95b3p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_fe4c791663e65de3a91027b3dbdf95b3p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_fe4c791663e65de3a91027b3dbdf95b3p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_fe4c791663e65de3a91027b3dbdf95b3p5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_9c224f00c2f120ff9eabdce370671868p2@Siglec15
1.36e-25FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_9c224f00c2f120ff9eabdce370671868p@chr2:180890942..180890956, -