Personal tools

Difference between revisions of "UBERON:0004695"

From FANTOM5_SSTAR

Jump to: navigation, search
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
{{UBERON
 
{{UBERON
|id=UBERON:0004695
+
|alt_id=
|name=arterial system smooth muscle
 
|namespace=
 
|def="A portion of smooth muscle tissue that is part of an arterial system [Obol]." [OBOL:automatic]
 
|xref=MA:0000704
 
|is_a=UBERON:0001135
 
|synonym=
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A portion of smooth muscle tissue that is part of an arterial system [Obol]." [OBOL:automatic]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0004695
 +
|is_a=UBERON:0001135
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=arterial system smooth muscle
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=UBERON:0004572
 
|part_of=UBERON:0004572
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym=
 +
|union_of=
 +
|xref=MA:0000704
 
}}
 
}}

Latest revision as of 08:47, 12 September 2014

Name:arterial system smooth muscle
Namespace:FANTOM
Definition:"A portion of smooth muscle tissue that is part of an arterial system [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000704

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001135(smooth muscle tissue)
part_of:UBERON:0004572(arterial system)



Children

is a:UBERON:0002111 (artery smooth muscle tissue),UBERON:0004178 (aorta smooth muscle tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004695 (arterial system smooth muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_fc0671a8fd5b7d445a15c843758c1e1bp@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_fc0671a8fd5b7d445a15c843758c1e1bp@chr2:178190171..178190178, +
1.58e-86FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_fc0671a8fd5b7d445a15c843758c1e1bp5@Adamts2
1.58e-86FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_fc0671a8fd5b7d445a15c843758c1e1bp@chr17:14802633..14802637, -
1.58e-86FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_fc0671a8fd5b7d445a15c843758c1e1bp@chrX:160839744..160839754, +
1.58e-86FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_fc0671a8fd5b7d445a15c843758c1e1bp@chrX:160839744..160839754, +
1.58e-86FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_fc0671a8fd5b7d445a15c843758c1e1bp@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_fc0671a8fd5b7d445a15c843758c1e1bp@chr17:87574327..87574332, +
1.58e-86FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_fc0671a8fd5b7d445a15c843758c1e1bp@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_fc0671a8fd5b7d445a15c843758c1e1bp@chr17:87574327..87574332, +
1.58e-86FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_fc0671a8fd5b7d445a15c843758c1e1bp@chr17:14827154..14827169, -
1.58e-86FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_fc0671a8fd5b7d445a15c843758c1e1bp@chr8:69228447..69228492, +
1.58e-86FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_fc0671a8fd5b7d445a15c843758c1e1bp@chr2:178190171..178190178, +
1.58e-86FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_fc0671a8fd5b7d445a15c843758c1e1bp@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_fc0671a8fd5b7d445a15c843758c1e1bp5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_fc0671a8fd5b7d445a15c843758c1e1bp@chr2:112043522..112043530, -
5.79e-79FFCP PHASE2:Hg19::chr1:110429102..110429103,+#_8cddd71bc9137c773fbe80ca70422721p@chr1:110429102..110429103, +
5.79e-79FFCP PHASE1:Hg19::chr1:110429102..110429103,+#_8cddd71bc9137c773fbe80ca70422721p@chr1:110429102..110429103, +
1.33e-65FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_224459c825ff8245403a990f781a39f4p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_224459c825ff8245403a990f781a39f4p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_224459c825ff8245403a990f781a39f4p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_224459c825ff8245403a990f781a39f4p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_224459c825ff8245403a990f781a39f4p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_224459c825ff8245403a990f781a39f4p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_224459c825ff8245403a990f781a39f4p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_224459c825ff8245403a990f781a39f4p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_224459c825ff8245403a990f781a39f4p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_224459c825ff8245403a990f781a39f4p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_224459c825ff8245403a990f781a39f4p5@Myl12b
1.33e-65FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_224459c825ff8245403a990f781a39f4p@chrX:160840025..160840037, +
2.21e-65FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_737a8fca3ad03046af0309014cc68aa1p1@ENSMUST00000150529
2.21e-65FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_737a8fca3ad03046af0309014cc68aa1p1@ENSMUST00000150529
3.28e-58FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_72b2d02aede20601dbbff13f78abe6e0p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_72b2d02aede20601dbbff13f78abe6e0p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_72b2d02aede20601dbbff13f78abe6e0p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_72b2d02aede20601dbbff13f78abe6e0p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_72b2d02aede20601dbbff13f78abe6e0p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_72b2d02aede20601dbbff13f78abe6e0p8@Vit
3.28e-58FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_72b2d02aede20601dbbff13f78abe6e0p@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_72b2d02aede20601dbbff13f78abe6e0p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_72b2d02aede20601dbbff13f78abe6e0p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_72b2d02aede20601dbbff13f78abe6e0p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_72b2d02aede20601dbbff13f78abe6e0p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_72b2d02aede20601dbbff13f78abe6e0p12@Gpr39
3.28e-58FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_72b2d02aede20601dbbff13f78abe6e0p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_72b2d02aede20601dbbff13f78abe6e0p@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_72b2d02aede20601dbbff13f78abe6e0p8@Vit
3.28e-58FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_72b2d02aede20601dbbff13f78abe6e0p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_72b2d02aede20601dbbff13f78abe6e0p12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_72b2d02aede20601dbbff13f78abe6e0p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_72b2d02aede20601dbbff13f78abe6e0p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_72b2d02aede20601dbbff13f78abe6e0p@chr17:14817013..14817022, -
1.26e-55FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_431360fbe643e45e20c395cde0be6491p@chr6:53359400..53359406, +
1.26e-55FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_431360fbe643e45e20c395cde0be6491p@chr6:53359400..53359406, +
4.9e-53FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_00d187047bebb153057200de385c7396p@chr17:29227828..29227839, -
4.9e-53FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_00d187047bebb153057200de385c7396p@chr10:67821185..67821217, -
4.9e-53FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_00d187047bebb153057200de385c7396p@chr14:24251717..24251731, +
4.9e-53FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_00d187047bebb153057200de385c7396p@chr10:67821185..67821217, -
4.9e-53FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_00d187047bebb153057200de385c7396p@chr7:91081998..91082010, -
4.9e-53FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_00d187047bebb153057200de385c7396p4@Il6st
4.9e-53FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_00d187047bebb153057200de385c7396p@chr7:91081998..91082010, -
4.9e-53FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_00d187047bebb153057200de385c7396p@chr10:67598037..67598049, -
4.9e-53FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_00d187047bebb153057200de385c7396p@chr2:113589030..113589077, -
4.9e-53FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_00d187047bebb153057200de385c7396p@chr17:29227828..29227839, -
4.9e-53FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_00d187047bebb153057200de385c7396p@chr14:24251717..24251731, +
4.9e-53FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_00d187047bebb153057200de385c7396p4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_00d187047bebb153057200de385c7396p@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_00d187047bebb153057200de385c7396p@chr2:113589030..113589077, -
4.9e-53FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_00d187047bebb153057200de385c7396p5@Npy1r
4.9e-53FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_00d187047bebb153057200de385c7396p5@Npy1r
7.35e-53FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_84311a3de4c5c226919f47d5c8b25bb2p11@Svep1
7.35e-53FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_84311a3de4c5c226919f47d5c8b25bb2p11@Svep1
1.1e-52FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_7491c67ee1f4e469955fbc1001d21d17p@chrX:160838787..160838800, +
1.1e-52FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_7491c67ee1f4e469955fbc1001d21d17p@chrX:160838787..160838800, +
1.65e-52FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_96ae99140b35bb31ce5271bd36d9253dp5@Phlda3
1.65e-52FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_96ae99140b35bb31ce5271bd36d9253dp5@Phlda3
5.51e-52FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_dbebaa93707af12fa29b2ac93efc2a73p@chr2:65009852..65009866, -
5.51e-52FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_dbebaa93707af12fa29b2ac93efc2a73p@chr2:65009852..65009866, -
1.18e-44FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_9baf97d2176d62816e6b12fbae721423p@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_9baf97d2176d62816e6b12fbae721423p@chr11:86417559..86417568, +
1.18e-44FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_9baf97d2176d62816e6b12fbae721423p10@Gpr39
1.18e-44FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_9baf97d2176d62816e6b12fbae721423p@chr2:178190136..178190151, +
1.18e-44FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_9baf97d2176d62816e6b12fbae721423p@chr17:14813242..14813246, -
1.18e-44FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_9baf97d2176d62816e6b12fbae721423p@chrX:160838683..160838694, +
1.18e-44FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_9baf97d2176d62816e6b12fbae721423p@chrX:160838683..160838694, +
1.18e-44FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_9baf97d2176d62816e6b12fbae721423p@chr13:119579287..119579292, +
1.18e-44FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_9baf97d2176d62816e6b12fbae721423p@chr11:86417559..86417568, +
1.18e-44FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_9baf97d2176d62816e6b12fbae721423p@chr17:14813242..14813246, -
1.18e-44FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_9baf97d2176d62816e6b12fbae721423p@chr2:178190136..178190151, +
1.18e-44FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_9baf97d2176d62816e6b12fbae721423p10@Gpr39
1.66e-44FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_842a8500495769afb61fb38470382f25p9@Fgf10
1.66e-44FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_842a8500495769afb61fb38470382f25p@chrX:160839663..160839673, +
1.66e-44FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_842a8500495769afb61fb38470382f25p@chrX:160839663..160839673, +
1.66e-44FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_842a8500495769afb61fb38470382f25p9@Fgf10
2.33e-44FFCP PHASE2:Mm9::chr17:75790300..75790304,+#_8db0bbb088e5380556a8ec987764ef62p@chr17:75790300..75790304, +
2.33e-44FFCP PHASE1:Mm9::chr17:75790300..75790304,+#_8db0bbb088e5380556a8ec987764ef62p@chr17:75790300..75790304, +
3.27e-44FFCP PHASE1:Mm9::chr1:127573708..127573719,+#_2fd689efeca6c022ff9b7c5b6dfff33dp9@Gpr39
3.27e-44FFCP PHASE2:Mm9::chr1:127573708..127573719,+#_2fd689efeca6c022ff9b7c5b6dfff33dp9@Gpr39
4.58e-44FFCP PHASE1:Mm9::chr17:14813991..14813999,+#_05324130f3620ca3cd5c0cb7c089f602p@chr17:14813991..14813999, +
4.58e-44FFCP PHASE2:Mm9::chr17:14813991..14813999,+#_05324130f3620ca3cd5c0cb7c089f602p@chr17:14813991..14813999, +