UBERON:0004786: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468 | |comment=The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468 | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004786 | |||
|is_a=UBERON:0000344 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON:0001555;;UBERON:0005409 | |name=gastrointestinal system mucosa | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0005409;;UBERON:0001555;;UBERON:0005409 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="digestive tract mucosa" EXACT [UBERON:cjm];;"gut mucosa" EXACT [BTO:0000546];;"gut mucuous membrane" EXACT [UBERON:cjm];;"mucosa of gut" EXACT [UBERON:cjm] | ||
|union_of= | |||
|xref=BTO:0000546;;MA:0001521;;SCTID:410433007 | |||
}} | }} | ||
Latest revision as of 17:48, 12 September 2014
| Name: | gastrointestinal system mucosa | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"digestive tract mucosa" EXACT [UBERON:cjm] "gut mucosa" EXACT [BTO:0000546] "gut mucuous membrane" EXACT [UBERON:cjm] "mucosa of gut" EXACT [UBERON:cjm] | ||
| Comments: | The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000344(mucosa) |
|---|---|
| part_of: | UBERON:0005409(gastrointestinal system),UBERON:0001555(digestive tract),UBERON:0005409(gastrointestinal system) |
Children
| is a: | UBERON:0001242 (intestinal mucosa) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
... further results Mouse (Mus musculus)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004786 (gastrointestinal system mucosa), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_d3798c87aa430c71cc32e9f5b6901c77 | p@chr9:35801527..35801540, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_d3798c87aa430c71cc32e9f5b6901c77 | p@chr9:35801527..35801540, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_d4e83fb1a4c70408d6d20d6269eb033b | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_d4e83fb1a4c70408d6d20d6269eb033b | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_d4e83fb1a4c70408d6d20d6269eb033b | p1@CYMP |
| 2.4e-66 | FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_d4e83fb1a4c70408d6d20d6269eb033b | p1@CYMP |
| 3.35e-66 | FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_b6ee81e0032eb8449f53c30cc2ef872f | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_b6ee81e0032eb8449f53c30cc2ef872f | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_b6ee81e0032eb8449f53c30cc2ef872f | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_b6ee81e0032eb8449f53c30cc2ef872f | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_b6ee81e0032eb8449f53c30cc2ef872f | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_b6ee81e0032eb8449f53c30cc2ef872f | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_b6ee81e0032eb8449f53c30cc2ef872f | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_b6ee81e0032eb8449f53c30cc2ef872f | p16@ACOT7 |
| 4.67e-66 | FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr11:89925073..89925074, + |
| 3.83e-60 | FFCP PHASE1:Mm9::chr16:30055801..30055806,+#_919ba689f5e240f0c2ddc60d67c99aad | p@chr16:30055801..30055806, + |
| 3.83e-60 | FFCP PHASE2:Mm9::chr16:30055801..30055806,+#_919ba689f5e240f0c2ddc60d67c99aad | p@chr16:30055801..30055806, + |
| 3.16e-55 | FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_2f6120dbc236728ea09cb51563b77b07 | p@chr3:122215917..122215967, - |
| 3.16e-55 | FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_2f6120dbc236728ea09cb51563b77b07 | p@chr3:122215917..122215967, - |
| 1.47e-53 | FFCP PHASE2:Mm9::chr18:75457242..75457248,+#_fba70f1a1bf89bb0996f32177c617dc0 | p@chr18:75457242..75457248, + |
| 1.47e-53 | FFCP PHASE1:Mm9::chr18:75457242..75457248,+#_fba70f1a1bf89bb0996f32177c617dc0 | p@chr18:75457242..75457248, + |
| 1.5e-53 | FFCP PHASE1:Mm9::chr5:135442349..135442362,-#_9e74221994d0efad15636b62102bb0ee | p@chr5:135442349..135442362, - |
| 1.5e-53 | FFCP PHASE2:Mm9::chr5:135442349..135442362,-#_9e74221994d0efad15636b62102bb0ee | p@chr5:135442349..135442362, - |
| 1.94e-53 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_17c32769b5e48649899063284ae10590 | p@chr8:122335239..122335244, + |
| 1.94e-53 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_17c32769b5e48649899063284ae10590 | p@chr8:122335239..122335244, + |
| 7.2e-52 | FFCP PHASE2:Mm9::chr18:61795043..61795050,-#_3a1bfb3fb118ed8549610a97a9a0ef58 | p@chr18:61795043..61795050, - |
| 7.2e-52 | FFCP PHASE1:Mm9::chr18:61795043..61795050,-#_3a1bfb3fb118ed8549610a97a9a0ef58 | p@chr18:61795043..61795050, - |
| 1.66e-51 | FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_d0a43ef7823338650b2e1fbde578b6fc | p4@Leng9 |
| 1.66e-51 | FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_d0a43ef7823338650b2e1fbde578b6fc | p4@Leng9 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:19661615..19661621,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr16:19661615..19661621, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127445866..127445873,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:127445866..127445873, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:63153941..63153942,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr11:63153941..63153942, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:65466889..65466894,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr12:65466889..65466894, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:77730114..77730120,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr12:77730114..77730120, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:2328652..2328660,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr10:2328652..2328660, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:19707156..19707203,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:19707156..19707203, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:76289395..76289406,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr14:76289395..76289406, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:78621016..78621042,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr1:78621016..78621042, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr15:60749901..60749904,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr15:60749901..60749904, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:87049573..87049608,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:87049573..87049608, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:148164872..148164919,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:148164872..148164919, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr18:53252911..53252918,-#_6ce11ad944ef09dc2085b91800f3a0ac | p106@TCF4 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:104674708..104674749,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:104674708..104674749, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:55344418..55344442,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr16:55344418..55344442, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:157174062..157174071,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr4:157174062..157174071, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128419359..128419367,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128419359..128419367, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:89797154..89797172,+#_6ce11ad944ef09dc2085b91800f3a0ac | p9@STEAP2 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:19522690..19522704,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr1:19522690..19522704, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:138064518..138064531,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:138064518..138064531, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:127711472..127711475,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:127711472..127711475, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128259602..128259609,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128259602..128259609, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:138064518..138064531,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:138064518..138064531, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:48703799..48703838,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr13:48703799..48703838, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:28541425..28541439,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr13:28541425..28541439, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr18:28720966..28720970,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr18:28720966..28720970, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:5491056..5491061,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:5491056..5491061, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:5491056..5491061,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:5491056..5491061, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:157174108..157174136,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr4:157174108..157174136, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:171088092..171088113,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:171088092..171088113, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:163338283..163338286,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr1:163338283..163338286, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:99661014..99661016,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr13:99661014..99661016, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:127681013..127681042, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:156822661..156822696,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:156822661..156822696, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:32790605..32790619,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr13:32790605..32790619, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:30499737..30499761,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:30499737..30499761, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:93128346..93128356,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr1:93128346..93128356, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:127445866..127445873, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:140054724..140054735,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:140054724..140054735, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128260156..128260173,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128260156..128260173, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:71222797..71222807,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr4:71222797..71222807, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:24797832..24797838,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:24797832..24797838, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128807259..128807281,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chrX:138909080..138909093,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chrX:138909080..138909093, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:8389087..8389116,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:8389087..8389116, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:8389087..8389116,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:8389087..8389116, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:53671764..53671771,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr16:53671764..53671771, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:159306961..159306975,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:159306961..159306975, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:57619538..57619575,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr5:57619538..57619575, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:87049573..87049608,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:87049573..87049608, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127449395..127449424,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:127449395..127449424, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:104674708..104674749, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr15:45950558..45950561,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr15:45950558..45950561, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:205036975..205037009,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:205036975..205037009, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:22850283..22850310,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr14:22850283..22850310, - |
