Personal tools

UBERON:0005062

From FANTOM5_SSTAR

Revision as of 08:50, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:neural fold
Namespace:FANTOM
Definition:"One of the two elevated edges of the neural groove." [GO:0001842, MP:0011256]
Xrefs:
links:

EHDAA2:0001249
EMAPA:16090
EMAPA:16093
EMAPA:16142
EMAPA:16146
EMAPA:16151
EMAPA:16155
EMAPA:16159
EMAPA:16162
EMAPA:16288
EMAPA:16292
EMAPA:16295
EMAPA:16299
EMAPA:16303
EMAPA:16307
EMAPA:16528
ncithesaurus:Neural_Fold
SCTID:361461009

XAO:0004087
Synonyms: "medullary fold" EXACT [MP:0011256]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005157(epithelial fold),UBERON:0005291(embryonic tissue),UBERON:0010371(ecto-epithelium),UBERON:0015212(lateral structure)
part_of:UBERON:0005061(neural groove)



Children

develops from:UBERON:0002342 (neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005062 (neural fold), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr6:52158594..52158603,-#_2183d21145d83f033bc6fe3d886546d1p@chr6:52158594..52158603, -
1.58e-86FFCP PHASE2:Mm9::chr6:52158594..52158603,-#_2183d21145d83f033bc6fe3d886546d1p@chr6:52158594..52158603, -
6.04e-65FFCP PHASE1:Mm9::chr4:152858080..152858084,-#_c98a7482381c21710a97d77c49c8509dp@chr4:152858080..152858084, -
6.04e-65FFCP PHASE2:Mm9::chr4:152858080..152858084,-#_c98a7482381c21710a97d77c49c8509dp@chr4:152858080..152858084, -
3.28e-58FFCP PHASE1:Mm9::chr7:143239748..143239753,+#_450610997606a29754f836706fcedf38p@chr7:143239748..143239753, +
3.28e-58FFCP PHASE2:Mm9::chr7:143239748..143239753,+#_450610997606a29754f836706fcedf38p@chr7:143239748..143239753, +
4.85e-45FFCP PHASE1:Hg19::chr7:25815812..25815822,-#_7e93110261fbea88139519d2789fd45ep@chr7:25815812..25815822, -
4.85e-45FFCP PHASE2:Hg19::chr7:25815812..25815822,-#_7e93110261fbea88139519d2789fd45ep@chr7:25815812..25815822, -
1.18e-44FFCP PHASE1:Mm9::chr1:88008549..88008559,-#_c2195ed5cfcb9f5dfcd9894799649826p4@Htr2b
1.18e-44FFCP PHASE2:Mm9::chr1:88008549..88008559,-#_c2195ed5cfcb9f5dfcd9894799649826p4@Htr2b
3.27e-44FFCP PHASE2:Mm9::chr2:74583733..74583738,+#_0e71ae69d924c7ae2780d5413b4751b0p13@Hoxd3
3.27e-44FFCP PHASE1:Mm9::chr2:74583733..74583738,+#_0e71ae69d924c7ae2780d5413b4751b0p13@Hoxd3
4.58e-44FFCP PHASE1:Mm9::chr13:96388617..96388624,-#_d69eb839e21d2282760ff96e101471fdp4@F2r
4.58e-44FFCP PHASE2:Mm9::chr13:96388617..96388624,-#_d69eb839e21d2282760ff96e101471fdp4@F2r
8.97e-44FFCP PHASE1:Mm9::chr5:88358803..88358820,+#_eefc8ea637ee652abcb6c81e482d65b4p@chr5:88358803..88358820, +
8.97e-44FFCP PHASE2:Mm9::chr5:88358803..88358820,+#_eefc8ea637ee652abcb6c81e482d65b4p@chr5:88358803..88358820, +
2.0e-40FFCP PHASE1:Hg19::chr12:3373147..3373149,-#_d1877c3a092dae037e124a76638e5127p@chr12:3373147..3373149, -
2.0e-40FFCP PHASE2:Hg19::chr12:3373147..3373149,-#_d1877c3a092dae037e124a76638e5127p@chr12:3373147..3373149, -
4.15e-39FFCP PHASE1:Mm9::chr11:4397590..4397595,-#_1c7c8e4b48ee0f166775eac97fe4d57ep@chr11:4397590..4397595, -
4.15e-39FFCP PHASE2:Mm9::chr11:4397590..4397595,-#_1c7c8e4b48ee0f166775eac97fe4d57ep@chr11:4397590..4397595, -
1.17e-38FFCP PHASE2:Mm9::chr9:35352286..35352290,-#_adea3989673dae1c6ecc9fe43c02f1acp@chr9:35352286..35352290, -
1.17e-38FFCP PHASE1:Mm9::chr9:35352286..35352290,-#_adea3989673dae1c6ecc9fe43c02f1acp@chr9:35352286..35352290, -
1.56e-38FFCP PHASE1:Mm9::chr15:102928215..102928218,-#_508ea92b2fcf0448dda1f92d5251f717p@chr15:102928215..102928218, -
1.56e-38FFCP PHASE2:Mm9::chr15:102928215..102928218,-#_508ea92b2fcf0448dda1f92d5251f717p@chr15:102928215..102928218, -
3.73e-38FFCP PHASE2:Mm9::chr11:96164868..96164875,+#_5d352036d56236bb60dc89e256e9c6e4p5@Hoxb5
3.73e-38FFCP PHASE1:Mm9::chr11:96164868..96164875,+#_5d352036d56236bb60dc89e256e9c6e4p5@Hoxb5
4.98e-38FFCP PHASE2:Mm9::chr11:96176093..96176104,+#_57f190e1e9b8a46e3db39403be13881dp@chr11:96176093..96176104, +
4.98e-38FFCP PHASE1:Mm9::chr11:96176093..96176104,+#_57f190e1e9b8a46e3db39403be13881dp@chr11:96176093..96176104, +
3.44e-36FFCP PHASE2:Hg19::chr1:20355975..20355980,-#_b68f99df4af80d5009bab829e24d7a3fp@chr1:20355975..20355980, -
3.44e-36FFCP PHASE1:Hg19::chr1:20355975..20355980,-#_b68f99df4af80d5009bab829e24d7a3fp@chr1:20355975..20355980, -
3.67e-34FFCP PHASE1:Mm9::chr8:11952680..11952690,+#_968e80964d8451bc0bcf8b2e65dc5220p@chr8:11952680..11952690, +
3.67e-34FFCP PHASE2:Mm9::chr8:11952680..11952690,+#_968e80964d8451bc0bcf8b2e65dc5220p@chr8:11952680..11952690, +
4.74e-34FFCP PHASE1:Mm9::chr16:5855821..5855836,+#_31996451fc5e30969f0dddffd2e2437ep@chr16:5855821..5855836, +
4.74e-34FFCP PHASE2:Mm9::chr16:5855821..5855836,+#_31996451fc5e30969f0dddffd2e2437ep@chr16:5855821..5855836, +
4.74e-34FFCP PHASE1:Mm9::chr10:90644180..90644195,-#_31996451fc5e30969f0dddffd2e2437ep@chr10:90644180..90644195, -
4.74e-34FFCP PHASE2:Mm9::chr10:90644180..90644195,-#_31996451fc5e30969f0dddffd2e2437ep@chr10:90644180..90644195, -
6.12e-34FFCP PHASE1:Mm9::chr2:31305411..31305419,+#_368de26215648397341725652ad8ab94p@chr2:31305411..31305419, +
6.12e-34FFCP PHASE2:Mm9::chr2:31305411..31305419,+#_368de26215648397341725652ad8ab94p@chr2:31305411..31305419, +
1.69e-33FFCP PHASE2:Mm9::chr16:5855860..5855872,+#_1d4f92395c7ede08f82c1de3f077a3d4p@chr16:5855860..5855872, +
1.69e-33FFCP PHASE1:Mm9::chr16:5855860..5855872,+#_1d4f92395c7ede08f82c1de3f077a3d4p@chr16:5855860..5855872, +
9.86e-33FFCP PHASE1:Mm9::chr12:88020400..88020411,+#_578bb9ff4d5b838a945c1fd59dff359fp@chr12:88020400..88020411, +
9.86e-33FFCP PHASE2:Mm9::chr12:88020400..88020411,+#_578bb9ff4d5b838a945c1fd59dff359fp@chr12:88020400..88020411, +
1.16e-30FFCP PHASE1:Mm9::chr6:52158693..52158704,-#_776544e849573dd5517daeafcfa0522dp3@Hoxa6
1.16e-30FFCP PHASE2:Mm9::chr6:52158693..52158704,-#_776544e849573dd5517daeafcfa0522dp3@Hoxa6
1.86e-30FFCP PHASE2:Hg19::chr1:237331032..237331036,+#_cf22a3406ecb74698dad9f51f7e9eec3p@chr1:237331032..237331036, +
1.86e-30FFCP PHASE1:Hg19::chr1:237331032..237331036,+#_cf22a3406ecb74698dad9f51f7e9eec3p@chr1:237331032..237331036, +
3.39e-30FFCP PHASE2:Hg19::chr13:111935498..111935509,+#_59cb68f180c14c798fdbebbce5483271p35@ARHGEF7
3.39e-30FFCP PHASE1:Hg19::chr13:111935498..111935509,+#_59cb68f180c14c798fdbebbce5483271p35@ARHGEF7
4.54e-30FFCP PHASE1:Mm9::chr11:113795301..113795315,+#_9ca5b8896612dd39e11a7e8db9bd4568p@chr11:113795301..113795315, +
4.54e-30FFCP PHASE1:Mm9::chr11:96168366..96168369,+#_9ca5b8896612dd39e11a7e8db9bd4568p@chr11:96168366..96168369, +
4.54e-30FFCP PHASE2:Mm9::chr11:113795301..113795315,+#_9ca5b8896612dd39e11a7e8db9bd4568p@chr11:113795301..113795315, +
4.54e-30FFCP PHASE2:Mm9::chr11:96168366..96168369,+#_9ca5b8896612dd39e11a7e8db9bd4568p@chr11:96168366..96168369, +
5.61e-30FFCP PHASE1:Mm9::chr14:20570183..20570190,+#_1b051009682560f29a71970c56144569p3@Nid2
5.61e-30FFCP PHASE2:Mm9::chr14:20570183..20570190,+#_1b051009682560f29a71970c56144569p3@Nid2
5.7e-30FFCP PHASE2:Mm9::chr8:11782453..11782481,+#_5cbf9ae44585aafc6fe0d21311a43c1cp25@Arhgef7
5.7e-30FFCP PHASE1:Mm9::chr8:11782453..11782481,+#_5cbf9ae44585aafc6fe0d21311a43c1cp25@Arhgef7
7.14e-30FFCP PHASE1:Mm9::chr7:98820891..98820900,+#_0fdf1130cb4347807556dcda98dd11d2p34@Dlg2
7.14e-30FFCP PHASE2:Mm9::chr7:98820891..98820900,+#_0fdf1130cb4347807556dcda98dd11d2p34@Dlg2
1.12e-29FFCP PHASE2:Mm9::chr6:118116455..118116458,-#_d36bc8e4a9b2dceed4d75d1e8b1a65a5p@chr6:118116455..118116458, -
1.12e-29FFCP PHASE1:Mm9::chr6:118116455..118116458,-#_d36bc8e4a9b2dceed4d75d1e8b1a65a5p@chr6:118116455..118116458, -
1.4e-29FFCP PHASE1:Mm9::chr2:119624214..119624225,+#_d1bd9af705b5b7d8771263caf11f3510p7@Tyro3
1.4e-29FFCP PHASE2:Mm9::chr2:119624214..119624225,+#_d1bd9af705b5b7d8771263caf11f3510p7@Tyro3
1.54e-29FFCP PHASE2:Mm9::chr5:88358878..88358890,+#_e6fdc0f3cab4a9beab9187095e7ba325p@chr5:88358878..88358890, +
1.54e-29FFCP PHASE1:Mm9::chr1:88007341..88007350,-#_e6fdc0f3cab4a9beab9187095e7ba325p7@Htr2b
1.54e-29FFCP PHASE2:Mm9::chr1:88007341..88007350,-#_e6fdc0f3cab4a9beab9187095e7ba325p7@Htr2b
1.54e-29FFCP PHASE1:Mm9::chr5:88358878..88358890,+#_e6fdc0f3cab4a9beab9187095e7ba325p@chr5:88358878..88358890, +
2.19e-29FFCP PHASE1:Mm9::chr15:90848413..90848436,-#_0e0e7397ffeb3d26c425842da9b34897p@chr15:90848413..90848436, -
2.19e-29FFCP PHASE2:Mm9::chr15:90848413..90848436,-#_0e0e7397ffeb3d26c425842da9b34897p@chr15:90848413..90848436, -
3.42e-29FFCP PHASE1:Mm9::chr9:20777404..20777418,+#_9ddbfee47b085f9f529feb1a7f9de182p@chr9:20777404..20777418, +
3.42e-29FFCP PHASE2:Mm9::chr9:20777404..20777418,+#_9ddbfee47b085f9f529feb1a7f9de182p@chr9:20777404..20777418, +
7.38e-28FFCP PHASE1:Mm9::chr6:52134126..52134150,-#_0e77e68fd0d95e11b00f72ecb3f8d26fp3@Hoxa3
7.38e-28FFCP PHASE2:Mm9::chr6:52134126..52134150,-#_0e77e68fd0d95e11b00f72ecb3f8d26fp3@Hoxa3
9.07e-28FFCP PHASE1:Mm9::chr11:106874215..106874219,+#_cca24e44d893fb8ba5bb9a9e6e115de6p@chr11:106874215..106874219, +
9.07e-28FFCP PHASE2:Mm9::chr11:106874215..106874219,+#_cca24e44d893fb8ba5bb9a9e6e115de6p@chr11:106874215..106874219, +
1.11e-27FFCP PHASE1:Mm9::chr5:46030754..46030764,-#_bec7bbb52a3a48a0b1ca5cefcc2cd8eep9@Fam184b
1.11e-27FFCP PHASE2:Mm9::chr5:46030754..46030764,-#_bec7bbb52a3a48a0b1ca5cefcc2cd8eep9@Fam184b
1.37e-27FFCP PHASE2:Mm9::chr11:96175972..96175978,+#_1b0eee42c0e58ade05fd667c669d9261p@chr11:96175972..96175978, +
1.37e-27FFCP PHASE1:Mm9::chr11:96175972..96175978,+#_1b0eee42c0e58ade05fd667c669d9261p@chr11:96175972..96175978, +
2.06e-27FFCP PHASE1:Mm9::chr5:67486110..67486118,-#_0625450bc171eb8bba6bdd9b0fbd72b6p@chr5:67486110..67486118, -
2.06e-27FFCP PHASE2:Mm9::chr5:67486110..67486118,-#_0625450bc171eb8bba6bdd9b0fbd72b6p@chr5:67486110..67486118, -
2.72e-27FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_57f177e1b9a2dcb1a2626869186396adp9@NPPA
2.72e-27FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_57f177e1b9a2dcb1a2626869186396adp9@NPPA
2.72e-27FFCP PHASE2:Hg19::chr2:18116344..18116353,+#_57f177e1b9a2dcb1a2626869186396adp@chr2:18116344..18116353, +
2.72e-27FFCP PHASE2:Hg19::chr6:6739548..6739577,-#_57f177e1b9a2dcb1a2626869186396adp@chr6:6739548..6739577, -
2.72e-27FFCP PHASE1:Hg19::chr2:18116344..18116353,+#_57f177e1b9a2dcb1a2626869186396adp@chr2:18116344..18116353, +
2.72e-27FFCP PHASE1:Hg19::chr6:6739548..6739577,-#_57f177e1b9a2dcb1a2626869186396adp@chr6:6739548..6739577, -
2.72e-27FFCP PHASE1:Hg19::chr17:39023189..39023197,-#_57f177e1b9a2dcb1a2626869186396adp2@KRT12
2.72e-27FFCP PHASE2:Hg19::chr17:39023189..39023197,-#_57f177e1b9a2dcb1a2626869186396adp2@KRT12
5.7e-27FFCP PHASE1:Mm9::chr1:65358027..65358031,+#_9eff91cd1296314b3f451ba1d1f8859bp1@Pth2r
5.7e-27FFCP PHASE2:Mm9::chr1:65358027..65358031,+#_9eff91cd1296314b3f451ba1d1f8859bp1@Pth2r
8.55e-27FFCP PHASE1:Mm9::chr3:59108872..59108875,+#_19f20a0ccc3c3082299fcaaffee3389ap@chr3:59108872..59108875, +
8.55e-27FFCP PHASE2:Mm9::chr3:59108872..59108875,+#_19f20a0ccc3c3082299fcaaffee3389ap@chr3:59108872..59108875, +
1.84e-26FFCP PHASE2:Hg19::chr11:46337652..46337682,+#_b76838f781ec6a3c22fce24f16aac0e6p16@CREB3L1
1.84e-26FFCP PHASE1:Hg19::chr11:46337652..46337682,+#_b76838f781ec6a3c22fce24f16aac0e6p16@CREB3L1
3.49e-26FFCP PHASE2:Mm9::chr1:94648758..94648763,+#_ac860fa124e4619b26a96375641e7d1dp@chr1:94648758..94648763, +
3.49e-26FFCP PHASE1:Mm9::chr1:94648758..94648763,+#_ac860fa124e4619b26a96375641e7d1dp@chr1:94648758..94648763, +
3.6e-26FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_7b93a786fcb0ff47e761ea34323c4a4bp@chrX:112324334..112324339, -
3.6e-26FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_7b93a786fcb0ff47e761ea34323c4a4bp@chrX:112324334..112324339, -
4.66e-26FFCP PHASE1:Hg19::chr2:220491902..220491915,+#_31355b76db81768528f65b7976740c72p11@SLC4A3
4.66e-26FFCP PHASE2:Hg19::chr2:220491902..220491915,+#_31355b76db81768528f65b7976740c72p11@SLC4A3