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{{UBERON
{{UBERON
|id=UBERON:0005311
|alt_id=
|name=mammary placode
|namespace=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|xref=
|is_a=UBERON:0005085
|synonym=
|comment=TODO develops_from
|comment=TODO develops_from
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0008425
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005311
|is_a=UBERON:0011814
|is_obsolete=
|located_in=
|located_in=
|name=mammary placode
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:mammary placode
Namespace:FANTOM
Definition:"The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
Comments:TODO develops_from

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011814(non-neurogenic ectodermal placode)
develops_from:UBERON:0008425(mammary ridge)



Children

develops from:UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005311 (mammary placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
1.87e-86FFCP PHASE2:Mm9::chr5:88215663..88215674,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215663..88215674, +
1.87e-86FFCP PHASE1:Mm9::chr8:39536780..39536784,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:39536780..39536784, -
1.87e-86FFCP PHASE2:Mm9::chr4:116740698..116740723,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:116740698..116740723, +
1.87e-86FFCP PHASE1:Mm9::chr5:88217723..88217733,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217723..88217733, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121676..88121704,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121676..88121704, -
1.87e-86FFCP PHASE2:Mm9::chr5:88359009..88359014,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88359009..88359014, -
1.87e-86FFCP PHASE1:Mm9::chr6:104295805..104295814,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:104295805..104295814, +
1.87e-86FFCP PHASE1:Mm9::chr5:88125078..88125099,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88125078..88125099, -
1.87e-86FFCP PHASE1:Mm9::chr11:121057666..121057669,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:121057666..121057669, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393258..103393296,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393258..103393296, +
1.87e-86FFCP PHASE2:Mm9::chr5:88100053..88100078,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100053..88100078, -
1.87e-86FFCP PHASE2:Mm9::chr10:100283528..100283529,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:100283528..100283529, +
1.87e-86FFCP PHASE1:Mm9::chr5:88206236..88206252,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88206236..88206252, +
1.87e-86FFCP PHASE1:Mm9::chr5:88095990..88096001,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88095990..88096001, +
1.87e-86FFCP PHASE1:Mm9::chr15:98557870..98557874,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98557870..98557874, -
1.87e-86FFCP PHASE2:Mm9::chr11:48162734..48162736,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:48162734..48162736, -
1.87e-86FFCP PHASE1:Mm9::chr4:118637931..118637942,+#_30b6d7c8bf53f346980477d3b2cc2429p7@Lao1
1.87e-86FFCP PHASE2:Mm9::chr15:15105208..15105219,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:15105208..15105219, -
1.87e-86FFCP PHASE2:Mm9::chr5:88121763..88121767,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121763..88121767, -
1.87e-86FFCP PHASE1:Mm9::chr5:88215632..88215662,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215632..88215662, +
1.87e-86FFCP PHASE1:Mm9::chr5:88107092..88107108,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88107092..88107108, -
1.87e-86FFCP PHASE1:Mm9::chr19:4104421..4104423,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr19:4104421..4104423, +
1.87e-86FFCP PHASE1:Mm9::chr10:46245998..46245999,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:46245998..46245999, +
1.87e-86FFCP PHASE2:Mm9::chr2:140424221..140424232,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:140424221..140424232, +
1.87e-86FFCP PHASE1:Mm9::chr7:112544745..112544756,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:112544745..112544756, -
1.87e-86FFCP PHASE1:Mm9::chr4:62394478..62394481,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:62394478..62394481, -
1.87e-86FFCP PHASE1:Mm9::chr15:15105208..15105219,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:15105208..15105219, -
1.87e-86FFCP PHASE2:Mm9::chr5:88124293..88124295,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88124293..88124295, -
1.87e-86FFCP PHASE1:Mm9::chr5:88358983..88358986,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358983..88358986, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123793..88123819,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123793..88123819, +
1.87e-86FFCP PHASE2:Mm9::chr5:88096251..88096262,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88096251..88096262, +
1.87e-86FFCP PHASE1:Mm9::chr5:38893329..38893340,-#_30b6d7c8bf53f346980477d3b2cc2429p8@Slc2a9
1.87e-86FFCP PHASE1:Mm9::chr4:118627429..118627443,-#_30b6d7c8bf53f346980477d3b2cc2429p1@ENSMUST00000155069, p1@uc008ulc.1
1.87e-86FFCP PHASE2:Mm9::chr9:77686699..77686701,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686699..77686701, +
1.87e-86FFCP PHASE2:Mm9::chr5:88210886..88210920,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210886..88210920, -
1.87e-86FFCP PHASE2:Mm9::chr8:8021158..8021161,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:8021158..8021161, -
1.87e-86FFCP PHASE1:Mm9::chr5:88210852..88210888,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210852..88210888, +
1.87e-86FFCP PHASE1:Mm9::chr5:88103101..88103120,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103101..88103120, -
1.87e-86FFCP PHASE1:Mm9::chr19:17975686..17975688,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr19:17975686..17975688, -
1.87e-86FFCP PHASE2:Mm9::chr5:88356056..88356074,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88356056..88356074, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393703..103393706,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393703..103393706, -
1.87e-86FFCP PHASE2:Mm9::chr4:118627452..118627463,-#_30b6d7c8bf53f346980477d3b2cc2429p2@ENSMUST00000155069, p2@uc008ulc.1
1.87e-86FFCP PHASE2:Mm9::chr8:67022646..67022651,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:67022646..67022651, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358835..88358840,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358835..88358840, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123674..88123680,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123674..88123680, -
1.87e-86FFCP PHASE2:Mm9::chr4:118640438..118640443,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640438..118640443, +
1.87e-86FFCP PHASE1:Mm9::chr5:151567427..151567434,+#_30b6d7c8bf53f346980477d3b2cc2429p10@Pds5b
1.87e-86FFCP PHASE2:Mm9::chr5:88209128..88209157,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209128..88209157, +
1.87e-86FFCP PHASE1:Mm9::chr11:6536708..6536724,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6536708..6536724, +
1.87e-86FFCP PHASE2:Mm9::chr15:103393812..103393824,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393812..103393824, -
1.87e-86FFCP PHASE2:Mm9::chr5:88108071..88108075,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88108071..88108075, -
1.87e-86FFCP PHASE1:Mm9::chr18:6733891..6733896,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733891..6733896, +
1.87e-86FFCP PHASE2:Mm9::chr4:62394478..62394481,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:62394478..62394481, -
1.87e-86FFCP PHASE2:Mm9::chr5:88217642..88217646,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217642..88217646, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393256..103393264,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393256..103393264, -
1.87e-86FFCP PHASE2:Mm9::chr11:6535581..6535586,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535581..6535586, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123649..88123664,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123649..88123664, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123526..88123536,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123526..88123536, +
1.87e-86FFCP PHASE1:Mm9::chr11:100614219..100614221,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:100614219..100614221, -
1.87e-86FFCP PHASE2:Mm9::chr5:88204836..88204843,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204836..88204843, +
1.87e-86FFCP PHASE2:Mm9::chr14:30342837..30342838,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr14:30342837..30342838, -
1.87e-86FFCP PHASE1:Mm9::chr5:88127079..88127081,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88127079..88127081, -
1.87e-86FFCP PHASE1:Mm9::chr2:151795763..151795765,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:151795763..151795765, +
1.87e-86FFCP PHASE2:Mm9::chr15:103393361..103393372,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393361..103393372, -
1.87e-86FFCP PHASE2:Mm9::chr5:88103215..88103245,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103215..88103245, +
1.87e-86FFCP PHASE2:Mm9::chr9:107419666..107419669,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:107419666..107419669, -
1.87e-86FFCP PHASE1:Mm9::chr9:77686637..77686644,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686637..77686644, +
1.87e-86FFCP PHASE1:Mm9::chr5:88209021..88209051,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209021..88209051, +
1.87e-86FFCP PHASE1:Mm9::chr5:88098006..88098035,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88098006..88098035, +
1.87e-86FFCP PHASE1:Mm9::chr1:23404398..23404401,-#_30b6d7c8bf53f346980477d3b2cc2429p1@uc007amc.1
1.87e-86FFCP PHASE1:Mm9::chr4:118641223..118641237,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118641223..118641237, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123539..88123551,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123539..88123551, +
1.87e-86FFCP PHASE1:Mm9::chr5:88215700..88215705,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215700..88215705, +
1.87e-86FFCP PHASE1:Mm9::chr5:88109913..88109924,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109913..88109924, -
1.87e-86FFCP PHASE2:Mm9::chr18:6733951..6733958,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733951..6733958, +
1.87e-86FFCP PHASE2:Mm9::chr13:23550306..23550308,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr13:23550306..23550308, -
1.87e-86FFCP PHASE2:Mm9::chr2:28416848..28416860,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:28416848..28416860, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358934..88358941,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358934..88358941, +
1.87e-86FFCP PHASE2:Mm9::chr18:27904115..27904120,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:27904115..27904120, +
1.87e-86FFCP PHASE2:Mm9::chr5:88126303..88126323,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88126303..88126323, -
1.87e-86FFCP PHASE1:Mm9::chr5:88361418..88361423,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88361418..88361423, +
1.87e-86FFCP PHASE1:Mm9::chr19:56051165..56051186,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr19:56051165..56051186, +
1.87e-86FFCP PHASE2:Mm9::chr5:88098535..88098555,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88098535..88098555, +
1.87e-86FFCP PHASE2:Mm9::chr5:53448964..53448972,+#_30b6d7c8bf53f346980477d3b2cc2429p4@Slc34a2
1.87e-86FFCP PHASE1:Mm9::chr4:118634471..118634476,+#_30b6d7c8bf53f346980477d3b2cc2429p9@Lao1
1.87e-86FFCP PHASE1:Mm9::chr15:98312638..98312662,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98312638..98312662, -
1.87e-86FFCP PHASE2:Mm9::chr15:98312638..98312662,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98312638..98312662, -
1.87e-86FFCP PHASE2:Mm9::chr1:40637185..40637194,+#_30b6d7c8bf53f346980477d3b2cc2429p6@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr5:88214331..88214347,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88214331..88214347, -
1.87e-86FFCP PHASE2:Mm9::chr12:52131128..52131133,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:52131128..52131133, -
1.87e-86FFCP PHASE2:Mm9::chr5:88109964..88109969,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109964..88109969, -
1.87e-86FFCP PHASE1:Mm9::chr5:88213608..88213623,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88213608..88213623, -
1.87e-86FFCP PHASE1:Mm9::chr5:88106054..88106056,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88106054..88106056, +
1.87e-86FFCP PHASE1:Mm9::chr1:40637208..40637219,+#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr18:6595472..6595477,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6595472..6595477, -
1.87e-86FFCP PHASE1:Mm9::chr8:98629001..98629006,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:98629001..98629006, +

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