Personal tools

UBERON:0005311

From FANTOM5_SSTAR

Revision as of 13:39, 27 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:mammary placode
Definition:"The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
Comments:TODO develops_from

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005085(ectodermal placode)
develops_from:UBERON:0008425(mammary ridge)



Children

develops from:UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005311 (mammary placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
1.87e-86FFCP PHASE1:Mm9::chr15:103393227..103393240,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393227..103393240, -
1.87e-86FFCP PHASE2:Mm9::chr5:88125078..88125099,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88125078..88125099, -
1.87e-86FFCP PHASE1:Mm9::chr5:88240375..88240378,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88240375..88240378, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121858..88121866,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121858..88121866, -
1.87e-86FFCP PHASE2:Mm9::chr5:88096268..88096283,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88096268..88096283, +
1.87e-86FFCP PHASE1:Mm9::chr3:155015789..155015791,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:155015789..155015791, -
1.87e-86FFCP PHASE2:Mm9::chr15:98311094..98311111,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98311094..98311111, -
1.87e-86FFCP PHASE2:Mm9::chr5:88213564..88213565,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88213564..88213565, +
1.87e-86FFCP PHASE1:Mm9::chr5:88126303..88126323,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88126303..88126323, -
1.87e-86FFCP PHASE1:Mm9::chr11:48162734..48162736,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:48162734..48162736, -
1.87e-86FFCP PHASE2:Mm9::chr4:43404975..43404982,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:43404975..43404982, +
1.87e-86FFCP PHASE2:Mm9::chr5:88121815..88121823,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121815..88121823, -
1.87e-86FFCP PHASE2:Mm9::chr8:52461156..52461158,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:52461156..52461158, +
1.87e-86FFCP PHASE1:Mm9::chr5:88207974..88207986,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88207974..88207986, +
1.87e-86FFCP PHASE1:Mm9::chr5:88097629..88097633,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88097629..88097633, +
1.87e-86FFCP PHASE1:Mm9::chr1:193093195..193093197,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:193093195..193093197, -
1.87e-86FFCP PHASE1:Mm9::chr18:6733777..6733786,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733777..6733786, +
1.87e-86FFCP PHASE2:Mm9::chr5:88358889..88358911,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358889..88358911, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123793..88123819,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123793..88123819, +
1.87e-86FFCP PHASE2:Mm9::chr4:118634204..118634217,+#_30b6d7c8bf53f346980477d3b2cc2429p3@Lao1
1.87e-86FFCP PHASE1:Mm9::chr5:88215680..88215714,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215680..88215714, -
1.87e-86FFCP PHASE1:Mm9::chr5:88109869..88109894,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109869..88109894, +
1.87e-86FFCP PHASE2:Mm9::chr4:118640598..118640603,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640598..118640603, -
1.87e-86FFCP PHASE1:Mm9::chr16:93598605..93598606,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr16:93598605..93598606, -
1.87e-86FFCP PHASE2:Mm9::chr5:88209161..88209183,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209161..88209183, -
1.87e-86FFCP PHASE2:Mm9::chr16:93598605..93598606,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr16:93598605..93598606, -
1.87e-86FFCP PHASE1:Mm9::chr5:88359113..88359133,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88359113..88359133, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123891..88123910,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123891..88123910, +
1.87e-86FFCP PHASE2:Mm9::chr3:155015789..155015791,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:155015789..155015791, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393830..103393851,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393830..103393851, +
1.87e-86FFCP PHASE2:Mm9::chr5:88109040..88109079,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109040..88109079, +
1.87e-86FFCP PHASE1:Mm9::chr4:118634330..118634340,+#_30b6d7c8bf53f346980477d3b2cc2429p4@Lao1
1.87e-86FFCP PHASE1:Mm9::chr15:98312614..98312624,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98312614..98312624, -
1.87e-86FFCP PHASE1:Mm9::chr6:51296751..51296773,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:51296751..51296773, -
1.87e-86FFCP PHASE1:Mm9::chr4:118640761..118640774,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640761..118640774, +
1.87e-86FFCP PHASE1:Mm9::chr5:88213579..88213594,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88213579..88213594, +
1.87e-86FFCP PHASE1:Mm9::chr5:88104060..88104087,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88104060..88104087, -
1.87e-86FFCP PHASE1:Mm9::chr1:40637185..40637194,+#_30b6d7c8bf53f346980477d3b2cc2429p6@Slc9a4
1.87e-86FFCP PHASE1:Mm9::chr7:109210996..109211006,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:109210996..109211006, -
1.87e-86FFCP PHASE1:Mm9::chr2:93360875..93360880,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:93360875..93360880, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393812..103393824,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393812..103393824, -
1.87e-86FFCP PHASE2:Mm9::chr3:79647358..79647364,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:79647358..79647364, -
1.87e-86FFCP PHASE1:Mm9::chr5:88358893..88358897,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358893..88358897, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123708..88123719,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123708..88123719, -
1.87e-86FFCP PHASE2:Mm9::chr11:109658667..109658675,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109658667..109658675, -
1.87e-86FFCP PHASE2:Mm9::chr5:88103244..88103281,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103244..88103281, -
1.87e-86FFCP PHASE2:Mm9::chr2:164568599..164568608,-#_30b6d7c8bf53f346980477d3b2cc2429p8@Wfdc3
1.87e-86FFCP PHASE2:Mm9::chr8:47396093..47396097,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:47396093..47396097, +
1.87e-86FFCP PHASE2:Mm9::chr15:81082279..81082303,-#_30b6d7c8bf53f346980477d3b2cc2429p1@uc007wwj.1
1.87e-86FFCP PHASE2:Mm9::chr5:88217649..88217662,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217649..88217662, -
1.87e-86FFCP PHASE1:Mm9::chr6:137412973..137412974,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:137412973..137412974, +
1.87e-86FFCP PHASE1:Mm9::chr4:118636395..118636401,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118636395..118636401, +
1.87e-86FFCP PHASE2:Mm9::chr11:6535604..6535612,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535604..6535612, +
1.87e-86FFCP PHASE2:Mm9::chr7:75913214..75913218,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:75913214..75913218, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123674..88123680,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123674..88123680, -
1.87e-86FFCP PHASE2:Mm9::chr2:28418029..28418047,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:28418029..28418047, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393352..103393360,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393352..103393360, -
1.87e-86FFCP PHASE2:Mm9::chr5:88127079..88127081,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88127079..88127081, -
1.87e-86FFCP PHASE1:Mm9::chr5:88357286..88357299,+#_30b6d7c8bf53f346980477d3b2cc2429p4@Csn3
1.87e-86FFCP PHASE1:Mm9::chr5:88123593..88123599,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123593..88123599, -
1.87e-86FFCP PHASE1:Mm9::chr12:52131163..52131171,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:52131163..52131171, -
1.87e-86FFCP PHASE2:Mm9::chr5:88098560..88098587,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88098560..88098587, -
1.87e-86FFCP PHASE1:Mm9::chr3:25229830..25229833,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:25229830..25229833, +
1.87e-86FFCP PHASE2:Mm9::chr1:40637208..40637219,+#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr6:104295805..104295814,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:104295805..104295814, +
1.87e-86FFCP PHASE2:Mm9::chr5:88215607..88215628,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215607..88215628, +
1.87e-86FFCP PHASE1:Mm9::chr5:88204324..88204334,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204324..88204334, +
1.87e-86FFCP PHASE1:Mm9::chr1:139647999..139648007,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:139647999..139648007, -
1.87e-86FFCP PHASE1:Mm9::chr11:6535539..6535544,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535539..6535544, -
1.87e-86FFCP PHASE2:Mm9::chr7:35963309..35963311,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:35963309..35963311, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123555..88123565,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123555..88123565, -
1.87e-86FFCP PHASE1:Mm9::chr5:88209177..88209180,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209177..88209180, +
1.87e-86FFCP PHASE1:Mm9::chr5:88100023..88100041,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100023..88100041, +
1.87e-86FFCP PHASE2:Mm9::chr7:112544693..112544699,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:112544693..112544699, -
1.87e-86FFCP PHASE1:Mm9::chr5:88217723..88217733,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217723..88217733, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121676..88121704,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121676..88121704, -
1.87e-86FFCP PHASE2:Mm9::chr19:17975686..17975688,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr19:17975686..17975688, -
1.87e-86FFCP PHASE2:Mm9::chr18:81785997..81786001,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:81785997..81786001, -
1.87e-86FFCP PHASE2:Mm9::chr9:55158428..55158429,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:55158428..55158429, +
1.87e-86FFCP PHASE2:Mm9::chr9:77686637..77686644,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686637..77686644, +
1.87e-86FFCP PHASE2:Mm9::chr5:88210841..88210848,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210841..88210848, +
1.87e-86FFCP PHASE2:Mm9::chr5:151567394..151567401,+#_30b6d7c8bf53f346980477d3b2cc2429p9@Pds5b
1.87e-86FFCP PHASE1:Mm9::chr6:104295805..104295814,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:104295805..104295814, +
1.87e-86FFCP PHASE1:Mm9::chr5:88125078..88125099,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88125078..88125099, -
1.87e-86FFCP PHASE1:Mm9::chr11:121057666..121057669,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:121057666..121057669, -
1.87e-86FFCP PHASE2:Mm9::chr4:40836029..40836032,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:40836029..40836032, +
1.87e-86FFCP PHASE2:Mm9::chr12:52131163..52131171,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:52131163..52131171, -
1.87e-86FFCP PHASE2:Mm9::chr5:88111209..88111249,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88111209..88111249, +
1.87e-86FFCP PHASE1:Mm9::chr5:88206236..88206252,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88206236..88206252, +
1.87e-86FFCP PHASE1:Mm9::chr5:88095990..88096001,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88095990..88096001, +
1.87e-86FFCP PHASE1:Mm9::chr15:98557870..98557874,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98557870..98557874, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358825..88358828,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358825..88358828, +
1.87e-86FFCP PHASE1:Mm9::chr8:39536780..39536784,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:39536780..39536784, -
1.87e-86FFCP PHASE2:Mm9::chr10:69144379..69144384,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:69144379..69144384, +
1.87e-86FFCP PHASE1:Mm9::chr5:88215632..88215662,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215632..88215662, +
1.87e-86FFCP PHASE1:Mm9::chr5:88107092..88107108,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88107092..88107108, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005311&oldid=1837908"