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UBERON:0005870: Difference between revisions

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Revision as of 17:23, 15 June 2012

Name:olfactory pit
Definition:"By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[WP]. an indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]." [GO:0060166, Wikipedia:Olfactory_pit]
Xrefs:
links:

AAO:0011068
EFO:0003496
EHDAA:4772
EHDAA2:0001295
EMAPA:16800
SCTID:361485001

XAO:0000275
Synonyms: "nasal pit" EXACT [XAO:0000275]
Comments:we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003050(olfactory placode)
part_of:UBERON:0000922(embryo)



Children

develops from:UBERON:0001707 (nasal cavity)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005870 (olfactory pit), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results