Personal tools

UBERON:0005904: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005904
|alt_id=
|name=duct of male reproductive system
|namespace=
|def=
|xref=
|is_a=UBERON:0000058;;UBERON:0005156
|synonym=
|comment=groups the individual ducts in a variety of species
|comment=groups the individual ducts in a variety of species
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=grouping_class
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005904
|is_a=UBERON:0000058 ;;UBERON:0005156 ;;UBERON:0014403
|is_obsolete=
|located_in=
|located_in=
|name=duct of male reproductive system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000079
|part_of=UBERON:0000079
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:55, 12 September 2014

Name:duct of male reproductive system
Namespace:FANTOM
Comments:groups the individual ducts in a variety of species
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000058(duct),UBERON:0005156(reproductive structure),UBERON:0014403(male anatomical structure)
part_of:UBERON:0000079(male reproductive system)



Children

is a:UBERON:0001000 (vas deferens),UBERON:0001301 (epididymis),UBERON:0001343 (seminiferous tubule of testis),UBERON:0006947 (male genital duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005904 (duct of male reproductive system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.94e-147FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_c38747dd6812763f8872ffe5ad95553ep1@LCN9
6.94e-147FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:125617607..125617617, +
6.94e-147FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_c38747dd6812763f8872ffe5ad95553ep@chr3:140961228..140961237, +
6.94e-147FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_c38747dd6812763f8872ffe5ad95553ep3@EDDM3A
6.94e-147FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:125618661..125618677, +
6.94e-147FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_c38747dd6812763f8872ffe5ad95553ep2@PATE2
6.94e-147FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_c38747dd6812763f8872ffe5ad95553ep@chr15:25165150..25165161, +
6.94e-147FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_c38747dd6812763f8872ffe5ad95553ep1@LCN9
6.94e-147FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:69950851..69950887, +
6.94e-147FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_c38747dd6812763f8872ffe5ad95553ep@chr14:105935020..105935028, -
6.94e-147FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_c38747dd6812763f8872ffe5ad95553ep3@EDDM3A
6.94e-147FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:125617636..125617646, +
6.94e-147FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_c38747dd6812763f8872ffe5ad95553ep@chrX:112044378..112044412, -
6.94e-147FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_c38747dd6812763f8872ffe5ad95553ep@chr11:125618739..125618756, -
6.94e-147FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_c38747dd6812763f8872ffe5ad95553ep3@PATE2
6.94e-147FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_c38747dd6812763f8872ffe5ad95553ep2@PATE1
6.94e-147FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_c38747dd6812763f8872ffe5ad95553ep@chr15:25165150..25165161, +
6.94e-147FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_c38747dd6812763f8872ffe5ad95553ep@chrX:112044378..112044412, -
6.94e-147FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:125617607..125617617, +
6.94e-147FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_c38747dd6812763f8872ffe5ad95553ep@chr14:105935020..105935028, -
6.94e-147FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:125618495..125618517, +
6.94e-147FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:69950851..69950887, +
6.94e-147FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_c38747dd6812763f8872ffe5ad95553ep2@PATE2
6.94e-147FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:69951723..69951737, +
6.94e-147FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_c38747dd6812763f8872ffe5ad95553ep2@EDDM3A
6.94e-147FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:125617636..125617646, +
6.94e-147FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:125618661..125618677, +
6.94e-147FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_c38747dd6812763f8872ffe5ad95553ep2@EDDM3A
6.94e-147FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_c38747dd6812763f8872ffe5ad95553ep3@PATE2
6.94e-147FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_c38747dd6812763f8872ffe5ad95553ep2@PATE1
6.94e-147FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:125618495..125618517, +
6.94e-147FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_c38747dd6812763f8872ffe5ad95553ep@chr11:125618739..125618756, -
6.94e-147FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_c38747dd6812763f8872ffe5ad95553ep@chr3:140961228..140961237, +
6.94e-147FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_c38747dd6812763f8872ffe5ad95553ep@chr11:69951723..69951737, +
8.91e-111FFCP PHASE1:Hg19::chr11:92922903..92922918,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep@chr11:92922903..92922918, +
8.91e-111FFCP PHASE1:Hg19::chr7:25702669..25702678,-#_4f1f011fe3b99afe8bf9ab96b4b4d9cep4@ENST00000446840, p4@uc003sxp.1
8.91e-111FFCP PHASE2:Hg19::chr10:114094924..114094935,-#_4f1f011fe3b99afe8bf9ab96b4b4d9cep@chr10:114094924..114094935, -
8.91e-111FFCP PHASE1:Hg19::chr10:114094924..114094935,-#_4f1f011fe3b99afe8bf9ab96b4b4d9cep@chr10:114094924..114094935, -
8.91e-111FFCP PHASE1:Hg19::chr11:69951071..69951079,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep@chr11:69951071..69951079, +
8.91e-111FFCP PHASE2:Hg19::chr11:92922903..92922918,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep@chr11:92922903..92922918, +
8.91e-111FFCP PHASE2:Hg19::chr16:2126158..2126172,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep9@TSC2
8.91e-111FFCP PHASE2:Hg19::chr10:119307515..119307518,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep23@EMX2
8.91e-111FFCP PHASE1:Hg19::chr10:119307515..119307518,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep23@EMX2
8.91e-111FFCP PHASE2:Hg19::chr11:69951071..69951079,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep@chr11:69951071..69951079, +
8.91e-111FFCP PHASE1:Hg19::chr16:2126158..2126172,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep9@TSC2
8.91e-111FFCP PHASE2:Hg19::chr14:21214039..21214057,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep1@EDDM3A
8.91e-111FFCP PHASE1:Hg19::chr14:21214039..21214057,+#_4f1f011fe3b99afe8bf9ab96b4b4d9cep1@EDDM3A
8.91e-111FFCP PHASE2:Hg19::chr7:25702669..25702678,-#_4f1f011fe3b99afe8bf9ab96b4b4d9cep4@ENST00000446840, p4@uc003sxp.1
1.3e-110FFCP PHASE1:Hg19::chr17:59475447..59475455,+#_45362432bd4712d7e8a1ae1ee2b95bafp@chr17:59475447..59475455, +
1.3e-110FFCP PHASE2:Hg19::chr11:69950033..69950046,+#_45362432bd4712d7e8a1ae1ee2b95bafp11@ANO1
1.3e-110FFCP PHASE1:Hg19::chr11:125706033..125706038,+#_45362432bd4712d7e8a1ae1ee2b95bafp@chr11:125706033..125706038, +
1.3e-110FFCP PHASE2:Hg19::chr15:64423864..64423884,+#_45362432bd4712d7e8a1ae1ee2b95bafp8@SNX1
1.3e-110FFCP PHASE2:Hg19::chr11:125706033..125706038,+#_45362432bd4712d7e8a1ae1ee2b95bafp@chr11:125706033..125706038, +
1.3e-110FFCP PHASE1:Hg19::chr15:64423864..64423884,+#_45362432bd4712d7e8a1ae1ee2b95bafp8@SNX1
1.3e-110FFCP PHASE2:Hg19::chr17:59475447..59475455,+#_45362432bd4712d7e8a1ae1ee2b95bafp@chr17:59475447..59475455, +
1.3e-110FFCP PHASE1:Hg19::chr11:69950033..69950046,+#_45362432bd4712d7e8a1ae1ee2b95bafp11@ANO1
1.89e-110FFCP PHASE1:Hg19::chr2:87985242..87985251,-#_611d11659285a3602a9e16d44c3ce609p@chr2:87985242..87985251, -
1.89e-110FFCP PHASE2:Hg19::chr2:87985242..87985251,-#_611d11659285a3602a9e16d44c3ce609p@chr2:87985242..87985251, -
1.89e-110FFCP PHASE2:Hg19::chr10:102505147..102505162,+#_611d11659285a3602a9e16d44c3ce609p9@PAX2
1.89e-110FFCP PHASE1:Hg19::chr10:102505147..102505162,+#_611d11659285a3602a9e16d44c3ce609p9@PAX2
2.76e-110FFCP PHASE1:Hg19::chr3:107201385..107201388,-#_b59dbfeffe1b92310abf11f9374ef872p@chr3:107201385..107201388, -
2.76e-110FFCP PHASE2:Hg19::chr3:107201385..107201388,-#_b59dbfeffe1b92310abf11f9374ef872p@chr3:107201385..107201388, -
1.55e-98FFCP PHASE2:Hg19::chr20:43851142..43851164,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43851142..43851164, +
1.55e-98FFCP PHASE1:Hg19::chr20:43851737..43851742,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43851737..43851742, +
1.55e-98FFCP PHASE2:Hg19::chr20:43836329..43836334,-#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43836329..43836334, -
1.55e-98FFCP PHASE1:Hg19::chr11:1025034..1025037,-#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr11:1025034..1025037, -
1.55e-98FFCP PHASE1:Hg19::chr20:43836736..43836753,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43836736..43836753, +
1.55e-98FFCP PHASE1:Hg19::chr19:15706318..15706336,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr19:15706318..15706336, +
1.55e-98FFCP PHASE1:Hg19::chr19:15731989..15732000,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr19:15731989..15732000, +
1.55e-98FFCP PHASE2:Hg19::chr17:59239193..59239223,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr17:59239193..59239223, +
1.55e-98FFCP PHASE1:Hg19::chr5:175288705..175288713,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p28@CPLX2
1.55e-98FFCP PHASE1:Hg19::chr20:43850565..43850590,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43850565..43850590, +
1.55e-98FFCP PHASE2:Hg19::chr1:182369766..182369777,-#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p1@TEDDM1
1.55e-98FFCP PHASE1:Hg19::chr10:98351232..98351244,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr10:98351232..98351244, +
1.55e-98FFCP PHASE1:Hg19::chr20:43851377..43851400,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43851377..43851400, +
1.55e-98FFCP PHASE2:Hg19::chr20:43836162..43836169,-#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43836162..43836169, -
1.55e-98FFCP PHASE2:Hg19::chr20:123140..123152,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p3@DEFB126
1.55e-98FFCP PHASE2:Hg19::chr2:18887940..18887947,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr2:18887940..18887947, +
1.55e-98FFCP PHASE2:Hg19::chr20:43851994..43852003,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43851994..43852003, +
1.55e-98FFCP PHASE2:Hg19::chr20:43837102..43837114,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43837102..43837114, +
1.55e-98FFCP PHASE2:Hg19::chr19:15739153..15739175,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr19:15739153..15739175, +
1.55e-98FFCP PHASE2:Hg19::chr8:24298569..24298574,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p6@ADAM7
1.55e-98FFCP PHASE2:Hg19::chr20:43850822..43850832,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43850822..43850832, +
1.55e-98FFCP PHASE1:Hg19::chr20:43851080..43851084,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43851080..43851084, +
1.55e-98FFCP PHASE1:Hg19::chr20:43836066..43836075,-#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43836066..43836075, -
1.55e-98FFCP PHASE2:Hg19::chr15:91849948..91849962,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr15:91849948..91849962, +
1.55e-98FFCP PHASE1:Hg19::chr4:56138971..56138991,-#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr4:56138971..56138991, -
1.55e-98FFCP PHASE1:Hg19::chr20:138128..138140,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p2@DEFB127
1.55e-98FFCP PHASE2:Hg19::chr20:43851712..43851727,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43851712..43851727, +
1.55e-98FFCP PHASE1:Hg19::chr10:8083905..8083915,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr10:8083905..8083915, +
1.55e-98FFCP PHASE1:Hg19::chr20:43853036..43853043,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43853036..43853043, +
1.55e-98FFCP PHASE2:Hg19::chr2:80773061..80773072,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr2:80773061..80773072, +
1.55e-98FFCP PHASE2:Hg19::chr20:43836696..43836705,-#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43836696..43836705, -
1.55e-98FFCP PHASE1:Hg19::chr20:43837295..43837300,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43837295..43837300, +
1.55e-98FFCP PHASE2:Hg19::chr19:15731181..15731184,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr19:15731181..15731184, +
1.55e-98FFCP PHASE2:Hg19::chr2:219942197..219942226,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr2:219942197..219942226, +
1.55e-98FFCP PHASE2:Hg19::chr20:43850545..43850564,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43850545..43850564, +
1.55e-98FFCP PHASE1:Hg19::chr1:24982271..24982281,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr1:24982271..24982281, +
1.55e-98FFCP PHASE2:Hg19::chr20:43851353..43851363,+#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr20:43851353..43851363, +
1.55e-98FFCP PHASE2:Hg19::chr11:34816713..34816719,-#_5d9c3e0d0dc6b5d8c4967ccfb3feb1a7p@chr11:34816713..34816719, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005904&oldid=3277816"