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{{UBERON
 
{{UBERON
|id=UBERON:0006215
+
|alt_id=
|name=rhombic lip
 
|namespace=
 
|def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
 
|xref=EHDAA2:0000229;;EMAPA:17074;;TAO:0001440;;XAO:0004135;;ZFA:0001440
 
|is_a=UBERON:0001048
 
|synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
|subset=vertebrate_core
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0006215
 +
|is_a=UBERON:0001048
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=UBERON:0002028
+
|name=rhombic lip
 +
|namespace=
 +
|obo_creation_date=
 +
|part_of=UBERON:0002028;;UBERON:0010092
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string
|is_obsolete=
+
|subset=vertebrate_core
|preceded_by=
+
|synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
 +
|union_of=
 +
|xref=EHDAA2:0000229;;EMAPA:17074;;TAO:0001440;;XAO:0004135;;ZFA:0001440
 
}}
 
}}

Revision as of 02:38, 12 September 2014

Name:rhombic lip
Definition:"The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0000229
EMAPA:17074
TAO:0001440
XAO:0004135

ZFA:0001440
Synonyms: "cerebellum primordium" RELATED [EMAPA:17074]
"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001048(primordium)
part_of:UBERON:0002028(hindbrain),UBERON:0010092(future metencephalon)



Children

develops from:UBERON:0002037 (cerebellum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006215 (rhombic lip), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.83e-98FFCP PHASE2:Hg19::chr14:52171354..52171361,+#_313c5c6a1300570bfbc9c72afbf5a297p43@FRMD6
1.83e-98FFCP PHASE1:Hg19::chr22:17891551..17891560,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr22:17891551..17891560, +
1.83e-98FFCP PHASE2:Hg19::chr16:609808..609817,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:609808..609817, +
1.83e-98FFCP PHASE2:Hg19::chr6:146350267..146350276,+#_313c5c6a1300570bfbc9c72afbf5a297p10@GRM1
1.83e-98FFCP PHASE2:Hg19::chr1:1953233..1953242,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:1953233..1953242, -
1.83e-98FFCP PHASE2:Hg19::chr11:64120370..64120371,+#_313c5c6a1300570bfbc9c72afbf5a297p16@CCDC88B
1.83e-98FFCP PHASE1:Hg19::chr18:5197269..5197276,-#_313c5c6a1300570bfbc9c72afbf5a297p7@C18orf42
1.83e-98FFCP PHASE1:Hg19::chr5:161112907..161112928,+#_313c5c6a1300570bfbc9c72afbf5a297p8@GABRA6
1.83e-98FFCP PHASE1:Hg19::chr8:17579288..17579296,-#_313c5c6a1300570bfbc9c72afbf5a297p69@MTUS1
1.83e-98FFCP PHASE2:Hg19::chr14:77582934..77582947,+#_313c5c6a1300570bfbc9c72afbf5a297p9@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr3:147139238..147139247,+#_313c5c6a1300570bfbc9c72afbf5a297p26@ZIC1
1.83e-98FFCP PHASE2:Hg19::chr5:161113284..161113295,+#_313c5c6a1300570bfbc9c72afbf5a297p7@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr7:119913819..119913824,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:119913819..119913824, -
1.83e-98FFCP PHASE1:Hg19::chr16:87377029..87377039,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:87377029..87377039, -
1.83e-98FFCP PHASE1:Hg19::chr3:22108417..22108426,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:22108417..22108426, -
1.83e-98FFCP PHASE2:Hg19::chr6:34004237..34004248,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:34004237..34004248, -
1.83e-98FFCP PHASE2:Hg19::chr7:128518888..128518897,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:128518888..128518897, -
1.83e-98FFCP PHASE1:Hg19::chr12:72667119..72667130,+#_313c5c6a1300570bfbc9c72afbf5a297p16@TRHDE
1.83e-98FFCP PHASE1:Hg19::chr1:59775752..59775763,+#_313c5c6a1300570bfbc9c72afbf5a297p19@FGGY
1.83e-98FFCP PHASE1:Hg19::chr17:72667619..72667628,+#_313c5c6a1300570bfbc9c72afbf5a297p9@RAB37
1.83e-98FFCP PHASE2:Hg19::chr14:24898471..24898476,-#_313c5c6a1300570bfbc9c72afbf5a297p13@CBLN3
1.83e-98FFCP PHASE2:Hg19::chr17:72673744..72673754,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:72673744..72673754, -
1.83e-98FFCP PHASE2:Hg19::chr5:161112675..161112678,+#_313c5c6a1300570bfbc9c72afbf5a297p10@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr18:8783620..8783627,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:8783620..8783627, +
1.83e-98FFCP PHASE2:Hg19::chr10:71562284..71562291,+#_313c5c6a1300570bfbc9c72afbf5a297p14@COL13A1
1.83e-98FFCP PHASE1:Hg19::chr3:147141170..147141181,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:147141170..147141181, -
1.83e-98FFCP PHASE1:Hg19::chr14:77582822..77582838,+#_313c5c6a1300570bfbc9c72afbf5a297p6@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr17:588406..588409,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:588406..588409, -
1.83e-98FFCP PHASE2:Hg19::chr19:6501203..6501206,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr19:6501203..6501206, -
1.83e-98FFCP PHASE1:Hg19::chr2:202634440..202634472,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr2:202634440..202634472, -
1.83e-98FFCP PHASE1:Hg19::chrX:71131124..71131135,+#_313c5c6a1300570bfbc9c72afbf5a297p@chrX:71131124..71131135, +
1.83e-98FFCP PHASE1:Hg19::chr1:244355163..244355179,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:244355163..244355179, +
1.83e-98FFCP PHASE2:Hg19::chr12:72667119..72667130,+#_313c5c6a1300570bfbc9c72afbf5a297p16@TRHDE
1.83e-98FFCP PHASE1:Hg19::chr18:8783620..8783627,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:8783620..8783627, +
1.83e-98FFCP PHASE1:Hg19::chr11:65999312..65999320,+#_313c5c6a1300570bfbc9c72afbf5a297p30@PACS1
1.83e-98FFCP PHASE1:Hg19::chr6:72922559..72922568,+#_313c5c6a1300570bfbc9c72afbf5a297p28@RIMS1
1.83e-98FFCP PHASE2:Hg19::chr20:45062007..45062020,+#_313c5c6a1300570bfbc9c72afbf5a297p7@AK054905
1.83e-98FFCP PHASE1:Hg19::chr14:24898354..24898366,-#_313c5c6a1300570bfbc9c72afbf5a297p8@CBLN3
1.83e-98FFCP PHASE1:Hg19::chr1:46639505..46639517,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:46639505..46639517, +
1.83e-98FFCP PHASE2:Hg19::chr18:39687774..39687782,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:39687774..39687782, +
1.83e-98FFCP PHASE1:Hg19::chr7:1277107..1277145,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:1277107..1277145, -
1.83e-98FFCP PHASE1:Hg19::chr22:51137783..51137794,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr22:51137783..51137794, +
1.83e-98FFCP PHASE1:Hg19::chr3:147114396..147114403,-#_313c5c6a1300570bfbc9c72afbf5a297p23@ZIC4
1.83e-98FFCP PHASE1:Hg19::chr11:122733093..122733100,+#_313c5c6a1300570bfbc9c72afbf5a297p8@CRTAM
1.83e-98FFCP PHASE1:Hg19::chr11:108438755..108438763,-#_313c5c6a1300570bfbc9c72afbf5a297p20@EXPH5
1.83e-98FFCP PHASE2:Hg19::chr2:155565839..155565848,+#_313c5c6a1300570bfbc9c72afbf5a297p12@KCNJ3
1.83e-98FFCP PHASE1:Hg19::chr21:47268058..47268079,+#_313c5c6a1300570bfbc9c72afbf5a297p5@PCBP3
1.83e-98FFCP PHASE1:Hg19::chr4:71928391..71928403,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:71928391..71928403, +
1.83e-98FFCP PHASE1:Hg19::chr16:49313357..49313362,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:49313357..49313362, -
1.83e-98FFCP PHASE1:Hg19::chr21:32624498..32624505,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:32624498..32624505, -
1.83e-98FFCP PHASE2:Hg19::chr14:77582822..77582838,+#_313c5c6a1300570bfbc9c72afbf5a297p6@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr17:48545700..48545707,+#_313c5c6a1300570bfbc9c72afbf5a297p5@ACSF2
1.83e-98FFCP PHASE1:Hg19::chr4:93224771..93224774,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:93224771..93224774, +
1.83e-98FFCP PHASE1:Hg19::chr20:45062215..45062225,+#_313c5c6a1300570bfbc9c72afbf5a297p4@AK054905
1.83e-98FFCP PHASE1:Hg19::chr11:64146203..64146207,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:64146203..64146207, +
1.83e-98FFCP PHASE2:Hg19::chr5:161112862..161112869,+#_313c5c6a1300570bfbc9c72afbf5a297p11@GABRA6
1.83e-98FFCP PHASE1:Hg19::chr2:149835072..149835078,+#_313c5c6a1300570bfbc9c72afbf5a297p39@KIF5C
1.83e-98FFCP PHASE2:Hg19::chr22:31968960..31968972,+#_313c5c6a1300570bfbc9c72afbf5a297p13@SFI1
1.83e-98FFCP PHASE1:Hg19::chr2:39892073..39892078,+#_313c5c6a1300570bfbc9c72afbf5a297p25@TMEM178
1.83e-98FFCP PHASE2:Hg19::chr4:93225050..93225057,+#_313c5c6a1300570bfbc9c72afbf5a297p11@GRID2
1.83e-98FFCP PHASE1:Hg19::chr4:114254131..114254143,+#_313c5c6a1300570bfbc9c72afbf5a297p35@ANK2
1.83e-98FFCP PHASE2:Hg19::chr4:166678786..166678822,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:166678786..166678822, -
1.83e-98FFCP PHASE1:Hg19::chr1:106499338..106499354,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:106499338..106499354, +
1.83e-98FFCP PHASE2:Hg19::chr14:24898354..24898366,-#_313c5c6a1300570bfbc9c72afbf5a297p8@CBLN3
1.83e-98FFCP PHASE2:Hg19::chr7:99995188..99995194,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:99995188..99995194, +
1.83e-98FFCP PHASE2:Hg19::chr4:89680444..89680453,-#_313c5c6a1300570bfbc9c72afbf5a297p31@FAM13A
1.83e-98FFCP PHASE1:Hg19::chr1:2241890..2241895,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:2241890..2241895, -
1.83e-98FFCP PHASE2:Hg19::chr20:45062290..45062300,+#_313c5c6a1300570bfbc9c72afbf5a297p3@AK054905
1.83e-98FFCP PHASE2:Hg19::chr5:87777127..87777141,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr5:87777127..87777141, +
1.83e-98FFCP PHASE1:Hg19::chr22:32022290..32022297,-#_313c5c6a1300570bfbc9c72afbf5a297p30@PISD
1.83e-98FFCP PHASE2:Hg19::chr3:22108366..22108373,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:22108366..22108373, -
1.83e-98FFCP PHASE2:Hg19::chr16:49313357..49313362,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:49313357..49313362, -
1.83e-98FFCP PHASE2:Hg19::chr1:59775744..59775751,+#_313c5c6a1300570bfbc9c72afbf5a297p24@FGGY
1.83e-98FFCP PHASE2:Hg19::chr4:2257102..2257110,-#_313c5c6a1300570bfbc9c72afbf5a297p6@MXD4
1.83e-98FFCP PHASE1:Hg19::chr7:155302128..155302137,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:155302128..155302137, -
1.83e-98FFCP PHASE1:Hg19::chr11:133821982..133821993,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:133821982..133821993, -
1.83e-98FFCP PHASE1:Hg19::chr8:17579304..17579321,-#_313c5c6a1300570bfbc9c72afbf5a297p40@MTUS1
1.83e-98FFCP PHASE2:Hg19::chr2:39116996..39117003,+#_313c5c6a1300570bfbc9c72afbf5a297p7@ARHGEF33
1.83e-98FFCP PHASE1:Hg19::chr1:206611115..206611119,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:206611115..206611119, +
1.83e-98FFCP PHASE2:Hg19::chr20:44935658..44935665,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr20:44935658..44935665, -
1.83e-98FFCP PHASE1:Hg19::chr15:81489302..81489313,+#_313c5c6a1300570bfbc9c72afbf5a297p20@IL16
1.83e-98FFCP PHASE1:Hg19::chr4:718943..718952,+#_313c5c6a1300570bfbc9c72afbf5a297p10@PCGF3
1.83e-98FFCP PHASE1:Hg19::chr16:4731350..4731363,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:4731350..4731363, +
1.83e-98FFCP PHASE1:Hg19::chr12:113682304..113682315,+#_313c5c6a1300570bfbc9c72afbf5a297p17@TPCN1
1.83e-98FFCP PHASE1:Hg19::chr7:29162047..29162055,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:29162047..29162055, +
1.83e-98FFCP PHASE1:Hg19::chr17:72673744..72673754,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:72673744..72673754, -
1.83e-98FFCP PHASE2:Hg19::chr4:71928371..71928382,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:71928371..71928382, +
1.83e-98FFCP PHASE1:Hg19::chr16:23419354..23419361,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:23419354..23419361, +
1.83e-98FFCP PHASE2:Hg19::chr17:72673771..72673779,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:72673771..72673779, -
1.83e-98FFCP PHASE1:Hg19::chr11:123396575..123396583,+#_313c5c6a1300570bfbc9c72afbf5a297p9@GRAMD1B
1.83e-98FFCP PHASE2:Hg19::chr5:161112693..161112696,+#_313c5c6a1300570bfbc9c72afbf5a297p12@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr18:66918040..66918047,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:66918040..66918047, -
1.83e-98FFCP PHASE1:Hg19::chr17:588406..588409,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:588406..588409, -
1.83e-98FFCP PHASE1:Hg19::chr13:100633194..100633202,+#_313c5c6a1300570bfbc9c72afbf5a297p6@AK298232
1.83e-98FFCP PHASE2:Hg19::chr1:242613002..242613023,-#_313c5c6a1300570bfbc9c72afbf5a297p11@PLD5
1.83e-98FFCP PHASE1:Hg19::chr14:77582845..77582854,+#_313c5c6a1300570bfbc9c72afbf5a297p10@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr19:6501233..6501243,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr19:6501233..6501243, -
1.83e-98FFCP PHASE2:Hg19::chr4:3287626..3287633,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:3287626..3287633, +
1.83e-98FFCP PHASE1:Hg19::chr6:34041419..34041429,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:34041419..34041429, -
1.83e-98FFCP PHASE1:Hg19::chrX:71131166..71131173,+#_313c5c6a1300570bfbc9c72afbf5a297p@chrX:71131166..71131173, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.