Personal tools

Difference between revisions of "UBERON:0006215"

From FANTOM5_SSTAR

Jump to: navigation, search
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{UBERON
 
{{UBERON
−
|id=UBERON:0006215
+
|alt_id=
−
|name=rhombic lip
 
−
|namespace=
 
−
|def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
 
−
|xref=EHDAA2:0000229;;EMAPA:17074;;TAO:0001440;;XAO:0004135;;ZFA:0001440
 
−
|is_a=UBERON:0001048
 
−
|synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
 
 
|comment=
 
|comment=
−
|alt_id=
 
−
|disjoint_from=
 
−
|union_of=
 
 
|created_by=
 
|created_by=
−
|obo_creation_date=
+
|def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
−
|subset=vertebrate_core
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0006215
 +
|is_a=UBERON:0001048
 +
|is_obsolete=
 
|located_in=
 
|located_in=
−
|part_of=
+
|name=rhombic lip
 +
|namespace=FANTOM
 +
|obo_creation_date=
 +
|part_of=UBERON:0002028;;UBERON:0010092
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string
−
|is_obsolete=
+
|subset=vertebrate_core
−
|preceded_by=
+
|synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
 +
|union_of=
 +
|xref=EHDAA2:0000229;;EMAPA:17074;;TAO:0001440;;XAO:0004135;;ZFA:0001440
 
}}
 
}}

Latest revision as of 08:56, 12 September 2014

Name:rhombic lip
Namespace:FANTOM
Definition:"The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0000229
EMAPA:17074
TAO:0001440
XAO:0004135

ZFA:0001440
Synonyms: "cerebellum primordium" RELATED [EMAPA:17074]
"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001048(primordium)
part_of:UBERON:0002028(hindbrain),UBERON:0010092(future metencephalon)



Children

develops from:UBERON:0002037 (cerebellum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006215 (rhombic lip), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.83e-98FFCP PHASE2:Hg19::chr11:133902562..133902580,+#_313c5c6a1300570bfbc9c72afbf5a297p1@ENST00000529070
1.83e-98FFCP PHASE1:Hg19::chr1:2241890..2241895,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:2241890..2241895, -
1.83e-98FFCP PHASE2:Hg19::chr8:140666585..140666599,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr8:140666585..140666599, -
1.83e-98FFCP PHASE2:Hg19::chr5:161113132..161113181,+#_313c5c6a1300570bfbc9c72afbf5a297p9@GABRA6
1.83e-98FFCP PHASE1:Hg19::chr22:32022290..32022297,-#_313c5c6a1300570bfbc9c72afbf5a297p30@PISD
1.83e-98FFCP PHASE2:Hg19::chr6:72922572..72922582,+#_313c5c6a1300570bfbc9c72afbf5a297p30@RIMS1
1.83e-98FFCP PHASE1:Hg19::chr7:1277107..1277145,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:1277107..1277145, -
1.83e-98FFCP PHASE2:Hg19::chrX:105192423..105192431,+#_313c5c6a1300570bfbc9c72afbf5a297p8@NRK
1.83e-98FFCP PHASE2:Hg19::chr3:9165885..9165918,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:9165885..9165918, +
1.83e-98FFCP PHASE1:Hg19::chr11:122733093..122733100,+#_313c5c6a1300570bfbc9c72afbf5a297p8@CRTAM
1.83e-98FFCP PHASE2:Hg19::chr16:612039..612048,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:612039..612048, -
1.83e-98FFCP PHASE1:Hg19::chrX:71131124..71131135,+#_313c5c6a1300570bfbc9c72afbf5a297p@chrX:71131124..71131135, +
1.83e-98FFCP PHASE2:Hg19::chr4:117873869..117873879,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:117873869..117873879, -
1.83e-98FFCP PHASE1:Hg19::chr6:72922559..72922568,+#_313c5c6a1300570bfbc9c72afbf5a297p28@RIMS1
1.83e-98FFCP PHASE2:Hg19::chr14:52171354..52171361,+#_313c5c6a1300570bfbc9c72afbf5a297p43@FRMD6
1.83e-98FFCP PHASE1:Hg19::chr15:81489302..81489313,+#_313c5c6a1300570bfbc9c72afbf5a297p20@IL16
1.83e-98FFCP PHASE2:Hg19::chr16:609808..609817,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:609808..609817, +
1.83e-98FFCP PHASE2:Hg19::chr1:228602576..228602587,-#_313c5c6a1300570bfbc9c72afbf5a297p1@CU689740
1.83e-98FFCP PHASE1:Hg19::chr4:718943..718952,+#_313c5c6a1300570bfbc9c72afbf5a297p10@PCGF3
1.83e-98FFCP PHASE2:Hg19::chr1:1953233..1953242,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:1953233..1953242, -
1.83e-98FFCP PHASE2:Hg19::chr7:49815147..49815153,+#_313c5c6a1300570bfbc9c72afbf5a297p5@VWC2
1.83e-98FFCP PHASE1:Hg19::chr16:4731350..4731363,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:4731350..4731363, +
1.83e-98FFCP PHASE2:Hg19::chr11:64120370..64120371,+#_313c5c6a1300570bfbc9c72afbf5a297p16@CCDC88B
1.83e-98FFCP PHASE1:Hg19::chr12:113682304..113682315,+#_313c5c6a1300570bfbc9c72afbf5a297p17@TPCN1
1.83e-98FFCP PHASE1:Hg19::chr17:72673744..72673754,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:72673744..72673754, -
1.83e-98FFCP PHASE2:Hg19::chr20:45061929..45061936,+#_313c5c6a1300570bfbc9c72afbf5a297p8@AK054905
1.83e-98FFCP PHASE2:Hg19::chr14:77582934..77582947,+#_313c5c6a1300570bfbc9c72afbf5a297p9@TMEM63C
1.83e-98FFCP PHASE1:Hg19::chr1:206611115..206611119,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:206611115..206611119, +
1.83e-98FFCP PHASE2:Hg19::chr1:24526024..24526028,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:24526024..24526028, +
1.83e-98FFCP PHASE1:Hg19::chr17:588406..588409,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:588406..588409, -
1.83e-98FFCP PHASE1:Hg19::chr13:100633194..100633202,+#_313c5c6a1300570bfbc9c72afbf5a297p6@AK298232
1.83e-98FFCP PHASE1:Hg19::chr14:77582845..77582854,+#_313c5c6a1300570bfbc9c72afbf5a297p10@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr16:58496260..58496271,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:58496260..58496271, +
1.83e-98FFCP PHASE2:Hg19::chr14:24898471..24898476,-#_313c5c6a1300570bfbc9c72afbf5a297p13@CBLN3
1.83e-98FFCP PHASE1:Hg19::chr16:23419354..23419361,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:23419354..23419361, +
1.83e-98FFCP PHASE2:Hg19::chr6:34046479..34046486,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:34046479..34046486, -
1.83e-98FFCP PHASE1:Hg19::chr1:244355180..244355201,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:244355180..244355201, +
1.83e-98FFCP PHASE2:Hg19::chr6:152884494..152884503,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:152884494..152884503, -
1.83e-98FFCP PHASE1:Hg19::chr13:100623731..100623747,-#_313c5c6a1300570bfbc9c72afbf5a297p8@ZIC5
1.83e-98FFCP PHASE1:Hg19::chr18:39687774..39687782,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:39687774..39687782, +
1.83e-98FFCP PHASE2:Hg19::chr10:71562284..71562291,+#_313c5c6a1300570bfbc9c72afbf5a297p14@COL13A1
1.83e-98FFCP PHASE1:Hg19::chr11:65999337..65999347,+#_313c5c6a1300570bfbc9c72afbf5a297p26@PACS1
1.83e-98FFCP PHASE2:Hg19::chr17:588406..588409,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:588406..588409, -
1.83e-98FFCP PHASE2:Hg19::chr19:6501203..6501206,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr19:6501203..6501206, -
1.83e-98FFCP PHASE1:Hg19::chr2:39894333..39894353,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr2:39894333..39894353, -
1.83e-98FFCP PHASE2:Hg19::chr5:161112767..161112774,+#_313c5c6a1300570bfbc9c72afbf5a297p5@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr4:93225020..93225031,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:93225020..93225031, +
1.83e-98FFCP PHASE1:Hg19::chr6:34041419..34041429,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:34041419..34041429, -
1.83e-98FFCP PHASE2:Hg19::chr17:72673744..72673754,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:72673744..72673754, -
1.83e-98FFCP PHASE2:Hg19::chr12:72667119..72667130,+#_313c5c6a1300570bfbc9c72afbf5a297p16@TRHDE
1.83e-98FFCP PHASE1:Hg19::chr11:133821982..133821993,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:133821982..133821993, -
1.83e-98FFCP PHASE1:Hg19::chr21:47314143..47314154,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:47314143..47314154, -
1.83e-98FFCP PHASE2:Hg19::chr3:22108225..22108233,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:22108225..22108233, -
1.83e-98FFCP PHASE1:Hg19::chr8:17579304..17579321,-#_313c5c6a1300570bfbc9c72afbf5a297p40@MTUS1
1.83e-98FFCP PHASE1:Hg19::chr13:42792979..42793012,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr13:42792979..42793012, +
1.83e-98FFCP PHASE2:Hg19::chr18:39687774..39687782,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:39687774..39687782, +
1.83e-98FFCP PHASE1:Hg19::chr17:48545700..48545707,+#_313c5c6a1300570bfbc9c72afbf5a297p5@ACSF2
1.83e-98FFCP PHASE1:Hg19::chr21:32624517..32624531,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:32624517..32624531, -
1.83e-98FFCP PHASE1:Hg19::chr7:155302128..155302137,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:155302128..155302137, -
1.83e-98FFCP PHASE1:Hg19::chr11:64146900..64146905,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:64146900..64146905, +
1.83e-98FFCP PHASE1:Hg19::chr7:29162047..29162055,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:29162047..29162055, +
1.83e-98FFCP PHASE2:Hg19::chr3:147139238..147139247,+#_313c5c6a1300570bfbc9c72afbf5a297p26@ZIC1
1.83e-98FFCP PHASE1:Hg19::chr16:3656599..3656608,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:3656599..3656608, -
1.83e-98FFCP PHASE1:Hg19::chr11:104480062..104480069,-#_313c5c6a1300570bfbc9c72afbf5a297p3@ENST00000538641
1.83e-98FFCP PHASE2:Hg19::chr14:77582822..77582838,+#_313c5c6a1300570bfbc9c72afbf5a297p6@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr17:48545700..48545707,+#_313c5c6a1300570bfbc9c72afbf5a297p5@ACSF2
1.83e-98FFCP PHASE2:Hg19::chr6:146350267..146350276,+#_313c5c6a1300570bfbc9c72afbf5a297p10@GRM1
1.83e-98FFCP PHASE2:Hg19::chr7:128518888..128518897,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:128518888..128518897, -
1.83e-98FFCP PHASE1:Hg19::chr11:123396575..123396583,+#_313c5c6a1300570bfbc9c72afbf5a297p9@GRAMD1B
1.83e-98FFCP PHASE2:Hg19::chr5:161113284..161113295,+#_313c5c6a1300570bfbc9c72afbf5a297p7@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr7:119913819..119913824,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:119913819..119913824, -
1.83e-98FFCP PHASE2:Hg19::chr14:24898354..24898366,-#_313c5c6a1300570bfbc9c72afbf5a297p8@CBLN3
1.83e-98FFCP PHASE2:Hg19::chr6:34004237..34004248,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:34004237..34004248, -
1.83e-98FFCP PHASE1:Hg19::chr7:29237354..29237369,+#_313c5c6a1300570bfbc9c72afbf5a297p32@CHN2
1.83e-98FFCP PHASE1:Hg19::chrX:71131166..71131173,+#_313c5c6a1300570bfbc9c72afbf5a297p@chrX:71131166..71131173, +
1.83e-98FFCP PHASE2:Hg19::chr5:161112675..161112678,+#_313c5c6a1300570bfbc9c72afbf5a297p10@GABRA6
1.83e-98FFCP PHASE1:Hg19::chr5:161113132..161113181,+#_313c5c6a1300570bfbc9c72afbf5a297p9@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr18:8783620..8783627,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:8783620..8783627, +
1.83e-98FFCP PHASE1:Hg19::chr12:78430875..78430887,+#_313c5c6a1300570bfbc9c72afbf5a297p1@AB384547
1.83e-98FFCP PHASE1:Hg19::chr6:72922572..72922582,+#_313c5c6a1300570bfbc9c72afbf5a297p30@RIMS1
1.83e-98FFCP PHASE1:Hg19::chr3:9165885..9165918,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:9165885..9165918, +
1.83e-98FFCP PHASE1:Hg19::chr15:81489344..81489353,+#_313c5c6a1300570bfbc9c72afbf5a297p31@IL16
1.83e-98FFCP PHASE1:Hg19::chr9:109460295..109460307,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr9:109460295..109460307, +
1.83e-98FFCP PHASE1:Hg19::chr4:117873869..117873879,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:117873869..117873879, -
1.83e-98FFCP PHASE1:Hg19::chr17:72673771..72673779,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:72673771..72673779, -
1.83e-98FFCP PHASE1:Hg19::chr20:45061929..45061936,+#_313c5c6a1300570bfbc9c72afbf5a297p8@AK054905
1.83e-98FFCP PHASE2:Hg19::chr20:45062007..45062020,+#_313c5c6a1300570bfbc9c72afbf5a297p7@AK054905
1.83e-98FFCP PHASE1:Hg19::chr18:66918040..66918047,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:66918040..66918047, -
1.83e-98FFCP PHASE2:Hg19::chr16:49313357..49313362,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:49313357..49313362, -
1.83e-98FFCP PHASE1:Hg19::chr1:228602576..228602587,-#_313c5c6a1300570bfbc9c72afbf5a297p1@CU689740
1.83e-98FFCP PHASE1:Hg19::chr1:1953233..1953242,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:1953233..1953242, -
1.83e-98FFCP PHASE1:Hg19::chr14:77582887..77582896,+#_313c5c6a1300570bfbc9c72afbf5a297p12@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr2:155565839..155565848,+#_313c5c6a1300570bfbc9c72afbf5a297p12@KCNJ3
1.83e-98FFCP PHASE1:Hg19::chr18:59415396..59415427,+#_313c5c6a1300570bfbc9c72afbf5a297p1@uc002lig.1
1.83e-98FFCP PHASE1:Hg19::chr1:24526024..24526028,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:24526024..24526028, +
1.83e-98FFCP PHASE2:Hg19::chr18:66918040..66918047,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:66918040..66918047, -
1.83e-98FFCP PHASE2:Hg19::chr4:166678786..166678822,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:166678786..166678822, -
1.83e-98FFCP PHASE2:Hg19::chr19:6501233..6501243,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr19:6501233..6501243, -
1.83e-98FFCP PHASE2:Hg19::chr5:161112862..161112869,+#_313c5c6a1300570bfbc9c72afbf5a297p11@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr22:31968960..31968972,+#_313c5c6a1300570bfbc9c72afbf5a297p13@SFI1










Property "Property value" (as page type) with input value "UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp3.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006215&oldid=3277830"