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{{UBERON
 
{{UBERON
|id=UBERON:0006215
+
|alt_id=
|name=rhombic lip
 
|namespace=
 
|def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
 
|xref=EHDAA2:0000229;;EMAPA:17074;;XAO:0004135;;ZFA:0001440
 
|is_a=UBERON:0001048
 
|synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
|subset=vertebrate_core
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0006215
 +
|is_a=UBERON:0001048
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=UBERON:0002028
+
|name=rhombic lip
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+
|namespace=FANTOM
|is_obsolete=
+
|obo_creation_date=
 +
|part_of=UBERON:0002028;;UBERON:0010092
 
|preceded_by=
 
|preceded_by=
 +
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string
 +
|subset=vertebrate_core
 +
|synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
 +
|union_of=
 +
|xref=EHDAA2:0000229;;EMAPA:17074;;TAO:0001440;;XAO:0004135;;ZFA:0001440
 
}}
 
}}

Latest revision as of 08:56, 12 September 2014

Name:rhombic lip
Namespace:FANTOM
Definition:"The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0000229
EMAPA:17074
TAO:0001440
XAO:0004135

ZFA:0001440
Synonyms: "cerebellum primordium" RELATED [EMAPA:17074]
"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001048(primordium)
part_of:UBERON:0002028(hindbrain),UBERON:0010092(future metencephalon)



Children

develops from:UBERON:0002037 (cerebellum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006215 (rhombic lip), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.83e-98FFCP PHASE1:Hg19::chr17:72667207..72667214,+#_313c5c6a1300570bfbc9c72afbf5a297p12@RAB37
1.83e-98FFCP PHASE1:Hg19::chr6:31334809..31334819,-#_313c5c6a1300570bfbc9c72afbf5a297p1@DHFRP2
1.83e-98FFCP PHASE1:Hg19::chr20:45061641..45061646,-#_313c5c6a1300570bfbc9c72afbf5a297p13@ELMO2
1.83e-98FFCP PHASE2:Hg19::chr1:106499338..106499354,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:106499338..106499354, +
1.83e-98FFCP PHASE1:Hg19::chr7:99995188..99995194,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:99995188..99995194, +
1.83e-98FFCP PHASE2:Hg19::chr11:133821982..133821993,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:133821982..133821993, -
1.83e-98FFCP PHASE1:Hg19::chr3:22062741..22062742,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:22062741..22062742, -
1.83e-98FFCP PHASE2:Hg19::chr7:29237354..29237369,+#_313c5c6a1300570bfbc9c72afbf5a297p32@CHN2
1.83e-98FFCP PHASE1:Hg19::chr14:77582934..77582947,+#_313c5c6a1300570bfbc9c72afbf5a297p9@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr6:34041419..34041429,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:34041419..34041429, -
1.83e-98FFCP PHASE2:Hg19::chrX:71131166..71131173,+#_313c5c6a1300570bfbc9c72afbf5a297p@chrX:71131166..71131173, +
1.83e-98FFCP PHASE2:Hg19::chr1:244355180..244355201,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:244355180..244355201, +
1.83e-98FFCP PHASE2:Hg19::chr21:47314143..47314154,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:47314143..47314154, -
1.83e-98FFCP PHASE1:Hg19::chr19:17992758..17992791,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr19:17992758..17992791, +
1.83e-98FFCP PHASE2:Hg19::chr2:39894333..39894353,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr2:39894333..39894353, -
1.83e-98FFCP PHASE1:Hg19::chr20:30616884..30616898,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr20:30616884..30616898, -
1.83e-98FFCP PHASE2:Hg19::chr14:60048980..60048989,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr14:60048980..60048989, -
1.83e-98FFCP PHASE2:Hg19::chr21:32624517..32624531,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:32624517..32624531, -
1.83e-98FFCP PHASE1:Hg19::chr5:159766567..159766580,-#_313c5c6a1300570bfbc9c72afbf5a297p8@CCNJL
1.83e-98FFCP PHASE1:Hg19::chr14:24898471..24898476,-#_313c5c6a1300570bfbc9c72afbf5a297p13@CBLN3
1.83e-98FFCP PHASE1:Hg19::chr19:3056479..3056494,-#_313c5c6a1300570bfbc9c72afbf5a297p27@AES
1.83e-98FFCP PHASE2:Hg19::chr9:109460295..109460307,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr9:109460295..109460307, +
1.83e-98FFCP PHASE1:Hg19::chr6:72922523..72922536,+#_313c5c6a1300570bfbc9c72afbf5a297p26@RIMS1
1.83e-98FFCP PHASE2:Hg19::chr17:72667207..72667214,+#_313c5c6a1300570bfbc9c72afbf5a297p12@RAB37
1.83e-98FFCP PHASE2:Hg19::chr16:49357829..49357832,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:49357829..49357832, +
1.83e-98FFCP PHASE1:Hg19::chr22:17891551..17891560,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr22:17891551..17891560, +
1.83e-98FFCP PHASE2:Hg19::chr11:123396575..123396583,+#_313c5c6a1300570bfbc9c72afbf5a297p9@GRAMD1B
1.83e-98FFCP PHASE1:Hg19::chr18:5197269..5197276,-#_313c5c6a1300570bfbc9c72afbf5a297p7@C18orf42
1.83e-98FFCP PHASE1:Hg19::chr5:161112907..161112928,+#_313c5c6a1300570bfbc9c72afbf5a297p8@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr11:104480062..104480069,-#_313c5c6a1300570bfbc9c72afbf5a297p3@ENST00000538641
1.83e-98FFCP PHASE1:Hg19::chr6:70647902..70647917,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:70647902..70647917, +
1.83e-98FFCP PHASE1:Hg19::chr17:72667619..72667628,+#_313c5c6a1300570bfbc9c72afbf5a297p9@RAB37
1.83e-98FFCP PHASE1:Hg19::chr16:87377029..87377039,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:87377029..87377039, -
1.83e-98FFCP PHASE1:Hg19::chr3:22108417..22108426,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:22108417..22108426, -
1.83e-98FFCP PHASE2:Hg19::chr16:608967..608994,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:608967..608994, +
1.83e-98FFCP PHASE1:Hg19::chr12:72667119..72667130,+#_313c5c6a1300570bfbc9c72afbf5a297p16@TRHDE
1.83e-98FFCP PHASE1:Hg19::chr1:59775752..59775763,+#_313c5c6a1300570bfbc9c72afbf5a297p19@FGGY
1.83e-98FFCP PHASE2:Hg19::chr18:5197269..5197276,-#_313c5c6a1300570bfbc9c72afbf5a297p7@C18orf42
1.83e-98FFCP PHASE2:Hg19::chr8:140666585..140666599,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr8:140666585..140666599, -
1.83e-98FFCP PHASE2:Hg19::chr5:161113132..161113181,+#_313c5c6a1300570bfbc9c72afbf5a297p9@GABRA6
1.83e-98FFCP PHASE1:Hg19::chr7:14025135..14025147,-#_313c5c6a1300570bfbc9c72afbf5a297p42@ETV1
1.83e-98FFCP PHASE2:Hg19::chr6:72922572..72922582,+#_313c5c6a1300570bfbc9c72afbf5a297p30@RIMS1
1.83e-98FFCP PHASE1:Hg19::chr3:147141170..147141181,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:147141170..147141181, -
1.83e-98FFCP PHASE2:Hg19::chr16:87377029..87377039,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:87377029..87377039, -
1.83e-98FFCP PHASE1:Hg19::chr14:77582822..77582838,+#_313c5c6a1300570bfbc9c72afbf5a297p6@TMEM63C
1.83e-98FFCP PHASE1:Hg19::chr2:202634440..202634472,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr2:202634440..202634472, -
1.83e-98FFCP PHASE2:Hg19::chr3:9165885..9165918,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:9165885..9165918, +
1.83e-98FFCP PHASE1:Hg19::chr7:44308399..44308433,-#_313c5c6a1300570bfbc9c72afbf5a297p17@CAMK2B
1.83e-98FFCP PHASE1:Hg19::chr3:147114396..147114403,-#_313c5c6a1300570bfbc9c72afbf5a297p23@ZIC4
1.83e-98FFCP PHASE1:Hg19::chr6:72922664..72922672,+#_313c5c6a1300570bfbc9c72afbf5a297p31@RIMS1
1.83e-98FFCP PHASE1:Hg19::chr11:108438755..108438763,-#_313c5c6a1300570bfbc9c72afbf5a297p20@EXPH5
1.83e-98FFCP PHASE2:Hg19::chr17:72667619..72667628,+#_313c5c6a1300570bfbc9c72afbf5a297p9@RAB37
1.83e-98FFCP PHASE1:Hg19::chr1:244355163..244355179,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:244355163..244355179, +
1.83e-98FFCP PHASE1:Hg19::chr18:8783620..8783627,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr18:8783620..8783627, +
1.83e-98FFCP PHASE1:Hg19::chr7:128520567..128520578,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:128520567..128520578, -
1.83e-98FFCP PHASE2:Hg19::chr4:117873869..117873879,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:117873869..117873879, -
1.83e-98FFCP PHASE1:Hg19::chr11:65999312..65999320,+#_313c5c6a1300570bfbc9c72afbf5a297p30@PACS1
1.83e-98FFCP PHASE1:Hg19::chr14:24898354..24898366,-#_313c5c6a1300570bfbc9c72afbf5a297p8@CBLN3
1.83e-98FFCP PHASE1:Hg19::chr1:46639505..46639517,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:46639505..46639517, +
1.83e-98FFCP PHASE2:Hg19::chrX:105192423..105192431,+#_313c5c6a1300570bfbc9c72afbf5a297p8@NRK
1.83e-98FFCP PHASE1:Hg19::chr22:51137783..51137794,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr22:51137783..51137794, +
1.83e-98FFCP PHASE1:Hg19::chr11:31822160..31822172,-#_313c5c6a1300570bfbc9c72afbf5a297p30@PAX6
1.83e-98FFCP PHASE1:Hg19::chr21:32624498..32624505,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:32624498..32624505, -
1.83e-98FFCP PHASE1:Hg19::chr4:93224771..93224774,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:93224771..93224774, +
1.83e-98FFCP PHASE1:Hg19::chr20:45062215..45062225,+#_313c5c6a1300570bfbc9c72afbf5a297p4@AK054905
1.83e-98FFCP PHASE2:Hg19::chr1:228602576..228602587,-#_313c5c6a1300570bfbc9c72afbf5a297p1@CU689740
1.83e-98FFCP PHASE2:Hg19::chr7:49815147..49815153,+#_313c5c6a1300570bfbc9c72afbf5a297p5@VWC2
1.83e-98FFCP PHASE1:Hg19::chr21:47268058..47268079,+#_313c5c6a1300570bfbc9c72afbf5a297p5@PCBP3
1.83e-98FFCP PHASE1:Hg19::chr8:17579288..17579296,-#_313c5c6a1300570bfbc9c72afbf5a297p69@MTUS1
1.83e-98FFCP PHASE2:Hg19::chr20:45061929..45061936,+#_313c5c6a1300570bfbc9c72afbf5a297p8@AK054905
1.83e-98FFCP PHASE2:Hg19::chr13:113624941..113624962,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr13:113624941..113624962, -
1.83e-98FFCP PHASE1:Hg19::chr4:71928391..71928403,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:71928391..71928403, +
1.83e-98FFCP PHASE1:Hg19::chr16:49313357..49313362,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:49313357..49313362, -
1.83e-98FFCP PHASE2:Hg19::chr13:100633107..100633110,+#_313c5c6a1300570bfbc9c72afbf5a297p7@AK298232
1.83e-98FFCP PHASE1:Hg19::chr1:106499338..106499354,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:106499338..106499354, +
1.83e-98FFCP PHASE2:Hg19::chr16:58496260..58496271,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:58496260..58496271, +
1.83e-98FFCP PHASE1:Hg19::chr11:64146203..64146207,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:64146203..64146207, +
1.83e-98FFCP PHASE1:Hg19::chr2:149835072..149835078,+#_313c5c6a1300570bfbc9c72afbf5a297p39@KIF5C
1.83e-98FFCP PHASE1:Hg19::chr2:39892073..39892078,+#_313c5c6a1300570bfbc9c72afbf5a297p25@TMEM178
1.83e-98FFCP PHASE2:Hg19::chr6:34046479..34046486,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:34046479..34046486, -
1.83e-98FFCP PHASE2:Hg19::chr1:24526024..24526028,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:24526024..24526028, +
1.83e-98FFCP PHASE1:Hg19::chr4:114254131..114254143,+#_313c5c6a1300570bfbc9c72afbf5a297p35@ANK2
1.83e-98FFCP PHASE1:Hg19::chr22:32022290..32022297,-#_313c5c6a1300570bfbc9c72afbf5a297p30@PISD
1.83e-98FFCP PHASE2:Hg19::chr5:161112767..161112774,+#_313c5c6a1300570bfbc9c72afbf5a297p5@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr11:133902562..133902580,+#_313c5c6a1300570bfbc9c72afbf5a297p1@ENST00000529070
1.83e-98FFCP PHASE1:Hg19::chr1:2241890..2241895,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:2241890..2241895, -
1.83e-98FFCP PHASE2:Hg19::chr4:93225020..93225031,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:93225020..93225031, +
1.83e-98FFCP PHASE2:Hg19::chr6:152884494..152884503,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:152884494..152884503, -
1.83e-98FFCP PHASE2:Hg19::chr3:22108225..22108233,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:22108225..22108233, -
1.83e-98FFCP PHASE1:Hg19::chr6:72922559..72922568,+#_313c5c6a1300570bfbc9c72afbf5a297p28@RIMS1
1.83e-98FFCP PHASE1:Hg19::chr7:1277107..1277145,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:1277107..1277145, -
1.83e-98FFCP PHASE1:Hg19::chr11:122733093..122733100,+#_313c5c6a1300570bfbc9c72afbf5a297p8@CRTAM
1.83e-98FFCP PHASE2:Hg19::chr16:612039..612048,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:612039..612048, -
1.83e-98FFCP PHASE1:Hg19::chrX:71131124..71131135,+#_313c5c6a1300570bfbc9c72afbf5a297p@chrX:71131124..71131135, +
1.83e-98FFCP PHASE1:Hg19::chr17:72673744..72673754,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr17:72673744..72673754, -
1.83e-98FFCP PHASE2:Hg19::chr14:77582934..77582947,+#_313c5c6a1300570bfbc9c72afbf5a297p9@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr3:147139238..147139247,+#_313c5c6a1300570bfbc9c72afbf5a297p26@ZIC1
1.83e-98FFCP PHASE1:Hg19::chr1:206611115..206611119,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:206611115..206611119, +
1.83e-98FFCP PHASE2:Hg19::chr14:52171354..52171361,+#_313c5c6a1300570bfbc9c72afbf5a297p43@FRMD6
1.83e-98FFCP PHASE1:Hg19::chr15:81489302..81489313,+#_313c5c6a1300570bfbc9c72afbf5a297p20@IL16










Property "Property value" (as page type) with input value "UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.