Personal tools

Difference between revisions of "UBERON:0006215"

From FANTOM5_SSTAR

Jump to: navigation, search
Line 4: Line 4:
 
|namespace=
 
|namespace=
 
|def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
 
|def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
|xref=EHDAA2:0000229;;EMAPA:17074;;XAO:0004135;;ZFA:0001440
+
|xref=EHDAA2:0000229;;EMAPA:17074;;TAO:0001440;;XAO:0004135;;ZFA:0001440
 
|is_a=UBERON:0001048
 
|is_a=UBERON:0001048
 
|synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
 
|synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
Line 14: Line 14:
 
|obo_creation_date=
 
|obo_creation_date=
 
|subset=vertebrate_core
 
|subset=vertebrate_core
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 
|has_quality=
 
|has_quality=
 
|located_in=
 
|located_in=
|part_of=UBERON:0002028
+
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string
 
|is_obsolete=
 
|is_obsolete=
 
|preceded_by=
 
|preceded_by=
 
}}
 
}}

Revision as of 08:07, 26 June 2012

Name:rhombic lip
Definition:"The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0000229
EMAPA:17074
TAO:0001440
XAO:0004135

ZFA:0001440
Synonyms: "cerebellum primordium" RELATED [EMAPA:17074]
"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001048(primordium)



Children

develops from:UBERON:0002037 (cerebellum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006215 (rhombic lip), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.83e-98FFCP PHASE2:Hg19::chr11:64146203..64146207,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:64146203..64146207, +
1.83e-98FFCP PHASE1:Hg19::chr5:161112675..161112678,+#_313c5c6a1300570bfbc9c72afbf5a297p10@GABRA6
1.83e-98FFCP PHASE1:Hg19::chr17:9862312..9862332,-#_313c5c6a1300570bfbc9c72afbf5a297p32@GAS7
1.83e-98FFCP PHASE2:Hg19::chr16:3656599..3656608,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:3656599..3656608, -
1.83e-98FFCP PHASE1:Hg19::chr20:45062007..45062020,+#_313c5c6a1300570bfbc9c72afbf5a297p7@AK054905
1.83e-98FFCP PHASE2:Hg19::chr3:147141170..147141181,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:147141170..147141181, -
1.83e-98FFCP PHASE2:Hg19::chr2:202634440..202634472,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr2:202634440..202634472, -
1.83e-98FFCP PHASE2:Hg19::chr1:59775752..59775763,+#_313c5c6a1300570bfbc9c72afbf5a297p19@FGGY
1.83e-98FFCP PHASE2:Hg19::chr3:147114396..147114403,-#_313c5c6a1300570bfbc9c72afbf5a297p23@ZIC4
1.83e-98FFCP PHASE2:Hg19::chr6:72922664..72922672,+#_313c5c6a1300570bfbc9c72afbf5a297p31@RIMS1
1.83e-98FFCP PHASE2:Hg19::chr19:3056479..3056494,-#_313c5c6a1300570bfbc9c72afbf5a297p27@AES
1.83e-98FFCP PHASE2:Hg19::chrX:71131124..71131135,+#_313c5c6a1300570bfbc9c72afbf5a297p@chrX:71131124..71131135, +
1.83e-98FFCP PHASE2:Hg19::chr1:244355163..244355179,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:244355163..244355179, +
1.83e-98FFCP PHASE2:Hg19::chr11:31822160..31822172,-#_313c5c6a1300570bfbc9c72afbf5a297p30@PAX6
1.83e-98FFCP PHASE2:Hg19::chr7:128520567..128520578,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:128520567..128520578, -
1.83e-98FFCP PHASE2:Hg19::chr11:108438755..108438763,-#_313c5c6a1300570bfbc9c72afbf5a297p20@EXPH5
1.83e-98FFCP PHASE2:Hg19::chr17:9862312..9862332,-#_313c5c6a1300570bfbc9c72afbf5a297p32@GAS7
1.83e-98FFCP PHASE2:Hg19::chr1:46639505..46639517,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:46639505..46639517, +
1.83e-98FFCP PHASE2:Hg19::chr19:17992758..17992791,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr19:17992758..17992791, +
1.83e-98FFCP PHASE1:Hg19::chr11:64120370..64120371,+#_313c5c6a1300570bfbc9c72afbf5a297p16@CCDC88B
1.83e-98FFCP PHASE2:Hg19::chr22:51137783..51137794,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr22:51137783..51137794, +
1.83e-98FFCP PHASE2:Hg19::chr21:32624498..32624505,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:32624498..32624505, -
1.83e-98FFCP PHASE2:Hg19::chr4:93224771..93224774,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:93224771..93224774, +
1.83e-98FFCP PHASE1:Hg19::chr2:155565839..155565848,+#_313c5c6a1300570bfbc9c72afbf5a297p12@KCNJ3
1.83e-98FFCP PHASE2:Hg19::chr21:47268058..47268079,+#_313c5c6a1300570bfbc9c72afbf5a297p5@PCBP3
1.83e-98FFCP PHASE1:Hg19::chr22:31968960..31968972,+#_313c5c6a1300570bfbc9c72afbf5a297p13@SFI1
1.83e-98FFCP PHASE2:Hg19::chr4:71928391..71928403,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:71928391..71928403, +
1.83e-98FFCP PHASE2:Hg19::chr12:78430875..78430887,+#_313c5c6a1300570bfbc9c72afbf5a297p1@AB384547
1.83e-98FFCP PHASE2:Hg19::chr20:45062215..45062225,+#_313c5c6a1300570bfbc9c72afbf5a297p4@AK054905
1.83e-98FFCP PHASE1:Hg19::chr19:6501233..6501243,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr19:6501233..6501243, -
1.83e-98FFCP PHASE1:Hg19::chr5:161112862..161112869,+#_313c5c6a1300570bfbc9c72afbf5a297p11@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr15:81489344..81489353,+#_313c5c6a1300570bfbc9c72afbf5a297p31@IL16
1.83e-98FFCP PHASE2:Hg19::chr2:149835072..149835078,+#_313c5c6a1300570bfbc9c72afbf5a297p39@KIF5C
1.83e-98FFCP PHASE1:Hg19::chr4:93225050..93225057,+#_313c5c6a1300570bfbc9c72afbf5a297p11@GRID2
1.83e-98FFCP PHASE2:Hg19::chr2:39892073..39892078,+#_313c5c6a1300570bfbc9c72afbf5a297p25@TMEM178
1.83e-98FFCP PHASE1:Hg19::chr20:45062290..45062300,+#_313c5c6a1300570bfbc9c72afbf5a297p3@AK054905
1.83e-98FFCP PHASE2:Hg19::chr12:113682304..113682315,+#_313c5c6a1300570bfbc9c72afbf5a297p17@TPCN1
1.83e-98FFCP PHASE1:Hg19::chr13:113624941..113624962,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr13:113624941..113624962, -
1.83e-98FFCP PHASE2:Hg19::chr4:114254131..114254143,+#_313c5c6a1300570bfbc9c72afbf5a297p35@ANK2
1.83e-98FFCP PHASE1:Hg19::chr17:39553443..39553452,-#_313c5c6a1300570bfbc9c72afbf5a297p2@KRT31
1.83e-98FFCP PHASE1:Hg19::chr4:166678786..166678822,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:166678786..166678822, -
1.83e-98FFCP PHASE1:Hg19::chr3:22108366..22108373,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:22108366..22108373, -
1.83e-98FFCP PHASE2:Hg19::chr11:122733093..122733100,+#_313c5c6a1300570bfbc9c72afbf5a297p8@CRTAM
1.83e-98FFCP PHASE1:Hg19::chr1:59775744..59775751,+#_313c5c6a1300570bfbc9c72afbf5a297p24@FGGY
1.83e-98FFCP PHASE1:Hg19::chr4:89680444..89680453,-#_313c5c6a1300570bfbc9c72afbf5a297p31@FAM13A
1.83e-98FFCP PHASE2:Hg19::chr1:2241890..2241895,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:2241890..2241895, -
1.83e-98FFCP PHASE2:Hg19::chr14:77582887..77582896,+#_313c5c6a1300570bfbc9c72afbf5a297p12@TMEM63C
1.83e-98FFCP PHASE1:Hg19::chr16:87376991..87377002,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:87376991..87377002, -
1.83e-98FFCP PHASE1:Hg19::chr5:87777127..87777141,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr5:87777127..87777141, +
1.83e-98FFCP PHASE1:Hg19::chr2:39116996..39117003,+#_313c5c6a1300570bfbc9c72afbf5a297p7@ARHGEF33
1.83e-98FFCP PHASE2:Hg19::chr22:32022290..32022297,-#_313c5c6a1300570bfbc9c72afbf5a297p30@PISD
1.83e-98FFCP PHASE1:Hg19::chr13:100633107..100633110,+#_313c5c6a1300570bfbc9c72afbf5a297p7@AK298232
1.83e-98FFCP PHASE2:Hg19::chr17:39553443..39553452,-#_313c5c6a1300570bfbc9c72afbf5a297p2@KRT31
1.83e-98FFCP PHASE2:Hg19::chr6:72922559..72922568,+#_313c5c6a1300570bfbc9c72afbf5a297p28@RIMS1
1.83e-98FFCP PHASE2:Hg19::chr16:87376991..87377002,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:87376991..87377002, -
1.83e-98FFCP PHASE1:Hg19::chr11:108438755..108438763,-#_313c5c6a1300570bfbc9c72afbf5a297p20@EXPH5
1.83e-98FFCP PHASE2:Hg19::chr7:1277107..1277145,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:1277107..1277145, -
1.83e-98FFCP PHASE1:Hg19::chr20:44935658..44935665,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr20:44935658..44935665, -
1.83e-98FFCP PHASE2:Hg19::chr11:65999337..65999347,+#_313c5c6a1300570bfbc9c72afbf5a297p26@PACS1
1.83e-98FFCP PHASE1:Hg19::chr4:2257102..2257110,-#_313c5c6a1300570bfbc9c72afbf5a297p6@MXD4
1.83e-98FFCP PHASE2:Hg19::chr7:155302128..155302137,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:155302128..155302137, -
1.83e-98FFCP PHASE1:Hg19::chr16:612039..612048,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:612039..612048, -
1.83e-98FFCP PHASE1:Hg19::chr11:31822160..31822172,-#_313c5c6a1300570bfbc9c72afbf5a297p30@PAX6
1.83e-98FFCP PHASE2:Hg19::chr8:17579304..17579321,-#_313c5c6a1300570bfbc9c72afbf5a297p40@MTUS1
1.83e-98FFCP PHASE2:Hg19::chr4:718943..718952,+#_313c5c6a1300570bfbc9c72afbf5a297p10@PCGF3
1.83e-98FFCP PHASE2:Hg19::chr14:79746650..79746659,+#_313c5c6a1300570bfbc9c72afbf5a297p23@NRXN3
1.83e-98FFCP PHASE1:Hg19::chr16:609808..609817,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:609808..609817, +
1.83e-98FFCP PHASE2:Hg19::chr18:8781915..8781932,+#_313c5c6a1300570bfbc9c72afbf5a297p15@CCDC165
1.83e-98FFCP PHASE2:Hg19::chr7:29162047..29162055,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:29162047..29162055, +
1.83e-98FFCP PHASE1:Hg19::chr5:20012479..20012482,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr5:20012479..20012482, -
1.83e-98FFCP PHASE1:Hg19::chr4:71928371..71928382,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:71928371..71928382, +
1.83e-98FFCP PHASE2:Hg19::chr1:206611115..206611119,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:206611115..206611119, +
1.83e-98FFCP PHASE2:Hg19::chr11:64146900..64146905,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:64146900..64146905, +
1.83e-98FFCP PHASE1:Hg19::chr5:161112693..161112696,+#_313c5c6a1300570bfbc9c72afbf5a297p12@GABRA6
1.83e-98FFCP PHASE1:Hg19::chr14:52171354..52171361,+#_313c5c6a1300570bfbc9c72afbf5a297p43@FRMD6
1.83e-98FFCP PHASE2:Hg19::chr16:3656616..3656628,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr16:3656616..3656628, -
1.83e-98FFCP PHASE1:Hg19::chr20:45062029..45062044,+#_313c5c6a1300570bfbc9c72afbf5a297p6@AK054905
1.83e-98FFCP PHASE1:Hg19::chr1:242613002..242613023,-#_313c5c6a1300570bfbc9c72afbf5a297p11@PLD5
1.83e-98FFCP PHASE1:Hg19::chr4:3287626..3287633,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr4:3287626..3287633, +
1.83e-98FFCP PHASE2:Hg19::chr7:29237354..29237369,+#_313c5c6a1300570bfbc9c72afbf5a297p32@CHN2
1.83e-98FFCP PHASE1:Hg19::chr14:77582934..77582947,+#_313c5c6a1300570bfbc9c72afbf5a297p9@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr6:34041419..34041429,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr6:34041419..34041429, -
1.83e-98FFCP PHASE2:Hg19::chrX:71131166..71131173,+#_313c5c6a1300570bfbc9c72afbf5a297p@chrX:71131166..71131173, +
1.83e-98FFCP PHASE2:Hg19::chr1:244355180..244355201,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:244355180..244355201, +
1.83e-98FFCP PHASE1:Hg19::chr17:72667207..72667214,+#_313c5c6a1300570bfbc9c72afbf5a297p12@RAB37
1.83e-98FFCP PHASE1:Hg19::chr6:31334809..31334819,-#_313c5c6a1300570bfbc9c72afbf5a297p1@DHFRP2
1.83e-98FFCP PHASE1:Hg19::chr20:45061641..45061646,-#_313c5c6a1300570bfbc9c72afbf5a297p13@ELMO2
1.83e-98FFCP PHASE2:Hg19::chr1:106499338..106499354,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr1:106499338..106499354, +
1.83e-98FFCP PHASE1:Hg19::chr7:99995188..99995194,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr7:99995188..99995194, +
1.83e-98FFCP PHASE2:Hg19::chr11:133821982..133821993,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr11:133821982..133821993, -
1.83e-98FFCP PHASE1:Hg19::chr3:22062741..22062742,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr3:22062741..22062742, -
1.83e-98FFCP PHASE2:Hg19::chr14:60048980..60048989,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr14:60048980..60048989, -
1.83e-98FFCP PHASE2:Hg19::chr21:32624517..32624531,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:32624517..32624531, -
1.83e-98FFCP PHASE1:Hg19::chr5:159766567..159766580,-#_313c5c6a1300570bfbc9c72afbf5a297p8@CCNJL
1.83e-98FFCP PHASE1:Hg19::chr14:24898471..24898476,-#_313c5c6a1300570bfbc9c72afbf5a297p13@CBLN3
1.83e-98FFCP PHASE1:Hg19::chr19:3056479..3056494,-#_313c5c6a1300570bfbc9c72afbf5a297p27@AES
1.83e-98FFCP PHASE2:Hg19::chr9:109460295..109460307,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr9:109460295..109460307, +
1.83e-98FFCP PHASE2:Hg19::chr21:47314143..47314154,-#_313c5c6a1300570bfbc9c72afbf5a297p@chr21:47314143..47314154, -
1.83e-98FFCP PHASE1:Hg19::chr11:122733093..122733100,+#_313c5c6a1300570bfbc9c72afbf5a297p8@CRTAM
1.83e-98FFCP PHASE1:Hg19::chr19:17992758..17992791,+#_313c5c6a1300570bfbc9c72afbf5a297p@chr19:17992758..17992791, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.