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|def="Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey=11614]
 
|def="Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey=11614]
 
|xref=ABA:PAL;;FMA:83684;;MA:0000889
 
|xref=ABA:PAL;;FMA:83684;;MA:0000889
|is_a=UBERON:0002020;;UBERON:0003528
+
|is_a=UBERON:0003528
 
|synonym="neuraxis pallidum" EXACT [FMA:83684];;"pallidum of neuraxis" EXACT [FMA:83684]
 
|synonym="neuraxis pallidum" EXACT [FMA:83684];;"pallidum of neuraxis" EXACT [FMA:83684]
 
|comment=
 
|comment=
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|obo_creation_date=
 
|obo_creation_date=
 
|subset=
 
|subset=
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 
|has_quality=
 
|has_quality=
 
|located_in=
 
|located_in=
|part_of=UBERON:0002420
+
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002435
 
|is_obsolete=
 
|is_obsolete=
 
|preceded_by=
 
|preceded_by=
 
}}
 
}}

Revision as of 08:07, 26 June 2012

Name:pallidum
Definition:"Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [1]
Xrefs:
links:

ABA:PAL
FMA:83684

MA:0000889
Synonyms: "neuraxis pallidum" EXACT [FMA:83684]
"pallidum of neuraxis" EXACT [FMA:83684]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003528(brain grey matter)



Children

part of:UBERON:0001875 (globus pallidus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006514 (pallidum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_fcdca617c822f176b0920fb665af5ebbp1@GNRH1
1.55e-98FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_fcdca617c822f176b0920fb665af5ebbp1@GNRH1
2.34e-79FFCP PHASE2:Hg19::chr4:16728994..16729009,+#_7cb551099be96768f1bbc050be1b21c5p@chr4:16728994..16729009, +
2.34e-79FFCP PHASE2:Hg19::chr8:112039724..112039729,-#_7cb551099be96768f1bbc050be1b21c5p5@ENST00000524283
2.34e-79FFCP PHASE1:Hg19::chr4:16728994..16729009,+#_7cb551099be96768f1bbc050be1b21c5p@chr4:16728994..16729009, +
2.34e-79FFCP PHASE1:Hg19::chr8:112039724..112039729,-#_7cb551099be96768f1bbc050be1b21c5p5@ENST00000524283
5.22e-79FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_c2517cdfd5aae29ba7f221991615fee5p4@C5orf64
5.22e-79FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_c2517cdfd5aae29ba7f221991615fee5p4@C5orf64
2.84e-66FFCP PHASE2:Hg19::chr8:53314470..53314473,-#_75799ce66d10c83d8eafac9143deaf3dp@chr8:53314470..53314473, -
2.84e-66FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_75799ce66d10c83d8eafac9143deaf3dp@chr8:57353676..57353688, -
2.84e-66FFCP PHASE1:Hg19::chr8:53314470..53314473,-#_75799ce66d10c83d8eafac9143deaf3dp@chr8:53314470..53314473, -
2.84e-66FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_75799ce66d10c83d8eafac9143deaf3dp@chr8:57353676..57353688, -
3.58e-57FFCP PHASE2:Hg19::chr12:57979084..57979088,+#_4bf07519dc6a1aa2558dc5e11d2fc587p5@uc001sos.2
3.58e-57FFCP PHASE1:Hg19::chr12:57979084..57979088,+#_4bf07519dc6a1aa2558dc5e11d2fc587p5@uc001sos.2
4.77e-57FFCP PHASE2:Hg19::chr14:68030467..68030470,+#_a39d031121e397acf5346f99d1641039p@chr14:68030467..68030470, +
4.77e-57FFCP PHASE1:Hg19::chr14:68030467..68030470,+#_a39d031121e397acf5346f99d1641039p@chr14:68030467..68030470, +
6.36e-57FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_3ecfba0a4d674f4b59ed3b93650b15acp@chr2:234077664..234077672, +
6.36e-57FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_3ecfba0a4d674f4b59ed3b93650b15acp@chr2:234077664..234077672, +
2.0e-56FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bfp3@ENST00000413244
2.0e-56FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bfp3@ENST00000413244
2.0e-56FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bfp@chr2:7112752..7112770, +
2.0e-56FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bfp@chr2:7112752..7112770, +
2.42e-50FFCP PHASE2:Hg19::chr2:211384439..211384442,+#_35b2696ea2174e0b840411fe81db4fc4p@chr2:211384439..211384442, +
2.42e-50FFCP PHASE1:Hg19::chr2:211384439..211384442,+#_35b2696ea2174e0b840411fe81db4fc4p@chr2:211384439..211384442, +
2.74e-50FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_3ec27225d118cbfba838994e5a4bbfd9p@chr1:65776926..65776928, +
2.74e-50FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_3ec27225d118cbfba838994e5a4bbfd9p@chr1:65776926..65776928, +
4.0e-50FFCP PHASE2:Hg19::chr2:44994986..44994992,-#_5e3a55b1f2015b2654b0f39a143a3e79p@chr2:44994986..44994992, -
4.0e-50FFCP PHASE1:Hg19::chr2:44994986..44994992,-#_5e3a55b1f2015b2654b0f39a143a3e79p@chr2:44994986..44994992, -
4.52e-50FFCP PHASE1:Hg19::chr1:110546475..110546482,+#_54924227c21d8d9b8fb6aa86b2326f9ep27@AHCYL1
4.52e-50FFCP PHASE2:Hg19::chr1:110546475..110546482,+#_54924227c21d8d9b8fb6aa86b2326f9ep27@AHCYL1
4.52e-50FFCP PHASE1:Hg19::chr12:79843826..79843829,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr12:79843826..79843829, +
4.52e-50FFCP PHASE2:Hg19::chrX:2291152..2291163,-#_54924227c21d8d9b8fb6aa86b2326f9ep@chrX:2291152..2291163, -
4.52e-50FFCP PHASE2:Hg19::chr4:16729019..16729026,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr4:16729019..16729026, +
4.52e-50FFCP PHASE2:Hg19::chr3:196731042..196731058,-#_54924227c21d8d9b8fb6aa86b2326f9ep6@MFI2
4.52e-50FFCP PHASE2:Hg19::chr9:88473657..88473661,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr9:88473657..88473661, +
4.52e-50FFCP PHASE1:Hg19::chr4:16729019..16729026,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr4:16729019..16729026, +
4.52e-50FFCP PHASE1:Hg19::chr3:196731042..196731058,-#_54924227c21d8d9b8fb6aa86b2326f9ep6@MFI2
4.52e-50FFCP PHASE2:Hg19::chr7:11676048..11676067,-#_54924227c21d8d9b8fb6aa86b2326f9ep23@THSD7A
4.52e-50FFCP PHASE1:Hg19::chrX:2291152..2291163,-#_54924227c21d8d9b8fb6aa86b2326f9ep@chrX:2291152..2291163, -
4.52e-50FFCP PHASE1:Hg19::chr7:11676048..11676067,-#_54924227c21d8d9b8fb6aa86b2326f9ep23@THSD7A
4.52e-50FFCP PHASE1:Hg19::chr9:88473657..88473661,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr9:88473657..88473661, +
4.52e-50FFCP PHASE2:Hg19::chr12:79843826..79843829,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr12:79843826..79843829, +
4.52e-50FFCP PHASE1:Hg19::chr1:160111883..160111891,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr1:160111883..160111891, +
4.52e-50FFCP PHASE2:Hg19::chr1:160111883..160111891,+#_54924227c21d8d9b8fb6aa86b2326f9ep@chr1:160111883..160111891, +
5.15e-50FFCP PHASE2:Hg19::chr15:30305145..30305156,+#_6b9ab164aab0a0cc2abaf96f6d33e8d9p@chr15:30305145..30305156, +
5.15e-50FFCP PHASE1:Hg19::chr15:30305145..30305156,+#_6b9ab164aab0a0cc2abaf96f6d33e8d9p@chr15:30305145..30305156, +
8.5e-50FFCP PHASE1:Hg19::chr20:45062233..45062265,+#_778487169797adfdda939adaa449343ap1@AK054905
8.5e-50FFCP PHASE2:Hg19::chr20:45062233..45062265,+#_778487169797adfdda939adaa449343ap1@AK054905
1.09e-49FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_31c852b608e4f5dc118ee04fe2b957b9p10@PTPN5
1.09e-49FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_31c852b608e4f5dc118ee04fe2b957b9p10@PTPN5
2.04e-45FFCP PHASE1:Hg19::chr3:42687264..42687266,-#_2a5e59d3e97e1124d0eb5f8c3448498bp@chr3:42687264..42687266, -
2.04e-45FFCP PHASE2:Hg19::chr3:42687264..42687266,-#_2a5e59d3e97e1124d0eb5f8c3448498bp@chr3:42687264..42687266, -
7.83e-45FFCP PHASE2:Hg19::chr7:92123292..92123295,+#_ac36395ac55d5068f2ed7a904a04b293p@chr7:92123292..92123295, +
7.83e-45FFCP PHASE2:Hg19::chr4:648979..648991,-#_ac36395ac55d5068f2ed7a904a04b293p1@ENST00000489312
7.83e-45FFCP PHASE1:Hg19::chr1:109924481..109924486,-#_ac36395ac55d5068f2ed7a904a04b293p@chr1:109924481..109924486, -
7.83e-45FFCP PHASE2:Hg19::chr1:109924481..109924486,-#_ac36395ac55d5068f2ed7a904a04b293p@chr1:109924481..109924486, -
7.83e-45FFCP PHASE1:Hg19::chr7:92123292..92123295,+#_ac36395ac55d5068f2ed7a904a04b293p@chr7:92123292..92123295, +
7.83e-45FFCP PHASE1:Hg19::chr4:648979..648991,-#_ac36395ac55d5068f2ed7a904a04b293p1@ENST00000489312
9.79e-45FFCP PHASE2:Hg19::chr8:53313114..53313126,-#_30f25d9d821c2ef09c7c89198d38e7b7p@chr8:53313114..53313126, -
9.79e-45FFCP PHASE1:Hg19::chr8:53313114..53313126,-#_30f25d9d821c2ef09c7c89198d38e7b7p@chr8:53313114..53313126, -
1.22e-44FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_29a14953f0998f34b7604f85c25138e0p@chr7:67899920..67899958, -
1.22e-44FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_29a14953f0998f34b7604f85c25138e0p@chr7:67899920..67899958, -
1.22e-44FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_29a14953f0998f34b7604f85c25138e0p@chr3:16851273..16851310, +
1.22e-44FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_29a14953f0998f34b7604f85c25138e0p@chr3:16851273..16851310, +
1.22e-44FFCP PHASE2:Hg19::chr8:53312268..53312283,-#_29a14953f0998f34b7604f85c25138e0p@chr8:53312268..53312283, -
1.22e-44FFCP PHASE1:Hg19::chr8:53312268..53312283,-#_29a14953f0998f34b7604f85c25138e0p@chr8:53312268..53312283, -
1.53e-44FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_2e57326e6161ca889d37e26403b111b5p5@ANO3
1.53e-44FFCP PHASE2:Hg19::chrX:119589796..119589800,-#_2e57326e6161ca889d37e26403b111b5p@chrX:119589796..119589800, -
1.53e-44FFCP PHASE1:Hg19::chrX:119589796..119589800,-#_2e57326e6161ca889d37e26403b111b5p@chrX:119589796..119589800, -
1.53e-44FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_2e57326e6161ca889d37e26403b111b5p5@ANO3
1.91e-44FFCP PHASE1:Hg19::chr5:148442824..148442835,+#_293fedc4198402bccca13e66349aa38cp4@ENST00000515519
1.91e-44FFCP PHASE2:Hg19::chr9:139907538..139907555,-#_293fedc4198402bccca13e66349aa38cp25@ABCA2
1.91e-44FFCP PHASE2:Hg19::chr7:35756400..35756409,+#_293fedc4198402bccca13e66349aa38cp4@ENST00000458087, p4@uc003tew.1
1.91e-44FFCP PHASE1:Hg19::chr7:35756400..35756409,+#_293fedc4198402bccca13e66349aa38cp4@ENST00000458087, p4@uc003tew.1
1.91e-44FFCP PHASE1:Hg19::chr9:139907538..139907555,-#_293fedc4198402bccca13e66349aa38cp25@ABCA2
1.91e-44FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_293fedc4198402bccca13e66349aa38cp@chr17:19390234..19390251, +
1.91e-44FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_293fedc4198402bccca13e66349aa38cp@chr17:19390234..19390251, +
1.91e-44FFCP PHASE2:Hg19::chr5:148442824..148442835,+#_293fedc4198402bccca13e66349aa38cp4@ENST00000515519
2.98e-44FFCP PHASE2:Hg19::chr3:50306390..50306399,+#_cdb24e23965af03eabfef9555b0bf12ap8@SEMA3B
2.98e-44FFCP PHASE1:Hg19::chr3:50306390..50306399,+#_cdb24e23965af03eabfef9555b0bf12ap8@SEMA3B
2.98e-44FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_cdb24e23965af03eabfef9555b0bf12ap28@ARPP21
2.98e-44FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_cdb24e23965af03eabfef9555b0bf12ap28@ARPP21
1.34e-40FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_0a5aba0d677de034908ef16c239f496fp@chr19:35789028..35789044, +
1.34e-40FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_0a5aba0d677de034908ef16c239f496fp@chr19:35789028..35789044, +
2.01e-40FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_6d1bd0e11699ae7602ca76a79f5af94cp@chr6:166076645..166076657, -
2.01e-40FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_6d1bd0e11699ae7602ca76a79f5af94cp@chr6:166076645..166076657, -
2.46e-40FFCP PHASE1:Hg19::chr16:51302023..51302029,-#_d5bd6e1f74ac29acdc8e92c4f68478cdp@chr16:51302023..51302029, -
2.46e-40FFCP PHASE2:Hg19::chr16:51302023..51302029,-#_d5bd6e1f74ac29acdc8e92c4f68478cdp@chr16:51302023..51302029, -
3.01e-40FFCP PHASE1:Hg19::chr11:119846813..119846826,+#_f63fca0cad51c568a0beeb6297693110p@chr11:119846813..119846826, +
3.01e-40FFCP PHASE2:Hg19::chr11:119846813..119846826,+#_f63fca0cad51c568a0beeb6297693110p@chr11:119846813..119846826, +
3.68e-40FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_70fe223d9776c56246d6d88088a66448p6@PTPN5
3.68e-40FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_70fe223d9776c56246d6d88088a66448p6@PTPN5
3.68e-40FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_70fe223d9776c56246d6d88088a66448p2@ENST00000413244
3.68e-40FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_70fe223d9776c56246d6d88088a66448p2@ENST00000413244
4.49e-40FFCP PHASE2:Hg19::chr22:50431522..50431538,-#_52d059b90af7dd5d02e7bc0d1de4580cp@chr22:50431522..50431538, -
4.49e-40FFCP PHASE1:Hg19::chr22:50431522..50431538,-#_52d059b90af7dd5d02e7bc0d1de4580cp@chr22:50431522..50431538, -
4.49e-40FFCP PHASE1:Hg19::chr1:84413166..84413168,-#_52d059b90af7dd5d02e7bc0d1de4580cp4@TTLL7
4.49e-40FFCP PHASE2:Hg19::chr1:84413166..84413168,-#_52d059b90af7dd5d02e7bc0d1de4580cp4@TTLL7
4.49e-40FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_52d059b90af7dd5d02e7bc0d1de4580cp@chr6:33161034..33161047, -
4.49e-40FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_52d059b90af7dd5d02e7bc0d1de4580cp@chr6:33161034..33161047, -