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(Created page with "{{UBERON |id=UBERON:0007135 |name=neural keel |namespace= |def="An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the...")
 
 
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{{UBERON
 
{{UBERON
|id=UBERON:0007135
+
|alt_id=
|name=neural keel
 
|namespace=
 
|def="An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576]
 
|xref=EFO:0003497;;TAO:0000131;;ZFA:0000131;;ZFIN:ZDB-ANAT-010921-559
 
|is_a=UBERON:0000479;;UBERON:0004121
 
|synonym="presumptive central nervous system" RELATED [ZFA:0000131]
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576]
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=UBERON:0003075
 
|develops_from=UBERON:0003075
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0007135
 +
|is_a=UBERON:0016879
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=neural keel
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+
|preceded_by=
 +
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. Kimmel et al, 1995.[TAO]" xsd:string
 +
|subset=
 +
|synonym="presumptive central nervous system" RELATED [ZFA:0000131]
 +
|union_of=
 +
|xref=EFO:0003497;;TAO:0000131;;ZFA:0000131;;ZFIN:ZDB-ANAT-010921-559
 
}}
 
}}

Latest revision as of 09:00, 12 September 2014

Name:neural keel
Namespace:FANTOM
Definition:"An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576]
Xrefs:
links:

EFO:0003497
TAO:0000131
ZFA:0000131

ZFIN:ZDB-ANAT-010921-559
Synonyms: "presumptive central nervous system" RELATED [ZFA:0000131]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0016879(future central nervous system)
develops_from:UBERON:0003075(neural plate)



Children

develops from:UBERON:0005068 (neural rod)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007135 (neural keel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
9.5e-145FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_bffd4f182e02d689193ddda4f549174fp2@RFX4
9.5e-145FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_bffd4f182e02d689193ddda4f549174fp2@RFX4
4.41e-144FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_21005c1e01cc5f58b6f3be7fd1197abfp@chr5:87439352..87439386, -
4.41e-144FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_21005c1e01cc5f58b6f3be7fd1197abfp@chr5:87439352..87439386, -
5.06e-144FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_693db407439df7503c3d820ccaad35b9p1@ENST00000412957
5.06e-144FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_693db407439df7503c3d820ccaad35b9p1@ENST00000412957
1.1e-143FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_5f38ddf1249facd42a1853554cb24d10p3@CTNND2
1.1e-143FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_5f38ddf1249facd42a1853554cb24d10p3@CTNND2
1.17e-142FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_3290ca89b1b5f52d91218a97f2d92bcbp2@GABRG1
1.17e-142FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_3290ca89b1b5f52d91218a97f2d92bcbp2@GABRG1
2.68e-142FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_caa93f8a4566e805b3619a240b6aaec1p3@NRXN1
2.68e-142FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_caa93f8a4566e805b3619a240b6aaec1p3@NRXN1
1.04e-141FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_51d01800233364ec9a4b40b1e9536907p4@APC
1.04e-141FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_51d01800233364ec9a4b40b1e9536907p4@APC
1.18e-141FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_58ad8d60cf6ea71ac9a275872bda2b1bp8@CTNND2
1.18e-141FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_58ad8d60cf6ea71ac9a275872bda2b1bp8@CTNND2
7.98e-141FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_e9b0a2f8065ac3970a9262d36925edcdp7@DTNA
7.98e-141FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_e9b0a2f8065ac3970a9262d36925edcdp7@DTNA
1.0e-140FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_dae26830ca3e46428640ebdc6a1ddfbbp2@KCNJ16
1.0e-140FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_dae26830ca3e46428640ebdc6a1ddfbbp2@KCNJ16
2.58e-140FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_e00075e305e9b5f420987510bd63b2e9p@chr5:146314142..146314146, -
2.58e-140FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_e00075e305e9b5f420987510bd63b2e9p@chr5:146314142..146314146, -
1.46e-139FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_ddbe50a2ec047fb0e3c9cad3bad6640fp1@RFX4
1.46e-139FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_ddbe50a2ec047fb0e3c9cad3bad6640fp1@RFX4
9.16e-139FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_cb6587cb63b1f33f9037eb2e24977117p4@RFX4
9.16e-139FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_cb6587cb63b1f33f9037eb2e24977117p4@RFX4
1.47e-138FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_dd1872ec29a5e3641ccbde152d05be89p9@PRKACB
1.47e-138FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_dd1872ec29a5e3641ccbde152d05be89p9@PRKACB
4.62e-138FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_e29598b76d16e503fb894adf8e7f6450p2@CTNND2
4.62e-138FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_e29598b76d16e503fb894adf8e7f6450p2@CTNND2
1.71e-137FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_4d6819f12a8c76f9923466deb79dac99p@chr15:46702499..46702523, +
1.71e-137FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_4d6819f12a8c76f9923466deb79dac99p@chr15:46702499..46702523, +
5.75e-137FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_adc6a5a57fc37a2a5e89961b00a3bc12p17@PRKACB
5.75e-137FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_adc6a5a57fc37a2a5e89961b00a3bc12p17@PRKACB
6.55e-137FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_e0ec2b8ba8cb3baefae9362a21505788p17@NTRK2
6.55e-137FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_e0ec2b8ba8cb3baefae9362a21505788p17@NTRK2
8.93e-137FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_98d6f26b7c1c638c756b04ea374ac4cfp@chr6:80131670..80131724, +
8.93e-137FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_98d6f26b7c1c638c756b04ea374ac4cfp@chr6:80131670..80131724, +
2.51e-136FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_3bf61b04f4489ae76bd4030176bcbdecp4@SLC1A2
2.51e-136FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_3bf61b04f4489ae76bd4030176bcbdecp4@SLC1A2
2.84e-136FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_5be704c9be28b9e8de715ed2003b1af9p1@ATP10B
2.84e-136FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_5be704c9be28b9e8de715ed2003b1af9p1@ATP10B
3.14e-136FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_6489f09240679bbec8ec39b8532e2c5ep8@PRKCZ
3.14e-136FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_6489f09240679bbec8ec39b8532e2c5ep8@PRKCZ
4.26e-136FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_516e050e4b45889383a650e336c812a0p9@GPM6B
4.26e-136FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_516e050e4b45889383a650e336c812a0p9@GPM6B
5.24e-136FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_570347cc3dcf2ce126edaa201eacb288p5@AQP4
5.24e-136FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_570347cc3dcf2ce126edaa201eacb288p5@AQP4
5.54e-136FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_30fb6a9cde45d25b9a685d6056e30aeap1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
5.54e-136FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_30fb6a9cde45d25b9a685d6056e30aeap1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
9.78e-136FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_a8e81832de33af1b1a7b113d2f390ab5p8@DST
9.78e-136FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_a8e81832de33af1b1a7b113d2f390ab5p8@DST
1.52e-135FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_d1a97148f2eb4cc980c6ef384310084dp@chr7:47420733..47420758, -
1.52e-135FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_d1a97148f2eb4cc980c6ef384310084dp@chr7:47420733..47420758, -
2.32e-135FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_962f8a43cd6ff43125c28e8ee151dad2p1@ANKFN1
2.32e-135FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_962f8a43cd6ff43125c28e8ee151dad2p1@ANKFN1
3.21e-135FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_10cce8f59166f7d04f8df7333af97b91p1@GABRG1
3.21e-135FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_10cce8f59166f7d04f8df7333af97b91p1@GABRG1
5.25e-135FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_bcd156b85315bf816f1b02030c11a391p@chr17:7558857..7558903, +
5.25e-135FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_bcd156b85315bf816f1b02030c11a391p@chr17:7558857..7558903, +
8.03e-135FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_92b41ac5891df890f33ea003bb69d9a2p3@SFXN5
8.03e-135FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_92b41ac5891df890f33ea003bb69d9a2p3@SFXN5
1.91e-134FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_0c196394ee5e3a3f00f83d87c549cda0p3@GABRG1
1.91e-134FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_0c196394ee5e3a3f00f83d87c549cda0p3@GABRG1
2.97e-134FFCP PHASE1:Hg19::chr18:32398400..32398416,+#_f99f6cda93dec161a9017b132aef16e8p10@DTNA
2.97e-134FFCP PHASE2:Hg19::chr18:32398400..32398416,+#_f99f6cda93dec161a9017b132aef16e8p10@DTNA
4.25e-134FFCP PHASE2:Hg19::chr18:32398372..32398394,+#_6a58df10971dd44f101ccf25950b65c3p5@DTNA
4.25e-134FFCP PHASE1:Hg19::chr18:32398372..32398394,+#_6a58df10971dd44f101ccf25950b65c3p5@DTNA
4.84e-134FFCP PHASE1:Hg19::chr17:42989121..42989166,-#_445ed09f8c474fcb72bf22064d6a00f8p7@GFAP
4.84e-134FFCP PHASE2:Hg19::chr17:42989121..42989166,-#_445ed09f8c474fcb72bf22064d6a00f8p7@GFAP
5.15e-134FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_a142d173e6c8defac22b1fdc6881f981p2@PAQR6
5.15e-134FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_a142d173e6c8defac22b1fdc6881f981p2@PAQR6
1.37e-133FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_d2ea5ff04f52fd32745186d2aa94c478p2@uc002fch.1
1.37e-133FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_d2ea5ff04f52fd32745186d2aa94c478p2@uc002fch.1
1.42e-133FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_c32266f8cbb4b92b26a297ecbb6cc1d2p2@SRCIN1
1.42e-133FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_c32266f8cbb4b92b26a297ecbb6cc1d2p2@SRCIN1
1.45e-133FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_803187be572c9d9a85e0a026c79780f2p4@ARHGEF26-AS1
1.45e-133FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_803187be572c9d9a85e0a026c79780f2p4@ARHGEF26-AS1
2.38e-133FFCP PHASE2:Hg19::chr12:41221684..41221704,+#_d3125a7a7ca9a9cb9327637723f78c32p5@CNTN1
2.38e-133FFCP PHASE1:Hg19::chr12:41221684..41221704,+#_d3125a7a7ca9a9cb9327637723f78c32p5@CNTN1
2.91e-133FFCP PHASE1:Hg19::chr5:11384929..11384947,-#_9e0e56ef56fba52bf21b7d3ae2e598e4p15@CTNND2
2.91e-133FFCP PHASE2:Hg19::chr5:11384929..11384947,-#_9e0e56ef56fba52bf21b7d3ae2e598e4p15@CTNND2
3.31e-133FFCP PHASE1:Hg19::chr12:57980138..57980165,+#_2b7e46966881d107a7fd7703d2f72615p3@KIF5A
3.31e-133FFCP PHASE2:Hg19::chr12:57980138..57980165,+#_2b7e46966881d107a7fd7703d2f72615p3@KIF5A
3.45e-133FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_cf96514840eb082016365407af75941dp1@GPR61
3.45e-133FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_cf96514840eb082016365407af75941dp1@GPR61
1.11e-132FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_da8b9e3d3cdf8b683567fbe8ef5d935ep5@NKAIN3
1.11e-132FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_da8b9e3d3cdf8b683567fbe8ef5d935ep5@NKAIN3
1.25e-132FFCP PHASE1:Hg19::chr15:30261066..30261096,-#_2d66abc001938cc8d67e262bf2c8914ep12@TJP1
1.25e-132FFCP PHASE2:Hg19::chr15:30261066..30261096,-#_2d66abc001938cc8d67e262bf2c8914ep12@TJP1
1.94e-132FFCP PHASE2:Hg19::chr17:7560542..7560578,+#_622796955bd15fcfbcfa2e57289b14bep4@ATP1B2
1.94e-132FFCP PHASE1:Hg19::chr17:7560542..7560578,+#_622796955bd15fcfbcfa2e57289b14bep4@ATP1B2
2.17e-132FFCP PHASE1:Hg19::chr7:29519599..29519612,+#_3423642c280338ac3563ff3f37eda4e7p9@CHN2
2.17e-132FFCP PHASE2:Hg19::chr7:29519599..29519612,+#_3423642c280338ac3563ff3f37eda4e7p9@CHN2
2.85e-132FFCP PHASE1:Hg19::chr12:102060112..102060135,+#_f14d1ea5b8d32fd768d0bef2b2d496e7p4@MYBPC1
2.85e-132FFCP PHASE2:Hg19::chr12:102060112..102060135,+#_f14d1ea5b8d32fd768d0bef2b2d496e7p4@MYBPC1
3.19e-132FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_b6c2ef80a430be14cc564438425e64a5p1@LOC100289347
3.19e-132FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_b6c2ef80a430be14cc564438425e64a5p1@LOC100289347
4.04e-132FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_ab410c798a12924aee51cc9a981b94c5p9@MAP2
4.04e-132FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_ab410c798a12924aee51cc9a981b94c5p9@MAP2










Property "Property value" (as page type) with input value "UBPROP:0000001 "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.