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Revision as of 08:25, 15 June 2012

Name:developing epithelial placode
Definition:"A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF]
Xrefs:
links:

AEO:0000112
AEO:0000218

EHDAA2:0003112
Synonyms: "epithelial placode" EXACT [AEO:0000112]
Alt_id: EHDAA2:0003112

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000485(simple columnar epithelium),UBERON:0001048(primordium)



Children

is a:UBERON:0001049 (neural tube),UBERON:0003050 (olfactory placode),UBERON:0003051 (ear vesicle),UBERON:0003071 (eye primordium),UBERON:0003075 (neural plate),UBERON:0003894 (liver primordium),UBERON:0004209 (renal vesicle),UBERON:0005081 (ureter ureteric bud),UBERON:0010532 (primitive nephron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007497 (developing epithelial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_bb89b382ec01bf7b8e5f3f2edd211187p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_bb89b382ec01bf7b8e5f3f2edd211187p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_bb89b382ec01bf7b8e5f3f2edd211187p@chr8:90366581..90366594, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_43170746cb22dd0005a9ffd1c223da97p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_43170746cb22dd0005a9ffd1c223da97p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_43170746cb22dd0005a9ffd1c223da97p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_43170746cb22dd0005a9ffd1c223da97p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_43170746cb22dd0005a9ffd1c223da97p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_43170746cb22dd0005a9ffd1c223da97p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_43170746cb22dd0005a9ffd1c223da97p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_43170746cb22dd0005a9ffd1c223da97p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_43170746cb22dd0005a9ffd1c223da97p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_43170746cb22dd0005a9ffd1c223da97p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_43170746cb22dd0005a9ffd1c223da97p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_43170746cb22dd0005a9ffd1c223da97p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_43170746cb22dd0005a9ffd1c223da97p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_43170746cb22dd0005a9ffd1c223da97p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_43170746cb22dd0005a9ffd1c223da97p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_43170746cb22dd0005a9ffd1c223da97p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_43170746cb22dd0005a9ffd1c223da97p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_43170746cb22dd0005a9ffd1c223da97p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_43170746cb22dd0005a9ffd1c223da97p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_43170746cb22dd0005a9ffd1c223da97p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_43170746cb22dd0005a9ffd1c223da97p3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_43170746cb22dd0005a9ffd1c223da97p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_43170746cb22dd0005a9ffd1c223da97p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_43170746cb22dd0005a9ffd1c223da97p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_43170746cb22dd0005a9ffd1c223da97p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_43170746cb22dd0005a9ffd1c223da97p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_43170746cb22dd0005a9ffd1c223da97p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_43170746cb22dd0005a9ffd1c223da97p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_43170746cb22dd0005a9ffd1c223da97p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_43170746cb22dd0005a9ffd1c223da97p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_43170746cb22dd0005a9ffd1c223da97p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_43170746cb22dd0005a9ffd1c223da97p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_43170746cb22dd0005a9ffd1c223da97p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_43170746cb22dd0005a9ffd1c223da97p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_43170746cb22dd0005a9ffd1c223da97p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_43170746cb22dd0005a9ffd1c223da97p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_43170746cb22dd0005a9ffd1c223da97p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_43170746cb22dd0005a9ffd1c223da97p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_43170746cb22dd0005a9ffd1c223da97p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_43170746cb22dd0005a9ffd1c223da97p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_43170746cb22dd0005a9ffd1c223da97p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_43170746cb22dd0005a9ffd1c223da97p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_43170746cb22dd0005a9ffd1c223da97p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_43170746cb22dd0005a9ffd1c223da97p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_43170746cb22dd0005a9ffd1c223da97p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_43170746cb22dd0005a9ffd1c223da97p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_43170746cb22dd0005a9ffd1c223da97p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_43170746cb22dd0005a9ffd1c223da97p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_43170746cb22dd0005a9ffd1c223da97p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_43170746cb22dd0005a9ffd1c223da97p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_43170746cb22dd0005a9ffd1c223da97p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_43170746cb22dd0005a9ffd1c223da97p1@Otog
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_43170746cb22dd0005a9ffd1c223da97p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_43170746cb22dd0005a9ffd1c223da97p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_43170746cb22dd0005a9ffd1c223da97p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_43170746cb22dd0005a9ffd1c223da97p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_43170746cb22dd0005a9ffd1c223da97p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_43170746cb22dd0005a9ffd1c223da97p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_43170746cb22dd0005a9ffd1c223da97p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_43170746cb22dd0005a9ffd1c223da97p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_43170746cb22dd0005a9ffd1c223da97p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_43170746cb22dd0005a9ffd1c223da97p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_43170746cb22dd0005a9ffd1c223da97p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_43170746cb22dd0005a9ffd1c223da97p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_43170746cb22dd0005a9ffd1c223da97p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_43170746cb22dd0005a9ffd1c223da97p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_43170746cb22dd0005a9ffd1c223da97p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_43170746cb22dd0005a9ffd1c223da97p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_43170746cb22dd0005a9ffd1c223da97p41@Cacnb2
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_43170746cb22dd0005a9ffd1c223da97p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_43170746cb22dd0005a9ffd1c223da97p21@Espn