Personal tools

UBERON:0008846: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=skeletal ligament
|name=skeletal ligament
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001434
|part_of=UBERON:0001434

Latest revision as of 18:04, 12 September 2014

Name:skeletal ligament
Namespace:FANTOM
Definition:"Ligament organ that primarily consists of regular dense connective tissue aggregated into fasciculi; connects bone and cartilage organs. Examples: sutural ligament, ligament of pinna, tarsal ligament." [FMA:25624, Wikipedia:Ligament#Articular_ligaments]
Xrefs:
links:

AAO:0010444
AEO:0000090
EHDAA2:0003232
EV:0100144
FMA:25624
GAID:118
[ 200px-Knee_diagram.svg.png 200px-Knee_diagram.svg.png]
MA:0003005
MESH:A.02.513
SCTID:410744003

VSAO:0000072
Synonyms: "articular larua" EXACT [Wikipedia:Ligament]
"articular ligament" EXACT [Wikipedia:Ligament]
"fibrous ligament" RELATED [Wikipedia:Ligament]
"ligament" BROAD [VSAO:0000072, ZFA:0001675]
"true ligament" EXACT [Wikipedia:Ligament]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000211(ligament)
part_of:UBERON:0001434(skeletal system)



Children

is a:UBERON:0003701 (calcaneal tendon),UBERON:0011088 (ligament of knee joint)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008846 (skeletal ligament), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.