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Difference between revisions of "UBERON:0010886"

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{{UBERON
 
{{UBERON
|id=UBERON:0010886
+
|alt_id=
|name=hindlimb bone pre-cartilage condensation
 
|namespace=
 
|def=
 
|xref=
 
|is_a=UBERON:0003860;;UBERON:0010882
 
|synonym=
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def=
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0010886
 +
|is_a=UBERON:0003860 ;;UBERON:0005866 ;;UBERON:0015022
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=UBERON:0001441
+
|name=hindlimb bone pre-cartilage condensation
 +
|namespace=
 +
|obo_creation_date=
 +
|part_of=UBERON:0002103;;UBERON:0001441;;UBERON:0002103
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym=
 +
|union_of=
 +
|xref=
 
}}
 
}}

Revision as of 02:51, 12 September 2014

Name:hindlimb bone pre-cartilage condensation

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003860(hindlimb mesenchyme),UBERON:0005866(pre-cartilage condensation),UBERON:0015022(hindlimb endochondral element)
part_of:UBERON:0002103(hindlimb),UBERON:0001441(hindlimb skeleton),UBERON:0002103(hindlimb)



Children

is a:UBERON:0006234 (femur pre-cartilage condensation)
develops from:UBERON:0010885 (hindlimb cartilage element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010886 (hindlimb bone pre-cartilage condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_e82fab63752f0e033babb07214322e9fp26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_e82fab63752f0e033babb07214322e9fp26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_d6050ca4e6466e0748a54492d25beef6p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_d6050ca4e6466e0748a54492d25beef6p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_d6050ca4e6466e0748a54492d25beef6p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_d6050ca4e6466e0748a54492d25beef6p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_d6050ca4e6466e0748a54492d25beef6p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_d6050ca4e6466e0748a54492d25beef6p@chr2:32482372..32482381, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_22041f4d88f3efc40297170dfce89b15p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_22041f4d88f3efc40297170dfce89b15p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_fefd48c98c3e9368bbe26390e5e0c731p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_fefd48c98c3e9368bbe26390e5e0c731p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_d3bb4e19293dd28c09d8b24e00f034b9p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_d3bb4e19293dd28c09d8b24e00f034b9p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_d3bb4e19293dd28c09d8b24e00f034b9p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_d3bb4e19293dd28c09d8b24e00f034b9p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_d3bb4e19293dd28c09d8b24e00f034b9p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_d3bb4e19293dd28c09d8b24e00f034b9p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_d3bb4e19293dd28c09d8b24e00f034b9p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_d3bb4e19293dd28c09d8b24e00f034b9p@chr16:24096441..24096449, +
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_e4268e82225665d9d57dd93490e0a594p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_e4268e82225665d9d57dd93490e0a594p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_57768e6f302544a0922d596810e6964ep@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_57768e6f302544a0922d596810e6964ep@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_dd33fa09077ee9cf200fbcf1db84f17dp3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_dd33fa09077ee9cf200fbcf1db84f17dp3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_6252c090d5c851f20ab8d6fd67e6e149p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_6252c090d5c851f20ab8d6fd67e6e149p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_d835a187478faab925530446546fabf6p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_d835a187478faab925530446546fabf6p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_8173bf7d1284492a46aa30b79dea861bp2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_8173bf7d1284492a46aa30b79dea861bp2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_1fe491758e671a38d97f8d014e081487p3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_1fe491758e671a38d97f8d014e081487p3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_b9126f22d030323ceb5ed7a8a6f8ef4fp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_b9126f22d030323ceb5ed7a8a6f8ef4fp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_b9126f22d030323ceb5ed7a8a6f8ef4fp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_b9126f22d030323ceb5ed7a8a6f8ef4fp2@Oscar
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_b3679d4d4fa3f51671939764b9958ab5p4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_b3679d4d4fa3f51671939764b9958ab5p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_b3679d4d4fa3f51671939764b9958ab5p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_b3679d4d4fa3f51671939764b9958ab5p@chr11:75409652..75409664, +
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_7172e212ee29c485aa5ad9580005bd59p6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_7172e212ee29c485aa5ad9580005bd59p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_8a80c57217b84cf02151fa4eaca22b9fp@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_8a80c57217b84cf02151fa4eaca22b9fp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_8a80c57217b84cf02151fa4eaca22b9fp@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_8a80c57217b84cf02151fa4eaca22b9fp@chr8:126415826..126415839, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_2ba184caeabc066b03544b0eb6315a52p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_2ba184caeabc066b03544b0eb6315a52p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_e188652a6c660c29619c85152338659ep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_e188652a6c660c29619c85152338659ep@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_e188652a6c660c29619c85152338659ep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_e188652a6c660c29619c85152338659ep@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_454f199d6597cf71ef381c9133d44f7fp@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_454f199d6597cf71ef381c9133d44f7fp@chr7:133590998..133591009, -
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_5e25a31a309863bbaa799a4dbb7a5c6bp2@Myoz3
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_5e25a31a309863bbaa799a4dbb7a5c6bp2@Myoz3
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_4e64090cd3ad8b440eb1820aff7a15d2p2@Myh4
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_4e64090cd3ad8b440eb1820aff7a15d2p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_85ae49b5a97992856d940f314aee0c21p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_85ae49b5a97992856d940f314aee0c21p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_99b94c295908681df9cf5fd38046ab4ap1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_99b94c295908681df9cf5fd38046ab4ap@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_99b94c295908681df9cf5fd38046ab4ap1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_99b94c295908681df9cf5fd38046ab4ap@chr11:67056544..67056589, -
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_cde61bcb33e62a2b55edd549ba70a6d0p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_cde61bcb33e62a2b55edd549ba70a6d0p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_cde61bcb33e62a2b55edd549ba70a6d0p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_cde61bcb33e62a2b55edd549ba70a6d0p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_24cc6cbe0725549d28b826b160a055cbp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_24cc6cbe0725549d28b826b160a055cbp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_b8d07b99e5c39e9c32b1b5c9f04d7d94p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_b8d07b99e5c39e9c32b1b5c9f04d7d94p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_a3ea9f89a29fc6f8e25a7deca274ebcfp@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_a3ea9f89a29fc6f8e25a7deca274ebcfp@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_a6bf0e6485e8f0a6d65b285ed04e950bp1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_a6bf0e6485e8f0a6d65b285ed04e950bp1@Siglec15
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_5528827550105d03a558bc2c9374f437p6@Atp2a1
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_5528827550105d03a558bc2c9374f437p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_d4c078b58a28f8f02198918acd5ac2cdp7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_d4c078b58a28f8f02198918acd5ac2cdp7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_d3a2c788548d536d059cb66eef7e1d22p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_d3a2c788548d536d059cb66eef7e1d22p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_d3a2c788548d536d059cb66eef7e1d22p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_d3a2c788548d536d059cb66eef7e1d22p@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_57ef239755ba6aae9824778f46309e5ap4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_57ef239755ba6aae9824778f46309e5ap4@Sgca
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_43e40aba3844b6dd87677eba5ecbb07fp1@Mepe
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_43e40aba3844b6dd87677eba5ecbb07fp1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_d733def68483d1b8f2080da8b8f93da2p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_d733def68483d1b8f2080da8b8f93da2p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_d733def68483d1b8f2080da8b8f93da2p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_d733def68483d1b8f2080da8b8f93da2p2@Tm4sf19
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_61763708c90e7071ca60548e88b4c9c6p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_61763708c90e7071ca60548e88b4c9c6p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_61763708c90e7071ca60548e88b4c9c6p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_61763708c90e7071ca60548e88b4c9c6p5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_087ca1fa72647d65f57cb3dac2d15c15p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_087ca1fa72647d65f57cb3dac2d15c15p2@Siglec15