Personal tools

UBERON:0011216

From FANTOM5_SSTAR

Revision as of 09:10, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:organ system subdivision
Namespace:FANTOM
Definition:"Anatomical structure, which consists of a specific set of the members of (predominantly) one organ or organ part subclass interconnected by zones of continuity or body substances; is demarcated from other subdivisions of the same organ system by one or more zones of continuity or anatomical lines; together with other subdivisions of the same organ system, it constitutes an organ system. Examples: rib cage, facial skeleton, portal system, central nervous system, upper respiratory tract, muscle group of back." [FMA:67509]
Xrefs:
links:

FBbt:00007330

FMA:67509

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000477(anatomical cluster)
part_of:UBERON:0000467(anatomical system)



Children

is a:UBERON:0000010 (peripheral nervous system),UBERON:0000011 (parasympathetic nervous system),UBERON:0000012 (somatic nervous system),UBERON:0000075 (subdivision of skeletal system),UBERON:0001017 (central nervous system),UBERON:0002199 (integument),UBERON:0002410 (autonomic nervous system),UBERON:0010912 (subdivision of skeleton)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0011216 (organ system subdivision), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
7.65e-48FFCP PHASE1:Hg19::chr5:173472676..173472732,+#_e71c8dc7b887e7cdb3c2a9d5ae040c2ep1@HMP19
7.65e-48FFCP PHASE2:Hg19::chr5:173472676..173472732,+#_e71c8dc7b887e7cdb3c2a9d5ae040c2ep1@HMP19
1.34e-46FFCP PHASE2:Hg19::chr5:175298573..175298628,+#_623633fe50a3b6c98aa1ef9af9ecc2bdp1@CPLX2
1.34e-46FFCP PHASE1:Hg19::chr5:175298573..175298628,+#_623633fe50a3b6c98aa1ef9af9ecc2bdp1@CPLX2
1.49e-46FFCP PHASE1:Hg19::chr6:24126427..24126497,+#_6bc652c694f9799d53e03869c976b3fap1@NRSN1
1.49e-46FFCP PHASE2:Hg19::chr6:24126427..24126497,+#_6bc652c694f9799d53e03869c976b3fap1@NRSN1
1.7e-46FFCP PHASE1:Hg19::chr14:60097524..60097538,-#_356d7c2088a4d5cb7c42cfc69b4b094dp3@RTN1
1.7e-46FFCP PHASE2:Hg19::chr14:60097524..60097538,-#_356d7c2088a4d5cb7c42cfc69b4b094dp3@RTN1
2.14e-46FFCP PHASE1:Hg19::chr7:158380468..158380523,-#_b74f0c8ab0f40c4e60c89b6a8df28b02p2@PTPRN2
2.14e-46FFCP PHASE2:Hg19::chr7:158380468..158380523,-#_b74f0c8ab0f40c4e60c89b6a8df28b02p2@PTPRN2
3.89e-46FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_6918972bb8a64a510bd7e9edc8857d16p9@MAP2
3.89e-46FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_6918972bb8a64a510bd7e9edc8857d16p9@MAP2
3.4e-45FFCP PHASE1:Hg19::chr7:36446001..36446028,+#_47ff3ad8fcf48e9b4abb7c95f767d99fp4@ANLN
3.4e-45FFCP PHASE2:Hg19::chr7:36446001..36446028,+#_47ff3ad8fcf48e9b4abb7c95f767d99fp4@ANLN
4.96e-45FFCP PHASE2:Hg19::chr17:10741392..10741423,-#_82d7c8e98e172692c22e295c539afb01p1@PIRT
4.96e-45FFCP PHASE1:Hg19::chr17:10741392..10741423,-#_82d7c8e98e172692c22e295c539afb01p1@PIRT
6.23e-45FFCP PHASE1:Hg19::chr3:42190714..42190787,+#_9818ad0e39af6909804a7b370ba177c0p3@TRAK1
6.23e-45FFCP PHASE2:Hg19::chr3:42190714..42190787,+#_9818ad0e39af6909804a7b370ba177c0p3@TRAK1
9.63e-45FFCP PHASE2:Hg19::chrX:32173579..32173593,-#_1b37ca97e88ee61b0f162b5cc84e1cdcp5@DMD
9.63e-45FFCP PHASE1:Hg19::chrX:32173579..32173593,-#_1b37ca97e88ee61b0f162b5cc84e1cdcp5@DMD
1.05e-44FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_92e3ea0895b543d1a9c2ab50909abeacp1@RFX4
1.05e-44FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_92e3ea0895b543d1a9c2ab50909abeacp1@RFX4
3.23e-44FFCP PHASE1:Hg19::chr11:35441089..35441112,-#_6dda37545b4a93dc6751e6442f33df73p1@SLC1A2
3.23e-44FFCP PHASE2:Hg19::chr11:35441089..35441112,-#_6dda37545b4a93dc6751e6442f33df73p1@SLC1A2
3.42e-44FFCP PHASE1:Hg19::chr18:55019972..55020018,+#_686e6cdd9356c67698dbdecc7f161381p2@ST8SIA3
3.42e-44FFCP PHASE2:Hg19::chr18:55019972..55020018,+#_686e6cdd9356c67698dbdecc7f161381p2@ST8SIA3
4.95e-44FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_3e1fd39b899ac2c9402a9eef8660629cp3@CTNND2
4.95e-44FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_3e1fd39b899ac2c9402a9eef8660629cp3@CTNND2
7.42e-44FFCP PHASE2:Hg19::chr12:99548496..99548518,-#_d5943bca532e6f9a575622af19b407edp3@ANKS1B
7.42e-44FFCP PHASE1:Hg19::chr12:99548496..99548518,-#_d5943bca532e6f9a575622af19b407edp3@ANKS1B
7.71e-44FFCP PHASE1:Hg19::chr19:51017895..51017953,-#_5612d2c3335416e152cbb3755d95ced4p1@ASPDH
7.71e-44FFCP PHASE2:Hg19::chr19:51017895..51017953,-#_5612d2c3335416e152cbb3755d95ced4p1@ASPDH
1.25e-43FFCP PHASE2:Hg19::chr1:205012293..205012326,+#_b61d3f833eeca0c87679d794bdf64dc7p2@CNTN2
1.25e-43FFCP PHASE1:Hg19::chr1:205012293..205012326,+#_b61d3f833eeca0c87679d794bdf64dc7p2@CNTN2
1.98e-43FFCP PHASE1:Hg19::chr2:210526166..210526232,+#_309151006d4fba66060b0601d6d13042p5@MAP2
1.98e-43FFCP PHASE2:Hg19::chr2:210526166..210526232,+#_309151006d4fba66060b0601d6d13042p5@MAP2
2.0e-43FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_34ffdef7c2010d91a93f6b3790200d27p2@RFX4
2.0e-43FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_34ffdef7c2010d91a93f6b3790200d27p2@RFX4
2.85e-43FFCP PHASE2:Hg19::chr18:48086440..48086509,+#_33a091ffb927c9ac5d3397390f144d67p1@MAPK4
2.85e-43FFCP PHASE1:Hg19::chr18:48086440..48086509,+#_33a091ffb927c9ac5d3397390f144d67p1@MAPK4
3.61e-43FFCP PHASE1:Hg19::chr8:27115909..27115927,-#_0841628d17ef14a111259d677dbe503bp1@STMN4
3.61e-43FFCP PHASE2:Hg19::chr8:27115909..27115927,-#_0841628d17ef14a111259d677dbe503bp1@STMN4
3.85e-43FFCP PHASE1:Hg19::chr15:51973635..51973646,+#_2c71948d17e943ee17264434d666a988p4@SCG3
3.85e-43FFCP PHASE2:Hg19::chr15:51973635..51973646,+#_2c71948d17e943ee17264434d666a988p4@SCG3
6.69e-43FFCP PHASE2:Hg19::chr1:160051319..160051366,+#_1821b6d2394b707335ecc5c1ad1716cbp1@KCNJ9
6.69e-43FFCP PHASE1:Hg19::chr1:160051319..160051366,+#_1821b6d2394b707335ecc5c1ad1716cbp1@KCNJ9
7.97e-43FFCP PHASE1:Hg19::chr5:38556700..38556714,-#_af18b518391c2686b8c60d735e1b2299p3@LIFR
7.97e-43FFCP PHASE2:Hg19::chr5:38556700..38556714,-#_af18b518391c2686b8c60d735e1b2299p3@LIFR
1.39e-42FFCP PHASE1:Hg19::chr11:35440898..35440916,-#_e0bac904f1deaadb0f15232c1f3b97a7p2@SLC1A2
1.39e-42FFCP PHASE2:Hg19::chr11:35440898..35440916,-#_e0bac904f1deaadb0f15232c1f3b97a7p2@SLC1A2
1.49e-42FFCP PHASE2:Hg19::chr3:181417353..181417371,+#_19a94ced9c50fa875c0a85aabc5bfdd9p1@SOX2-OT
1.49e-42FFCP PHASE1:Hg19::chr3:181417353..181417371,+#_19a94ced9c50fa875c0a85aabc5bfdd9p1@SOX2-OT
1.58e-42FFCP PHASE1:Hg19::chr1:160039940..160039963,-#_3b1aea0510d615ab5e16ce3901a8fba6p1@KCNJ10
1.58e-42FFCP PHASE2:Hg19::chr1:160039940..160039963,-#_3b1aea0510d615ab5e16ce3901a8fba6p1@KCNJ10
1.81e-42FFCP PHASE2:Hg19::chr17:42984601..42984636,-#_3ec4f1dcb9cb4f3923b2ba225ff5bcbep2@GFAP
1.81e-42FFCP PHASE1:Hg19::chr17:42984601..42984636,-#_3ec4f1dcb9cb4f3923b2ba225ff5bcbep2@GFAP
2.09e-42FFCP PHASE1:Hg19::chr3:6902794..6902808,+#_4087ad525f9768932284bf99bb98ae4fp1@GRM7
2.09e-42FFCP PHASE2:Hg19::chr3:6902794..6902808,+#_4087ad525f9768932284bf99bb98ae4fp1@GRM7
2.14e-42FFCP PHASE2:Hg19::chr1:92634472..92634492,+#_ec387d650e7205c6b905aafaf0faee52p1@KIAA1107
2.14e-42FFCP PHASE2:Hg19::chr11:84028339..84028387,-#_ec387d650e7205c6b905aafaf0faee52p1@DLG2
2.14e-42FFCP PHASE1:Hg19::chr1:92634472..92634492,+#_ec387d650e7205c6b905aafaf0faee52p1@KIAA1107
2.14e-42FFCP PHASE1:Hg19::chr11:84028339..84028387,-#_ec387d650e7205c6b905aafaf0faee52p1@DLG2
2.27e-42FFCP PHASE2:Hg19::chr5:138211081..138211157,+#_332bcfa8d7f5b039f61075804ef1f88fp3@CTNNA1
2.27e-42FFCP PHASE1:Hg19::chr5:138211081..138211157,+#_332bcfa8d7f5b039f61075804ef1f88fp3@CTNNA1
2.33e-42FFCP PHASE1:Hg19::chr8:30496078..30496130,+#_85c16a327cd15c5023ba4c873b8d65f8p1@LOC100507341
2.33e-42FFCP PHASE2:Hg19::chr8:30496078..30496130,+#_85c16a327cd15c5023ba4c873b8d65f8p1@LOC100507341
2.51e-42FFCP PHASE2:Hg19::chr2:152830441..152830472,-#_20133644dbbb1c08791e09ac213e610cp2@CACNB4
2.51e-42FFCP PHASE1:Hg19::chr2:152830441..152830472,-#_20133644dbbb1c08791e09ac213e610cp2@CACNB4
2.91e-42FFCP PHASE1:Hg19::chr2:210444267..210444287,+#_f85930e2987c453906278f555d522cd0p7@MAP2
2.91e-42FFCP PHASE2:Hg19::chr2:210444267..210444287,+#_f85930e2987c453906278f555d522cd0p7@MAP2
4.93e-42FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_6843b2335a0729a9c4f976e65a0b10cap6@GPM6B
4.93e-42FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_6843b2335a0729a9c4f976e65a0b10cap6@GPM6B
5.56e-42FFCP PHASE1:Hg19::chr8:27115931..27115942,-#_0e794ed49a5e87a8a48cbe80ea9d8703p2@STMN4
5.56e-42FFCP PHASE2:Hg19::chr8:27115931..27115942,-#_0e794ed49a5e87a8a48cbe80ea9d8703p2@STMN4
6.3e-42FFCP PHASE2:Hg19::chr17:76719615..76719624,-#_47fc61225c7a18f39e0b2272ef5f2627p9@CYTH1
6.3e-42FFCP PHASE1:Hg19::chr17:76719615..76719624,-#_47fc61225c7a18f39e0b2272ef5f2627p9@CYTH1
7.18e-42FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_8482854aca4fa355e3063be098e09c74p9@PRKACB
7.18e-42FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_8482854aca4fa355e3063be098e09c74p9@PRKACB
8.97e-42FFCP PHASE2:Hg19::chr20:58179554..58179578,+#_7f4c26b86bc1a22ed155c5c885488c61p2@PHACTR3
8.97e-42FFCP PHASE1:Hg19::chr20:58179554..58179578,+#_7f4c26b86bc1a22ed155c5c885488c61p2@PHACTR3
9.36e-42FFCP PHASE1:Hg19::chr20:58179582..58179601,+#_dfcaa13277caff63820d23c1f99b57eap1@PHACTR3
9.36e-42FFCP PHASE2:Hg19::chr20:58179582..58179601,+#_dfcaa13277caff63820d23c1f99b57eap1@PHACTR3
9.95e-42FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_fae7a7ddf6b4ffec9addf1254902caabp8@DST
9.95e-42FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_fae7a7ddf6b4ffec9addf1254902caabp8@DST
1.12e-41FFCP PHASE1:Hg19::chr18:55019772..55019837,+#_730ac6a0a80d27d48423f29cc028c7d3p1@ST8SIA3
1.12e-41FFCP PHASE2:Hg19::chr18:55019772..55019837,+#_730ac6a0a80d27d48423f29cc028c7d3p1@ST8SIA3
1.22e-41FFCP PHASE2:Hg19::chr10:60936360..60936423,+#_a3585b2871981cc281550ffe2d62e319p1@PHYHIPL
1.22e-41FFCP PHASE1:Hg19::chr10:60936360..60936423,+#_a3585b2871981cc281550ffe2d62e319p1@PHYHIPL
1.39e-41FFCP PHASE1:Hg19::chr1:156217831..156217867,-#_146dec7b7af3fb87b8ddcba1ff9b81c3p1@PAQR6
1.39e-41FFCP PHASE2:Hg19::chr1:156217831..156217867,-#_146dec7b7af3fb87b8ddcba1ff9b81c3p1@PAQR6
1.42e-41FFCP PHASE2:Hg19::chr8:85618155..85618173,+#_dffd5a5bd465098e52fa580d526b9f6bp3@RALYL
1.42e-41FFCP PHASE1:Hg19::chr8:85618155..85618173,+#_dffd5a5bd465098e52fa580d526b9f6bp3@RALYL
1.67e-41FFCP PHASE2:Hg19::chr12:99548524..99548550,-#_6601d20502174ef13f9bdd6741731b67p2@ANKS1B
1.67e-41FFCP PHASE1:Hg19::chr12:99548524..99548550,-#_6601d20502174ef13f9bdd6741731b67p2@ANKS1B
1.71e-41FFCP PHASE1:Hg19::chr7:154002286..154002307,+#_20e87d7f7ec948d649299e2a91e6dcf9p3@DPP6
1.71e-41FFCP PHASE2:Hg19::chr7:154002286..154002307,+#_20e87d7f7ec948d649299e2a91e6dcf9p3@DPP6
1.92e-41FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_ce5d7fe22cd42cb63ae842f846057284p2@uc002fch.1
1.92e-41FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_ce5d7fe22cd42cb63ae842f846057284p2@uc002fch.1
2.03e-41FFCP PHASE2:Hg19::chr7:137028534..137028548,-#_b489a326ce21e3c0beeb613ee960ea34p3@PTN
2.03e-41FFCP PHASE1:Hg19::chr7:137028534..137028548,-#_b489a326ce21e3c0beeb613ee960ea34p3@PTN