Personal tools

User:Hisa: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(50 intermediate revisions by the same user not shown)
Line 1: Line 1:
motif without matrices
<html>
[[Swissregulon:SRY.p1]]
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
[[Swissregulon:HOX(A,B,D)3.p1]]
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
                      <script>


doubled top motif tables
$(document).ready(function() {
CNhs10855 & CNhs11062
    var oTable =  $('.ff_sample_list').dataTable({
CNhs11245 & CNhs11183
CNhs11248 & CNhs11185
CNhs11772 & CNhs12996
CNhs11781 & CNhs12997


});


{{REVISIONTIMESTAMP}}
});
{{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0 | yes }}
</script>
</html>


{{CURRENTTIMESTAMP}}
{{#ask:[[Concept:FF_samples_withname]]|[[Sample_species::Human (Homo sapiens)]]|mainlabel=FF ontology id|?Name|?Sample_category|?datafreeze_phase
 
|format=ttable|class=ff_sample_list|limit=20|searchlabel=}}
 
== GOStat results on Coexpression cluster  ==
{{#info:The results for GOStat analysis on co-expressed clusters("All" category).  <br>Analyst: Erik Arner}}
 
<table class="wikitable mw-collapsible" style="float:left;"><tr><th>GO ID</th><th>GO name</th><th>FDR corrected p-value</th></tr>
<tr>
{{#arraymap:GO:0007286;spermatid development;1.65326619879562e-06;56223,110147,19119,83984,54137,22210,237336,18472,75533,319448,70069,19118,60534,77963,53422,74360,58864,21744,30959!GO:0046930;pore complex;1.6591932181841e-06;75471,71844,75751,110382,16650,74204,65246,72787,230673,227699,107939,56488,69482,59015,69379,18226,53319,66011,231042!GO:0044453;nuclear membrane part;2.24654749624857e-06;75471,71844,75751,16650,74204,65246,16907,72787,230673,227699,107939,56488,69482,106582,59015,18226,53319,66011,231042!GO:0005930;axoneme;3.99420143678076e-06;56087,77945,18285,330355,66722,69287,75563,432611,110083,13417,71877,110084,252868
|!|$
|<td>{{#explode:$|;|0}}</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}</td>
|</tr><tr>
}}
</tr>
</table>
 
 
 
 
<!--
{{#sparql:select * where { ?x ?y ?z . } LIMIT 100  |endpoint=http://localhost:8080/sparql/}}
 
{{#ask:[[Category:FFCP]][[Coexpression_cluster_id::C297]]|?id|?Short_description|?Phase1_expression|format=template|template=Datatable_sampledata|sep=,|limit=20000}}
 
{{#jstest:
{{#ask:[[Category:FF Ontology]][[Sample_species::Mouse (Mus musculus)]]|?id|?Name|?sample_tissue|?sample_cell_line=|?sample_cell_type|?rna_sample_type|format=template|template=Datatable_sampledata|sep=,|limit=2000}}
}}
 
{{#sparql:
SELECT * WHERE { ?x ?y ?z FILTER regex(?z, "GO")
} LIMIT 10
|endpoint=http://go.bio2rdf.org/sparql/
|footer=NO
}}
 
 
{{#sparql:select * where { ?x ?y ?z . } LIMIT 10  |endpoint=http://localhost:8080/sparql/}}
 
{{#sparql:
PREFIX prop:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/Property-3A>
PREFIX page:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/>
SELECT ?x,?y WHERE {
?x
prop:Sample_species
?y FILTER regex(?y, "OMO", "i" )
} LIMIT 100
|endpoint=http://localhost:8080/sparql/
|headers=Page,Id
|footer=NO
}}
 
 
-->

Latest revision as of 18:50, 20 February 2014

FF ontology idNameSample categoryDatafreeze phase
10000-101A1Clontech Human Universal Reference Total RNA, pool1tissues2
10001-101A3Clontech Mouse Universal Reference Total RNA, pool1tissues2
10002-101A5SABiosciences XpressRef Human Universal Total RNA, pool1tissues2
10003-101A7SABiosciences XpressRef Mouse Universal Total RNA, pool1tissues2
10004-101A9chicken embryo whole body, day10 (HH37)tissues-1
10005-101B1{{{name}}}{{{sample_category}}}-1
10006-101B2Universal RNA - Dog Normal Tissues Biochain, pool1tissues-1
10007-101B4Universal RNA - Human Normal Tissues Biochain, pool1tissues2
10008-101B6Universal RNA - Mouse Normal Tissues Biochain, pool1tissues2
10009-101B8Universal RNA - Rat Normal Tissues Biochain, pool1tissues-1
10010-101C1adipose tissue, adult, pool1tissues2
10011-101C2bladder, adult, pool1tissues2
10012-101C3brain, adult, pool1tissues2
10013-101C4cervix, adult, pool1tissues2
10014-101C5colon, adult, pool1tissues2
10015-101C6esophagus, adult, pool1tissues2
10016-101C7heart, adult, pool1tissues2
10017-101C8kidney, adult, pool1tissues2
10018-101C9liver, adult, pool1tissues2
10019-101D1lung, adult, pool1tissues2
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=User:Hisa&oldid=3265626"