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//var pvals = ['</html>{{#replace:{{{macroape_1083_sample_pvalues}}}|!|','}}<html>'];
//var pvals = ['</html>{{#replace:{{{macroape_1083_sample_pvalues}}}|!|','}}<html>'];
var repnames = 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R37B','LTR38','LTR38-int','LTR38B','LTR39','LTR39-int','LTR3A','LTR3B','LTR3B_','LTR4','LTR40A1','LTR40a','LTR40b','LTR40c','LTR41','LTR41,LTR41B','LTR41B','LTR42','LTR43','LTR43-int','LTR43B','LTR44','LTR45B','LTR45B,LTR72B','LTR45C','LTR46','LTR46-int','LTR47A','LTR47B','LTR48','LTR48B','LTR48B,LTR49-int','LTR49','LTR49,MSTB2','LTR49-int','LTR50','LTR51','LTR52','LTR52-int','LTR53','LTR54','LTR54B','LTR55','LTR56','LTR57','LTR57-int','LTR58','LTR5A','LTR5B','LTR5_Hs','LTR61','LTR62','LTR64','LTR65','LTR66','LTR67B','LTR67B,LTR67B','LTR67B,MER5A','LTR67B,MLT1J','LTR69','LTR6A','LTR6B','LTR7','LTR7,MER4C','LTR71A','LTR71B','LTR72','LTR72B','LTR73','LTR75','LTR75B','LTR75_1','LTR76','LTR77','LTR78','LTR78B','LTR79','LTR79,LTR79','LTR7B','LTR7C','LTR7Y','LTR8','LTR80B','LTR81AB','LTR81B','LTR81C','LTR82A','LTR82B','LTR83','LTR84a','LTR84b','LTR84b,LTR84b','LTR85a','LTR85b','LTR85c','LTR86A1','LTR86B2','LTR87','LTR88a','LTR88b','LTR88c','LTR89','LTR8A','LTR9','LTR90A','LTR90B','LTR9B','Looper','MADE1','MADE2','MARNA','MER101','MER101-int','MER101B','MER102a','MER102b','MER102c','MER103C','MER104','MER105','MER106A','MER106B','MER110','MER110-int','MER110A','MER112','MER113','MER113A','MER115','MER117','MER119','MER119,MER119','MER11A','MER11C','MER11D','MER121','MER125','MER126','MER130','MER131','MER135','MER1A','MER1B','MER2','MER20','MER20,MER5A1','MER20B','MER21-int','MER21A','MER21A,MER39','MER21B','MER21C','MER2B','MER3','MER3,MLT1J','MER30','MER30B','MER31-int','MER31-int,MER31-int','MER31A','MER31B','MER33','MER34-int','MER34A','MER34A1','MER34B','MER34B-int','MER34B-int,MER34B-int','MER34C','MER34C2','MER34C_','MER39','MER39B','MER4-int','MER41-int','MER41A','MER41B','MER41C','MER41D','MER41E','MER41G','MER44A','MER44B','MER44C','MER44D','MER45A','MER45B','MER45C','MER46C','MER47A','MER47B','MER47C','MER48','MER49','MER4A','MER4A1','MER4A1_','MER4B','MER4B-int','MER4B-int,U3','MER4C','MER4D','MER4D0','MER4D1','MER4E','MER4E1','MER50','MER50,MER50','MER50-int','MER50B','MER50C','MER51-int','MER51A','MER51B','MER51C','MER51D','MER51E','MER52-int','MER52A','MER52A,MER52A','MER52C','MER52D','MER53','MER54A','MER54B','MER57-int','MER57A-int','MER57A1','MER57A1,MER57D','MER57B1','MER57B2','MER57C1','MER57C2','MER57D','MER57E1','MER57E2','MER57E3','MER57F','MER58A','MER58B','MER58C','MER58D','MER5A','MER5A1','MER5B','MER5B,MIRb','MER5C','MER5C1','MER6','MER61-int','MER61A','MER61B','MER61C','MER61D','MER61E','MER61E,MLT2B1','MER61F','MER63A','MER63B','MER63C','MER63D','MER65-int','MER65A','MER65B','MER65C','MER65D','MER66-int','MER66A','MER66B','MER66C','MER66D','MER67A','MER67B','MER67C','MER67D','MER68','MER68-int','MER68B','MER6A','MER6B','MER70-int','MER70A','MER70B','MER70C','MER72','MER73','MER74A','MER74A,MER74A','MER74B','MER74C','MER75A','MER76','MER77','MER77B','MER8','MER81','MER82','MER83','MER83A-int','MER83B','MER83C','MER84','MER84-int','MER85','MER87B','MER89','MER89,MER89','MER90','MER90a','MER91A','MER91B','MER91C','MER92A','MER92B','MER92C','MER94','MER94B','MER95','MER96','MER96B','MER97a','MER99','MER9a2','MIR','MIR,MIRc','MIR,T-rich','MIR3','MIR3,MIRb','MIR3,MLT1C','MIRb','MIRc','MLT-int','MLT1-int','MLT1A','MLT1A0','MLT1A0-int','MLT1A1','MLT1A1-int','MLT1B','MLT1B-int','MLT1C','MLT1C-int','MLT1D','MLT1D-int','MLT1E','MLT1E1','MLT1E1A','MLT1E1A,U4','MLT1E1A-int','MLT1E2','MLT1E3','MLT1E3-int','MLT1F','MLT1F,THE1B','MLT1F-int','MLT1F1','MLT1F2','MLT1F2-int','MLT1G','MLT1G-int','MLT1G1','MLT1G1,MSTA','MLT1G3','MLT1G3-int','MLT1H','MLT1H-int','MLT1H1','MLT1H2','MLT1I','MLT1I-int','MLT1J','MLT1J-int','MLT1J1','MLT1J1-int','MLT1J2','MLT1J2-int','MLT1K','MLT1L','MLT1M','MLT1N2','MLT2A1','MLT2A2','MLT2B1','MLT2B2','MLT2B3','MLT2B4','MLT2B5','MLT2C1','MLT2C2','MLT2D','MLT2E','MLT2F','MSR1','MSTA','MSTA-int','MSTB','MSTB-int','MSTB1','MSTB2','MSTB2-int','MSTC','MSTD','MSTD-int','MamGyp-int','MamGypLTR1a','MamGypLTR1b','MamGypLTR1c','MamGypLTR1d','MamGypLTR2c','MamGypLTR3','MamRep1161','MamRep137','MamRep1527','MamRep1879','MamRep38','MamRep4096','MamRep434','MamRep488','MamRep564','MamRep605','MamSINE1','Merlin1_HS','ORSL','ORSL-2a','ORSL-2b','PABL_A','PABL_A-int','PABL_B','PABL_B-int','PRIMA4-int','PRIMA41-int','PRIMA4_LTR','Plat_L3','PrimLTR79','REP522','Ricksha','Ricksha_0','Ricksha_c','SAR','SATR1','SST1','SSU-rRNA_Hsa','SUBTEL_sa','SVA_B','SVA_C','SVA_D','SVA_F','T-rich','TAR1','THE1-int','THE1A','THE1A-int','THE1B','THE1B-int','THE1C','THE1D','THE1D-int','Tigger1','Tigger1,U1','Tigger10','Tigger11a','Tigger12','Tigger12A','Tigger12c','Tigger13a','Tigger14a','Tigger15a','Tigger16a','Tigger16b','Tigger1a_Art','Tigger2','Tigger2a','Tigger2b_Pri','Tigger3','Tigger3,Tigger3','Tigger3a','Tigger3b','Tigger3c','Tigger4','Tigger4,Tigger4','Tigger4a','Tigger5','Tigger6a','Tigger6b','Tigger7','Tigger8','Tigger9a','Tigger9b','U1','U13','U13_','U14','U17','U2','U3','U4','U5','U6','U7','U8','UCON14','UCON2','UCON26','UCON29','UCON31','X3_LINE','X6A_LINE','X6B_LINE','X7A_LINE','X7B_LINE','X7C_LINE','X9_LINE','Zaphod','Zaphod3','polypurine','polypyrimidine','tRNA-Ala-GCY','tRNA-Ala-GCY_','tRNA-Arg-AGG','tRNA-Asn-AAC','tRNA-Asn-AAT','tRNA-Gln-CAA_','tRNA-Gly-GGA','tRNA-Leu-TTA','tRNA-Leu-TTA(m)','tRNA-Met-i','tRNA-Pro-CCA','tRNA-Ser-AGY','tRNA-Ser-TCA(m)'];
var repnames = ['(A)n','(A)n,(CA)n','(A)n,AluJb','(A)n,GA-rich','(A)n,HY1','(A)n,L1ME3A','(A)n,MER45R','(A)n,MER4D0','(A)n,MER5A1','(A)n,MER66D','(A)n,MIR','(A)n,MIRc','(A)n,MLT1L','(A)n,UCON4','(ACCTG)n','(ACTG)n','(ACTG)n,(CGG)n','(AGGGGG)n','(AGGGGG)n,(CGG)n','(AGGTG)n,(CCG)n','(ATG)n','(ATGGTG)n','(C)n','(C)n,LTR12C','(C)n,MER52D','(CA)n','(CA)n,(CA)n','(CA)n,(CA)n,(CATATA)n','(CA)n,(CACAC)n','(CA)n,(CATA)n','(CA)n,(TA)n','(CA)n,(TCTCTG)n','(CA)n,GC_rich','(CA)n,L1MD2','(CA)n,polypyrimidine','(CAA)n','(CAAA)n','(CAAAA)n','(CAAAA)n,MLT2B3','(CAAAAA)n','(CAAGC)n','(CACAA)n','(CACAC)n','(CACAG)n','(CACCAT)n','(CACCC)n','(CACCT)n','(CACG)n','(CACGC)n','(CAG)n','(CAG)n,(CCCCG)n','(CAG)n,(CGG)n','(CAG)n,C-rich','(CAG)n,G-rich','(CAG)n,GC_rich','(CAGA)n','(CAGAGA)n','(CAGAGA)n,GA-rich','(CAGC)n','(CAGC)n,C-rich','(CAGCC)n','(CAGCC)n,(CAGCT)n','(CAGCC)n,GC_rich','(CAGCG)n','(CAGCT)n','(CAGG)n','(CAGG)n,G-rich','(CAGGC)n','(CAGGC)n,(CCG)n','(CAGGG)n','(CAGT)n','(CAT)n','(CATA)n','(CATAG)n','(CATATA)n','(CATCC)n','(CATTC)n','(CATTT)n','(CCA)n','(CCA)n,(CCA)n','(CCA)n,AT_rich','(CCA)n,C-rich','(CCAA)n','(CCAA)n,(CCCA)n','(CCAA)n,AluJb','(CCCA)n','(CCCCAA)n','(CCCCAA)n,(CCCCAG)n','(CCCCAG)n','(CCCCAG)n,(CCG)n','(CCCCCA)n','(CCCCCG)n','(CCCCCG)n,C-rich','(CCCCCG)n,GC_rich','(CCCCCT)n','(CCCCCT)n,GC_rich','(CCCCG)n','(CCCCG)n,(CCCCG)n','(CCCCG)n,(CCG)n','(CCCCG)n,(CCG)n,C-rich','(CCCCG)n,(CGG)n,C-rich','(CCCCG)n,(CTCGG)n','(CCCCG)n,(TCC)n','(CCCCG)n,C-rich','(CCCCG)n,C-rich,GC_rich','(CCCCG)n,G-rich','(CCCCG)n,GC_rich','(CCCCG)n,GC_rich,GC_rich','(CCCG)n','(CCCG)n,(CCG)n','(CCCG)n,(CGGGG)n','(CCCG)n,GC_rich','(CCCGAA)n','(CCCGG)n','(CCCTG)n','(CCG)n','(CCG)n,(CCG)n','(CCG)n,(CCGCG)n','(CCG)n,(CG)n','(CCG)n,(CGG)n','(CCG)n,(CGGGG)n','(CCG)n,(CGGGGG)n','(CCG)n,(CGTG)n','(CCG)n,(CTG)n','(CCG)n,(TG)n','(CCG)n,C-rich','(CCG)n,CT-rich','(CCG)n,G-rich','(CCG)n,GA-rich','(CCG)n,GC_rich','(CCGAG)n','(CCGAG)n,G-rich','(CCGAG)n,GC_rich','(CCGCG)n','(CCGCG)n,(CGCGG)n','(CCGCG)n,(CGG)n','(CCGCG)n,C-rich','(CCGCG)n,G-rich','(CCGCG)n,GC_rich','(CCGCG)n,GC_rich,GC_rich','(CCGGG)n','(CCGGG)n,C-rich','(CCTA)n','(CCTCG)n','(CCTG)n','(CG)n','(CG)n,(TG)n','(CG)n,C-rich','(CG)n,GC_rich','(CGA)n','(CGAG)n','(CGAG)n,G-rich','(CGAGG)n','(CGAGG)n,G-rich','(CGCGG)n','(CGCGG)n,(CGG)n','(CGCGG)n,(CGGGG)n','(CGCGG)n,G-rich','(CGCGG)n,GC_rich','(CGG)n','(CGG)n,(CGG)n','(CGG)n,(CGGG)n','(CGG)n,(CGGGG)n','(CGG)n,(CGGGG)n,(CGGGG)n','(CGG)n,(CGGGG)n,GC_rich','(CGG)n,(CTG)n','(CGG)n,(GGA)n','(CGG)n,(GGA)n,GC_rich','(CGG)n,(TCC)n','(CGG)n,C-rich','(CGG)n,CT-rich','(CGG)n,G-rich','(CGG)n,G-rich,G-rich','(CGG)n,GA-rich','(CGG)n,GC_rich','(CGG)n,GC_rich,GC_rich','(CGGA)n','(CGGAA)n','(CGGAG)n','(CGGAG)n,GC_rich','(CGGG)n','(CGGG)n,(CGGGG)n','(CGGG)n,G-rich','(CGGG)n,GC_rich','(CGGGA)n','(CGGGG)n','(CGGGG)n,C-rich','(CGGGG)n,C-rich,G-rich','(CGGGG)n,G-rich','(CGGGG)n,GC_rich','(CGGGGG)n','(CGGGGG)n,G-rich','(CGGGGG)n,GC_rich','(CGGGGG)n,GC_rich,GC_rich','(CGGT)n','(CGGTG)n','(CGTG)n','(CGTG)n,C-rich','(CGTG)n,G-rich','(CGTG)n,GA-rich','(CGTG)n,GC_rich','(CTA)n','(CTA)n,Tigger7','(CTAG)n','(CTAG)n,AluJr4','(CTAG)n,AluSq2','(CTAG)n,L1M4','(CTATA)n,(TA)n','(CTCA)n','(CTCCG)n','(CTCG)n','(CTCG)n,(TCCC)n','(CTCG)n,GC_rich','(CTCGG)n','(CTCGG)n,C-rich,GC_rich','(CTCGG)n,G-rich','(CTCGG)n,GC_rich','(CTCTG)n','(CTG)n','(CTG)n,(TCC)n','(CTG)n,(TGG)n','(CTG)n,CT-rich','(CTG)n,G-rich','(CTGGGG)n','(CTGGGG)n,(TTGGGG)n','(CTGGGG)n,G-rich','(G)n','(GA)n','(GA)n,(TG)n','(GA)n,G-rich','(GAA)n','(GAAA)n','(GAAAA)n','(GAATG)n','(GAGTG)n','(GCGTG)n','(GCTG)n','(GGA)n','(GGA)n,A-rich','(GGA)n,G-rich','(GGA)n,GA-rich','(GGA)n,GC_rich','(GGAA)n','(GGAAA)n','(GGAGA)n','(GGAGAA)n','(GGATG)n','(GGCTG)n','(GGGA)n','(GGGAA)n','(GGGAGA)n','(GGGGA)n','(GGGGA)n,G-rich','(GGGTG)n','(GTGTG)n','(GTGTG)n,(TG)n','(T)n','(T)n,(TG)n','(T)n,AluJo','(T)n,G-rich','(T)n,L1ME3','(T)n,L1ME3C','(T)n,L2','(T)n,L2a','(T)n,L2c','(T)n,MLT1I','(TA)n','(TAAA)n','(TAAAA)n','(TAAAAA)n','(TAG)n,(TCG)n','(TAGA)n','(TAGA)n,L1MEc','(TAGTG)n','(TATATG)n','(TATATG)n,U4','(TATG)n','(TC)n','(TC)n,MLT1A0','(TCC)n','(TCC)n,G-rich','(TCC)n,Tigger2a','(TCCA)n','(TCCA)n,(TCCA)n','(TCCC)n','(TCCC)n,C-rich','(TCCC)n,CT-rich','(TCCCC)n','(TCCCC)n,GC_rich','(TCCCG)n','(TCCCG)n,GC_rich','(TCCG)n','(TCCG)n,(TCTG)n','(TCCG)n,C-rich','(TCCTG)n','(TCG)n','(TCGGG)n','(TCTA)n','(TCTA)n,U2','(TCTCCC)n','(TCTCCC)n,SVA_D','(TCTCTG)n','(TCTG)n','(TG)n','(TG)n,(TG)n','(TG)n,Charlie1b','(TG)n,G-rich','(TGAA)n','(TGAG)n','(TGG)n','(TGGA)n','(TGGA)n,(TGGA)n','(TGGA)n,(TGGG)n','(TGGA)n,AluSx1','(TGGA)n,AluY','(TGGA)n,L2a','(TGGG)n','(TGGGGG)n','(TTAGGC)n','(TTAGGG)n','(TTC)n','(TTCA)n','(TTCC)n','(TTCCC)n','(TTG)n','(TTGTG)n','(TTTC)n','(TTTG)n','(TTTTA)n','(TTTTC)n','(TTTTG)n','(TTTTTG)n','5S','7SK','7SK,MIRc','7SLRNA','A-rich','A-rich,GA-rich','ACRO1','ALINE','ALR/Alpha','AT_rich','AT_rich,AluSx','AT_rich,U1','AluJb','AluJb,L1MC4a','AluJb,MIR','AluJb,MLT1D','AluJb,U4','AluJo','AluJo,L1MB7','AluJo,LSU-rRNA_Hsa','AluJr','AluJr4','AluSc','AluSc5','AluSc8',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INE','Zaphod','Zaphod3','polypurine','polypyrimidine','tRNA-Ala-GCY','tRNA-Ala-GCY_','tRNA-Arg-AGG','tRNA-Asn-AAC','tRNA-Asn-AAT','tRNA-Gln-CAA_','tRNA-Gly-GGA','tRNA-Leu-TTA','tRNA-Leu-TTA(m)','tRNA-Met-i','tRNA-Pro-CCA','tRNA-Ser-AGY','tRNA-Ser-TCA(m)'];
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for(i1=0;i1<repnames.length;i1++){
for(i1=0;i1<repnames.length;i1++){
//pval = pvals[i1].split(";");
//pval = pvals[i1].split(";");
Line 30: Line 30:
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Revision as of 18:04, 10 September 2012


Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon

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