User:Hisa/SemanticSbox: Difference between revisions
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== TomTom analysis == | |||
{{#info: <br>Analyst: Michiel de Hoon and Hiroko Ohmiya}} | |||
{{#if: {{#pos:;;|;}} | | |||
<html> | |||
<script type="text/javascript"> | |||
$(document).ready(function() { | |||
$('#tomtom_results').dataTable({ | |||
"sScrollY": "300px", | |||
"bPaginate": false, | |||
"bScrollCollapse": true, | |||
"iDisplayLength": -1, | |||
"aaSorting": [[2,'asc']], | |||
"aoColumnDefs": [{"fnRender": function ( o, val ) {var elem = o.aData[0].split("#"); return "<a href=\"http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID="+elem[1]+"&rm=present&collection=CORE\">"+elem[0]+"</a>";}, "aTargets": [ 0 ]}, { "sWidth": "150px", "sType": "numeric", "aTargets": [2,3,4] }] | |||
}); | |||
}); | |||
</script> | |||
</html> | |||
<table> | |||
<tr><th>Target ID</th><th>Optimal offset</th><th>p-value</th><th>E-value</th><th>q-value</th><th>Overlap</th><th>Query consensus</th><th>Target consensus</th><th>Orientation</th></tr> | |||
<table id="tomtom_results"><html><thead></html> | |||
<tr><th>Target ID</th><th>Optimal offset</th><th>p-value</th><th>E-value</th><th>q-value</th><th>Overlap</th><th>Query consensus</th><th>Target consensus</th><th>Orientation</th></tr><html></thead><tbody></html> | |||
{{#arraymap:sna#MA0086.1;0;0.000269781;0.128416;0.256495;6;CAACTG;CACCTG;-!TAL1::TCF3#MA0091.1;4;0.00138284;0.658233;0.318381;6;CAACTG;CGACCATCTGTT;+! | {{#arraymap:sna#MA0086.1;0;0.000269781;0.128416;0.256495;6;CAACTG;CACCTG;-!TAL1::TCF3#MA0091.1;4;0.00138284;0.658233;0.318381;6;CAACTG;CGACCATCTGTT;+! | ||
ZEB1#MA0103.1;0;0.00141154;0.671892;0.318381;6;CAACTG;CACCTG;+!Myf#MA0055.1;3;0.00156538;0.745122;0.318381;6;CAACTG;CAGCAGCTGCTG;+!NHLH1#MA0048.1;3;0.00177224;0.843587;0.318381;6;CAACTG;ACGCAGCTGCGC;-! | ZEB1#MA0103.1;0;0.00141154;0.671892;0.318381;6;CAACTG;CACCTG;+!Myf#MA0055.1;3;0.00156538;0.745122;0.318381;6;CAACTG;CAGCAGCTGCTG;+!NHLH1#MA0048.1;3;0.00177224;0.843587;0.318381;6;CAACTG;ACGCAGCTGCGC;-! | ||
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|<tr><td>{{#replace:$|;|</td><td>}}</td></tr> | |<tr><td>{{#replace:$|;|</td><td>}}</td></tr> | ||
|}} | |}} | ||
</table> | <html></tbody></html></table> | ||
}} | |||
Revision as of 16:39, 6 September 2012
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
| Target ID | Optimal offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
|---|---|---|---|---|---|---|---|---|
| sna#MA0086.1 | 0 | 0.000269781 | 0.128416 | 0.256495 | 6 | CAACTG | CACCTG | - |
| TAL1::TCF3#MA0091.1 | 4 | 0.00138284 | 0.658233 | 0.318381 | 6 | CAACTG | CGACCATCTGTT | + |
| ZEB1#MA0103.1 | 0 | 0.00141154 | 0.671892 | 0.318381 | 6 | CAACTG | CACCTG | + |
| Myf#MA0055.1 | 3 | 0.00156538 | 0.745122 | 0.318381 | 6 | CAACTG | CAGCAGCTGCTG | + |
| NHLH1#MA0048.1 | 3 | 0.00177224 | 0.843587 | 0.318381 | 6 | CAACTG | ACGCAGCTGCGC | - |
| Myb#MA0100.1 | 0 | 0.00601429 | 2.8628 | 0.816872 | 6 | CAACTG | CAACGGCC | - |
| MET4#MA0335.1 | -1 | 0.013997 | 6.66255 | 0.998691 | 5 | CAACTG | AACTGTGG | + |
| Mycn#MA0104.1 | 0 | 0.0187642 | 8.93177 | 0.998691 | 6 | CAACTG | CACGTG | + |
