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Difference between revisions of "Template:F5samples"

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(Parent Ontologies)
(Parent Ontologies)
Line 153: Line 153:
  
 
== Parent Ontologies ==
 
== Parent Ontologies ==
{{#if: {{{ancestors_in_cell_lineage_facet}}} | yes}}
+
{{#if: {{{ancestors_in_cell_lineage_facet}}} | {{#ask:[[{{FULLPAGENAME}}]]|?ancestors_in_cell_lineage_facet|intro='''Cell lineage'''<br>|sep =  <br> }}|}}
{{#if: {{{ancestors_in_disease_facet}}} | yes | no}}
+
{{#if: {{{ancestors_in_disease_facet}}} | <br><br>{{#ask:[[{{FULLPAGENAME}}]]|?ancestors_in_disease_facet|intro='''Disease'''<br>|sep =  <br> }} |}}
{{#if: {{{ancestors_in_anatomy_facet}}} | {{#show:{{PAGENAME}}}} |}}
+
{{#if: {{{ancestors_in_anatomy_facet}}} | <br><br>{{#ask:[[{{FULLPAGENAME}}]]|?ancestors_in_anatomy_facet|intro='''Anatomy'''<br>|sep =  <br> }} |}}
  
 
{{#arraymap:{{{ancestors_in_cell_lineage_facet|}}}|,|x|{{#set:ancestors_in_cell_lineage_facet=x}}}}
 
{{#arraymap:{{{ancestors_in_cell_lineage_facet|}}}|,|x|{{#set:ancestors_in_cell_lineage_facet=x}}}}
Line 164: Line 164:
 
{{PAGENAME}}
 
{{PAGENAME}}
  
{{#show:{{{id}}}|?Ancestors in anatomy facet}}
 
{{#ask:[[{{FULLPAGENAME}}]]|?Ancestors in anatomy facet}}
 
  
 
<div>
 
<div>

Revision as of 04:37, 26 January 2012

{{{id}}}
name {{{name}}}
species {{{sample_species}}}
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}


{{{name}}}. Its transcriptome profile can be found in Genome Browsers ( zenbu and UCSC )



Specific TFs

  • ...
  • ...
  • ...

Specific genes

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  • ...
  • ...

Specific TSS regions

  • ...
  • ...
  • ...

Specific motifs

  • ...
  • ...
  • ...

De-novo motifs

  • ...
  • ...
  • ...

Parent Ontologies







Template:F5samples F5samples